Strain Fitness in Rahnella sp. WP5 around EX31_RS07935

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07930 and EX31_RS07935 are separated by 165 nucleotidesEX31_RS07935 and EX31_RS07940 are separated by 86 nucleotides EX31_RS07930: EX31_RS07930 - PTS transporter subunit EIIC, at 69,065 to 70,618 _RS07930 EX31_RS07935: EX31_RS07935 - MurR/RpiR family transcriptional regulator, at 70,784 to 71,623 _RS07935 EX31_RS07940: EX31_RS07940 - phosphopyruvate hydratase, at 71,710 to 73,014 _RS07940 Position (kb) 70 71 72Strain fitness (log2 ratio) -2 -1 0 1 2 3at 69.790 kb on + strand, within EX31_RS07930at 69.790 kb on + strand, within EX31_RS07930at 69.791 kb on - strand, within EX31_RS07930at 69.791 kb on - strand, within EX31_RS07930at 69.791 kb on - strand, within EX31_RS07930at 69.791 kb on - strand, within EX31_RS07930at 69.791 kb on - strand, within EX31_RS07930at 69.793 kb on + strand, within EX31_RS07930at 69.895 kb on - strand, within EX31_RS07930at 69.895 kb on - strand, within EX31_RS07930at 69.901 kb on + strand, within EX31_RS07930at 69.902 kb on - strand, within EX31_RS07930at 69.902 kb on - strand, within EX31_RS07930at 69.902 kb on - strand, within EX31_RS07930at 69.902 kb on - strand, within EX31_RS07930at 69.928 kb on + strand, within EX31_RS07930at 69.928 kb on + strand, within EX31_RS07930at 69.928 kb on + strand, within EX31_RS07930at 69.928 kb on + strand, within EX31_RS07930at 69.928 kb on + strand, within EX31_RS07930at 69.928 kb on + strand, within EX31_RS07930at 69.928 kb on + strand, within EX31_RS07930at 69.928 kb on + strand, within EX31_RS07930at 69.928 kb on + strand, within EX31_RS07930at 69.928 kb on + strand, within EX31_RS07930at 69.928 kb on + strand, within EX31_RS07930at 69.928 kb on + strand, within EX31_RS07930at 69.928 kb on + strand, within EX31_RS07930at 69.928 kb on + strand, within EX31_RS07930at 69.928 kb on + strand, within EX31_RS07930at 69.928 kb on + strand, within EX31_RS07930at 69.928 kb on + strand, within EX31_RS07930at 69.928 kb on + strand, within EX31_RS07930at 69.928 kb on + strand, within EX31_RS07930at 69.928 kb on + strand, within EX31_RS07930at 69.928 kb on + strand, within EX31_RS07930at 69.928 kb on + strand, within EX31_RS07930at 69.929 kb on - strand, within EX31_RS07930at 69.929 kb on - strand, within EX31_RS07930at 69.929 kb on - strand, within EX31_RS07930at 69.929 kb on - strand, within EX31_RS07930at 69.929 kb on - strand, within EX31_RS07930at 69.929 kb on - strand, within EX31_RS07930at 69.929 kb on - strand, within EX31_RS07930at 69.929 kb on - strand, within EX31_RS07930at 69.929 kb on - strand, within EX31_RS07930at 69.929 kb on - strand, within EX31_RS07930at 69.929 kb on - strand, within EX31_RS07930at 69.929 kb on - strand, within EX31_RS07930at 69.929 kb on - strand, within EX31_RS07930at 69.929 kb on - strand, within EX31_RS07930at 69.929 kb on - strand, within EX31_RS07930at 69.929 kb on - strand, within EX31_RS07930at 69.932 kb on + strand, within EX31_RS07930at 69.932 kb on + strand, within EX31_RS07930at 69.932 kb on + strand, within EX31_RS07930at 69.933 kb on - strand, within EX31_RS07930at 69.933 kb on - strand, within EX31_RS07930at 69.933 kb on - strand, within EX31_RS07930at 70.131 kb on + strand, within EX31_RS07930at 70.336 kb on + strand, within EX31_RS07930at 70.337 