Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06570 and EX31_RS06575 are separated by 105 nucleotides EX31_RS06575 and EX31_RS06580 are separated by 48 nucleotides
EX31_RS06570: EX31_RS06570 - nickel/cobalt efflux protein RcnA, at 89,820 to 90,695
_RS06570
EX31_RS06575: EX31_RS06575 - alpha/beta hydrolase, at 90,801 to 91,781
_RS06575
EX31_RS06580: EX31_RS06580 - LysR family transcriptional regulator, at 91,830 to 92,759
_RS06580
Position (kb) 90
91
92 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 89.816 kb on + strand at 89.843 kb on - strand at 89.843 kb on - strand at 89.881 kb on + strand at 89.976 kb on - strand, within EX31_RS06570 at 89.980 kb on + strand, within EX31_RS06570 at 90.008 kb on + strand, within EX31_RS06570 at 90.045 kb on + strand, within EX31_RS06570 at 90.045 kb on + strand, within EX31_RS06570 at 90.045 kb on + strand, within EX31_RS06570 at 90.045 kb on + strand, within EX31_RS06570 at 90.045 kb on + strand, within EX31_RS06570 at 90.045 kb on + strand, within EX31_RS06570 at 90.046 kb on - strand, within EX31_RS06570 at 90.046 kb on - strand, within EX31_RS06570 at 90.046 kb on - strand, within EX31_RS06570 at 90.269 kb on + strand, within EX31_RS06570 at 90.270 kb on - strand, within EX31_RS06570 at 90.270 kb on - strand, within EX31_RS06570 at 90.270 kb on - strand, within EX31_RS06570 at 90.270 kb on - strand, within EX31_RS06570 at 90.471 kb on - strand, within EX31_RS06570 at 90.499 kb on + strand, within EX31_RS06570 at 90.499 kb on + strand, within EX31_RS06570 at 90.535 kb on + strand, within EX31_RS06570 at 90.657 kb on + strand at 90.657 kb on + strand at 90.657 kb on + strand at 90.657 kb on + strand at 90.657 kb on + strand at 90.658 kb on - strand at 90.658 kb on - strand at 90.763 kb on + strand at 90.786 kb on + strand at 90.786 kb on + strand at 90.786 kb on + strand at 91.074 kb on + strand, within EX31_RS06575 at 91.074 kb on + strand, within EX31_RS06575 at 91.147 kb on + strand, within EX31_RS06575 at 91.147 kb on + strand, within EX31_RS06575 at 91.368 kb on + strand, within EX31_RS06575 at 91.471 kb on - strand, within EX31_RS06575 at 91.510 kb on - strand, within EX31_RS06575 at 91.777 kb on + strand at 91.803 kb on + strand at 91.803 kb on + strand at 91.847 kb on + strand at 91.847 kb on + strand at 91.847 kb on + strand at 91.848 kb on - strand at 91.848 kb on - strand at 91.848 kb on - strand at 91.851 kb on + strand at 91.851 kb on + strand at 91.851 kb on + strand at 91.851 kb on + strand at 91.851 kb on + strand at 91.851 kb on + strand at 91.985 kb on + strand, within EX31_RS06580 at 92.052 kb on + strand, within EX31_RS06580 at 92.340 kb on + strand, within EX31_RS06580 at 92.340 kb on + strand, within EX31_RS06580 at 92.341 kb on - strand, within EX31_RS06580 at 92.365 kb on + strand, within EX31_RS06580 at 92.511 kb on - strand, within EX31_RS06580 at 92.776 kb on - strand at 92.781 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 89,816 + -2.6 89,843 - +0.7 89,843 - -0.3 89,881 + +0.7 89,976 - EX31_RS06570 0.18 -0.1 89,980 + EX31_RS06570 0.18 +1.3 90,008 + EX31_RS06570 0.21 +1.9 90,045 + EX31_RS06570 0.26 -0.6 90,045 + EX31_RS06570 0.26 +1.3 90,045 + EX31_RS06570 0.26 +0.9 90,045 + EX31_RS06570 0.26 -1.4 90,045 + EX31_RS06570 0.26 +0.1 90,045 + EX31_RS06570 0.26 -0.1 90,046 - EX31_RS06570 0.26 +0.7 90,046 - EX31_RS06570 0.26 +2.1 90,046 - EX31_RS06570 0.26 +0.7 90,269 + EX31_RS06570 0.51 +0.1 90,270 - EX31_RS06570 0.51 +0.7 90,270 - EX31_RS06570 0.51 +1.4 90,270 - EX31_RS06570 0.51 +0.5 90,270 - EX31_RS06570 0.51 -0.3 90,471 - EX31_RS06570 0.74 +1.3 90,499 + EX31_RS06570 0.78 +1.0 90,499 + EX31_RS06570 0.78 -2.3 90,535 + EX31_RS06570 0.82 +2.0 90,657 + -0.2 90,657 + -0.9 90,657 + -1.6 90,657 + +0.6 90,657 + -0.0 90,658 - +0.1 90,658 - -1.5 90,763 + +0.6 90,786 + +3.0 90,786 + -2.1 90,786 + +1.3 91,074 + EX31_RS06575 0.28 -2.9 91,074 + EX31_RS06575 0.28 -2.0 91,147 + EX31_RS06575 0.35 -0.9 91,147 + EX31_RS06575 0.35 +0.5 91,368 + EX31_RS06575 0.58 +0.7 91,471 - EX31_RS06575 0.68 -0.3 91,510 - EX31_RS06575 0.72 -0.3 91,777 + +0.7 91,803 + +0.5 91,803 + -0.9 91,847 + -0.9 91,847 + -1.0 91,847 + -1.6 91,848 - -1.1 91,848 - +0.0 91,848 - -0.3 91,851 + -0.3 91,851 + -0.5 91,851 + +0.7 91,851 + +0.7 91,851 + -1.6 91,851 + -0.9 91,985 + EX31_RS06580 0.17 +0.3 92,052 + EX31_RS06580 0.24 -0.8 92,340 + EX31_RS06580 0.55 +0.3 92,340 + EX31_RS06580 0.55 +1.7 92,341 - EX31_RS06580 0.55 -1.3 92,365 + EX31_RS06580 0.58 -0.5 92,511 - EX31_RS06580 0.73 -0.9 92,776 - -1.6 92,781 + +1.7
Or see this region's nucleotide sequence