kb on - strand, within EX31_RS07930at 70.337 kb on - strand, within EX31_RS07930at 70.337 kb on - strand, within EX31_RS07930at 70.464 kb on + strandat 70.477 kb on + strandat 70.477 kb on + strandat 70.478 kb on - strandat 70.478 kb on - strandat 70.505 kb on - strandat 70.534 kb on + strandat 70.610 kb on + strandat 70.610 kb on + strandat 70.610 kb on + strandat 70.610 kb on + strandat 70.610 kb on + strandat 70.753 kb on + strandat 70.753 kb on + strandat 70.754 kb on - strandat 70.766 kb on + strandat 70.766 kb on + strandat 70.766 kb on + strandat 70.766 kb on + strandat 70.844 kb on + strandat 70.845 kb on - strandat 70.845 kb on - strandat 70.904 kb on + strand, within EX31_RS07935at 70.904 kb on + strand, within EX31_RS07935at 70.939 kb on + strand, within EX31_RS07935at 71.003 kb on - strand, within EX31_RS07935at 71.165 kb on - strand, within EX31_RS07935at 71.186 kb on + strand, within EX31_RS07935at 71.186 kb on + strand, within EX31_RS07935at 71.186 kb on + strand, within EX31_RS07935at 71.186 kb on + strand, within EX31_RS07935at 71.186 kb on + strand, within EX31_RS07935at 71.186 kb on + strand, within EX31_RS07935at 71.186 kb on + strand, within EX31_RS07935at 71.187 kb on - strand, within EX31_RS07935at 71.187 kb on - strand, within EX31_RS07935at 71.187 kb on - strand, within EX31_RS07935at 71.187 kb on - strand, within EX31_RS07935at 71.187 kb on - strand, within EX31_RS07935at 71.220 kb on - strand, within EX31_RS07935at 71.228 kb on + strand, within EX31_RS07935at 71.229 kb on - strand, within EX31_RS07935at 71.272 kb on + strand, within EX31_RS07935at 71.272 kb on + strand, within EX31_RS07935at 71.317 kb on + strand, within EX31_RS07935at 71.407 kb on + strand, within EX31_RS07935at 71.416 kb on + strand, within EX31_RS07935at 71.416 kb on + strand, within EX31_RS07935at 71.416 kb on + strand, within EX31_RS07935at 71.416 kb on + strand, within EX31_RS07935at 71.416 kb on + strand, within EX31_RS07935at 71.416 kb on + strand, within EX31_RS07935at 71.417 kb on - strand, within EX31_RS07935at 71.417 kb on - strand, within EX31_RS07935at 71.417 kb on - strand, within EX31_RS07935at 71.450 kb on - strand, within EX31_RS07935at 71.535 kb on + strand, within EX31_RS07935at 71.535 kb on + strand, within EX31_RS07935at 71.535 kb on + strand, within EX31_RS07935at 71.535 kb on + strand, within EX31_RS07935at 71.614 kb on - strandat 71.621 kb on + strandat 71.622 kb on - strandat 71.622 kb on - strandat 71.687 kb on - strandat 71.687 kb on - strandat 71.687 kb on - strandat 71.707 kb on + strandat 71.707 kb on + strandat 71.708 kb on - strandat 71.711 kb on + strandat 71.712 kb on - strandat 71.712 kb on - strandat 71.712 kb on - strandat 71.722 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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69,790 + EX31_RS07930 0.47 -0.1
69,790 + EX31_RS07930 0.47 +0.8
69,791 - EX31_RS07930 0.47 -0.2
69,791 - EX31_RS07930 0.47 +1.1
69,791 - EX31_RS07930 0.47 -0.9
69,791 - EX31_RS07930 0.47 +1.3
69,791 - EX31_RS07930 0.47 +0.9
69,793 + EX31_RS07930 0.47 +0.4
69,895 - EX31_RS07930 0.53 -0.4
69,895 - EX31_RS07930 0.53 -1.4
69,901 + EX31_RS07930 0.54 +1.2
69,902 - EX31_RS07930 0.54 -0.7
69,902 - EX31_RS07930 0.54 -0.7
69,902 - EX31_RS07930 0.54 +2.3
69,902 - EX31_RS07930 0.54 -0.6
69,928 + EX31_RS07930 0.56 +0.1
69,928 + EX31_RS07930 0.56 +1.4
69,928 + EX31_RS07930 0.56 -0.0
69,928 + EX31_RS07930 0.56 -0.0
69,928 + EX31_RS07930 0.56 +0.3
69,928 + EX31_RS07930 0.56 +0.5
69,928 + EX31_RS07930 0.56 +1.4
69,928 + EX31_RS07930 0.56 +0.7
69,928 + EX31_RS07930 0.56 +0.3
69,928 + EX31_RS07930 0.56 +0.6
69,928 + EX31_RS07930 0.56 +0.2
69,928 + EX31_RS07930 0.56 -0.3
69,928 + EX31_RS07930 0.56 -2.6
69,928 + EX31_RS07930 0.56 -0.9
69,928 + EX31_RS07930 0.56 +0.7
69,928 + EX31_RS07930 0.56 -0.2
69,928 + EX31_RS07930 0.56 +0.2
69,928 + EX31_RS07930 0.56 +0.8
69,928 + EX31_RS07930 0.56 +0.4
69,928 + EX31_RS07930 0.56 -0.0
69,928 + EX31_RS07930 0.56 +1.6
69,928 + EX31_RS07930 0.56 -2.2
69,929 - EX31_RS07930 0.56 -0.2
69,929 - EX31_RS07930 0.56 +0.9
69,929 - EX31_RS07930 0.56 -2.2
69,929 - EX31_RS07930 0.56 -1.2
69,929 - EX31_RS07930 0.56 -0.6
69,929 - EX31_RS07930 0.56 +3.0
69,929 - EX31_RS07930 0.56 -0.2
69,929 - EX31_RS07930 0.56 -2.0
69,929 - EX31_RS07930 0.56 +1.4
69,929 - EX31_RS07930 0.56 +0.4
69,929 - EX31_RS07930 0.56 -0.1
69,929 - EX31_RS07930 0.56 -0.4
69,929 - EX31_RS07930 0.56 -1.5
69,929 - EX31_RS07930 0.56 -0.6
69,929 - EX31_RS07930 0.56 +0.7
69,929 - EX31_RS07930 0.56 +1.4
69,932 + EX31_RS07930 0.56 +0.7
69,932 + EX31_RS07930 0.56 +0.1
69,932 + EX31_RS07930 0.56 -1.2
69,933 - EX31_RS07930 0.56 -0.7
69,933 - EX31_RS07930 0.56 +0.2
69,933 - EX31_RS07930 0.56 -0.4
70,131 + EX31_RS07930 0.69 -1.9
70,336 + EX31_RS07930 0.82 +2.2
70,337 - EX31_RS07930 0.82 -0.9
70,337 - EX31_RS07930 0.82 -2.0
70,337 - EX31_RS07930 0.82 +0.0
70,464 + -0.0
70,477 + +0.8
70,477 + -0.2
70,478 - -0.5
70,478 - -2.7
70,505 - +0.1
70,534 + +0.4
70,610 + +0.4
70,610 + +0.0
70,610 + +1.1
70,610 + -2.6
70,610 + +1.6
70,753 + +0.6
70,753 + +0.4
70,754 - +0.4
70,766 + -0.4
70,766 + -0.7
70,766 + +0.4
70,766 + +0.7
70,844 + -1.0
70,845 - -0.2
70,845 - +0.6
70,904 + EX31_RS07935 0.14 +0.4
70,904 + EX31_RS07935 0.14 +1.0
70,939 + EX31_RS07935 0.18 -0.2
71,003 - EX31_RS07935 0.26 +0.8
71,165 - EX31_RS07935 0.45 -1.0
71,186 + EX31_RS07935 0.48 -0.9
71,186 + EX31_RS07935 0.48 +0.3
71,186 + EX31_RS07935 0.48 -1.4
71,186 + EX31_RS07935 0.48 +0.7
71,186 + EX31_RS07935 0.48 -0.1
71,186 + EX31_RS07935 0.48 -0.7
71,186 + EX31_RS07935 0.48 +0.4
71,187 - EX31_RS07935 0.48 +0.5
71,187 - EX31_RS07935 0.48 +1.1
71,187 - EX31_RS07935 0.48 +0.4
71,187 - EX31_RS07935 0.48 +0.3
71,187 - EX31_RS07935 0.48 -0.5
71,220 - EX31_RS07935 0.52 -0.6
71,228 + EX31_RS07935 0.53 +0.7
71,229 - EX31_RS07935 0.53 +0.5
71,272 + EX31_RS07935 0.58 -2.2
71,272 + EX31_RS07935 0.58 +0.5
71,317 + EX31_RS07935 0.63 +0.8
71,407 + EX31_RS07935 0.74 +0.8
71,416 + EX31_RS07935 0.75 -1.0
71,416 + EX31_RS07935 0.75 -0.2
71,416 + EX31_RS07935 0.75 +0.8
71,416 + EX31_RS07935 0.75 +0.9
71,416 + EX31_RS07935 0.75 +1.6
71,416 + EX31_RS07935 0.75 -0.9
71,417 - EX31_RS07935 0.75 +0.7
71,417 - EX31_RS07935 0.75 +2.1
71,417 - EX31_RS07935 0.75 -2.4
71,450 - EX31_RS07935 0.79 +0.2
71,535 + EX31_RS07935 0.89 +0.4
71,535 + EX31_RS07935 0.89 +0.1
71,535 + EX31_RS07935 0.89 -0.7
71,535 + EX31_RS07935 0.89 -0.7
71,614 - -1.3
71,621 + +0.6
71,622 - -0.2
71,622 - -1.2
71,687 - -0.7
71,687 - +1.0
71,687 - -0.8
71,707 + +0.4
71,707 + -0.3
71,708 - +0.2
71,711 + +0.6
71,712 - +0.1
71,712 - +1.2
71,712 - +1.4
71,722 - -0.7

Or see this region's nucleotide sequence