Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06300 and EX31_RS06305 are separated by 157 nucleotides EX31_RS06305 and EX31_RS06310 are separated by 179 nucleotides EX31_RS06310 and EX31_RS06315 are separated by 220 nucleotides
EX31_RS06300: EX31_RS06300 - asparaginase, at 21,599 to 22,612
_RS06300
EX31_RS06305: EX31_RS06305 - signal peptide peptidase SppA, at 22,770 to 24,623
_RS06305
EX31_RS06310: EX31_RS06310 - NAD(P)H nitroreductase, at 24,803 to 25,354
_RS06310
EX31_RS06315: EX31_RS06315 - DNA topoisomerase III, at 25,575 to 27,527
_RS06315
Position (kb) 22
23
24
25 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 21.791 kb on - strand, within EX31_RS06300 at 21.806 kb on - strand, within EX31_RS06300 at 21.932 kb on + strand, within EX31_RS06300 at 22.203 kb on + strand, within EX31_RS06300 at 22.203 kb on + strand, within EX31_RS06300 at 22.203 kb on + strand, within EX31_RS06300 at 22.204 kb on - strand, within EX31_RS06300 at 22.204 kb on - strand, within EX31_RS06300 at 22.204 kb on - strand, within EX31_RS06300 at 22.204 kb on - strand, within EX31_RS06300 at 22.204 kb on - strand, within EX31_RS06300 at 22.204 kb on - strand, within EX31_RS06300 at 22.204 kb on - strand, within EX31_RS06300 at 22.377 kb on + strand, within EX31_RS06300 at 22.391 kb on - strand, within EX31_RS06300 at 22.466 kb on - strand, within EX31_RS06300 at 22.521 kb on - strand at 22.542 kb on + strand at 22.542 kb on + strand at 22.542 kb on + strand at 22.542 kb on + strand at 22.543 kb on - strand at 22.543 kb on - strand at 22.543 kb on - strand at 22.585 kb on - strand at 22.593 kb on + strand at 22.593 kb on + strand at 22.594 kb on - strand at 22.594 kb on - strand at 22.594 kb on - strand at 22.594 kb on - strand at 22.597 kb on + strand at 22.652 kb on + strand at 22.653 kb on - strand at 22.656 kb on + strand at 22.656 kb on + strand at 22.656 kb on + strand at 22.656 kb on + strand at 22.656 kb on + strand at 22.657 kb on - strand at 22.657 kb on - strand at 22.657 kb on - strand at 22.657 kb on - strand at 22.658 kb on + strand at 22.658 kb on + strand at 22.731 kb on - strand at 22.771 kb on + strand at 22.772 kb on - strand at 22.772 kb on - strand at 22.772 kb on - strand at 22.772 kb on - strand at 22.891 kb on + strand at 22.892 kb on - strand at 22.892 kb on - strand at 22.892 kb on - strand at 22.916 kb on + strand at 22.916 kb on + strand at 22.917 kb on - strand at 22.948 kb on - strand at 22.979 kb on - strand, within EX31_RS06305 at 22.979 kb on - strand, within EX31_RS06305 at 23.172 kb on - strand, within EX31_RS06305 at 23.288 kb on - strand, within EX31_RS06305 at 23.305 kb on + strand, within EX31_RS06305 at 23.317 kb on - strand, within EX31_RS06305 at 23.317 kb on - strand, within EX31_RS06305 at 23.368 kb on + strand, within EX31_RS06305 at 23.368 kb on + strand, within EX31_RS06305 at 23.368 kb on + strand, within EX31_RS06305 at 23.368 kb on + strand, within EX31_RS06305 at 23.369 kb on - strand, within EX31_RS06305 at 23.369 kb on - strand, within EX31_RS06305 at 23.369 kb on - strand, within EX31_RS06305 at 23.369 kb on - strand, within EX31_RS06305 at 23.369 kb on - strand, within EX31_RS06305 at 23.369 kb on - strand, within EX31_RS06305 at 23.701 kb on + strand, within EX31_RS06305 at 23.701 kb on + strand, within EX31_RS06305 at 23.702 kb on - strand, within EX31_RS06305 at 23.816 kb on + strand, within EX31_RS06305 at 23.817 kb on - strand, within EX31_RS06305 at 23.909 kb on + strand, within EX31_RS06305 at 23.910 kb on - strand, within EX31_RS06305 at 23.914 kb on + strand, within EX31_RS06305 at 23.914 kb on + strand, within EX31_RS06305 at 23.972 kb on + strand, within EX31_RS06305 at 23.972 kb on + strand, within EX31_RS06305 at 23.972 kb on + strand, within EX31_RS06305 at 23.972 kb on + strand, within EX31_RS06305 at 23.972 kb on + strand, within EX31_RS06305 at 23.972 kb on + strand, within EX31_RS06305 at 23.972 kb on + strand, within EX31_RS06305 at 23.972 kb on + strand, within EX31_RS06305 at 23.972 kb on + strand, within EX31_RS06305 at 23.972 kb on + strand, within EX31_RS06305 at 23.973 kb on - strand, within EX31_RS06305 at 23.973 kb on - strand, within EX31_RS06305 at 23.973 kb on - strand, within EX31_RS06305 at 23.973 kb on - strand, within EX31_RS06305 at 24.006 kb on - strand, within EX31_RS06305 at 24.007 kb on + strand, within EX31_RS06305 at 24.047 kb on + strand, within EX31_RS06305 at 24.067 kb on + strand, within EX31_RS06305 at 24.136 kb on + strand, within EX31_RS06305 at 24.148 kb on + strand, within EX31_RS06305 at 24.149 kb on - strand, within EX31_RS06305 at 24.149 kb on - strand, within EX31_RS06305 at 24.151 kb on + strand, within EX31_RS06305 at 24.151 kb on + strand, within EX31_RS06305 at 24.152 kb on - strand, within EX31_RS06305 at 24.152 kb on - strand, within EX31_RS06305 at 24.152 kb on - strand, within EX31_RS06305 at 24.152 kb on - strand, within EX31_RS06305 at 24.152 kb on - strand, within EX31_RS06305 at 24.152 kb on - strand, within EX31_RS06305 at 24.165 kb on - strand, within EX31_RS06305 at 24.166 kb on + strand, within EX31_RS06305 at 24.166 kb on + strand, within EX31_RS06305 at 24.166 kb on + strand, within EX31_RS06305 at 24.166 kb on + strand, within EX31_RS06305 at 24.167 kb on - strand, within EX31_RS06305 at 24.167 kb on - strand, within EX31_RS06305 at 24.167 kb on - strand, within EX31_RS06305 at 24.167 kb on - strand, within EX31_RS06305 at 24.232 kb on + strand, within EX31_RS06305 at 24.232 kb on + strand, within EX31_RS06305 at 24.277 kb on - strand, within EX31_RS06305 at 24.405 kb on - strand, within EX31_RS06305 at 24.496 kb on + strand at 24.538 kb on - strand at 24.538 kb on - strand at 24.566 kb on + strand at 24.644 kb on + strand at 24.644 kb on + strand at 24.644 kb on + strand at 24.644 kb on + strand at 24.644 kb on + strand at 24.645 kb on - strand at 24.645 kb on - strand at 24.645 kb on - strand at 24.660 kb on - strand at 24.660 kb on - strand at 24.660 kb on - strand at 24.687 kb on + strand at 24.687 kb on + strand at 24.687 kb on + strand at 24.687 kb on + strand at 24.687 kb on + strand at 24.719 kb on - strand at 24.786 kb on - strand at 24.822 kb on + strand at 24.822 kb on + strand at 24.822 kb on + strand at 24.823 kb on - strand at 25.002 kb on + strand, within EX31_RS06310 at 25.070 kb on - strand, within EX31_RS06310 at 25.070 kb on - strand, within EX31_RS06310 at 25.102 kb on + strand, within EX31_RS06310 at 25.103 kb on - strand, within EX31_RS06310 at 25.198 kb on + strand, within EX31_RS06310 at 25.227 kb on + strand, within EX31_RS06310 at 25.227 kb on + strand, within EX31_RS06310 at 25.227 kb on + strand, within EX31_RS06310 at 25.228 kb on - strand, within EX31_RS06310 at 25.228 kb on - strand, within EX31_RS06310 at 25.228 kb on - strand, within EX31_RS06310 at 25.228 kb on - strand, within EX31_RS06310 at 25.278 kb on - strand, within EX31_RS06310 at 25.371 kb on + strand at 25.372 kb on - strand at 25.403 kb on - strand at 25.453 kb on - strand at 25.461 kb on + strand at 25.461 kb on + strand at 25.461 kb on + strand at 25.462 kb on - strand at 25.464 kb on + strand at 25.469 kb on - strand at 25.483 kb on + strand at 25.488 kb on + strand at 25.488 kb on + strand at 25.488 kb on + strand at 25.489 kb on - strand at 25.489 kb on - strand at 25.512 kb on + strand at 25.533 kb on - strand at 25.554 kb on + strand at 25.554 kb on + strand at 25.554 kb on + strand at 25.554 kb on + strand at 25.554 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 21,791 - EX31_RS06300 0.19 -1.3 21,806 - EX31_RS06300 0.20 -1.9 21,932 + EX31_RS06300 0.33 +1.5 22,203 + EX31_RS06300 0.60 +0.7 22,203 + EX31_RS06300 0.60 +1.7 22,203 + EX31_RS06300 0.60 +0.0 22,204 - EX31_RS06300 0.60 -0.2 22,204 - EX31_RS06300 0.60 -1.6 22,204 - EX31_RS06300 0.60 -0.2 22,204 - EX31_RS06300 0.60 -0.3 22,204 - EX31_RS06300 0.60 -0.5 22,204 - EX31_RS06300 0.60 -1.6 22,204 - EX31_RS06300 0.60 +1.0 22,377 + EX31_RS06300 0.77 +0.7 22,391 - EX31_RS06300 0.78 +1.7 22,466 - EX31_RS06300 0.86 -1.3 22,521 - -0.1 22,542 + -1.9 22,542 + +3.7 22,542 + -0.5 22,542 + +1.3 22,543 - -0.9 22,543 - -0.6 22,543 - +0.1 22,585 - -0.9 22,593 + +0.4 22,593 + +0.7 22,594 - +2.5 22,594 - -0.3 22,594 - -1.1 22,594 - -0.6 22,597 + -0.9 22,652 + +2.3 22,653 - -0.3 22,656 + -3.6 22,656 + +0.9 22,656 + +1.3 22,656 + -2.3 22,656 + +0.7 22,657 - +1.7 22,657 - +1.3 22,657 - +0.7 22,657 - -0.9 22,658 + -0.3 22,658 + +0.4 22,731 - +2.3 22,771 + -0.6 22,772 - -1.1 22,772 - +0.2 22,772 - -0.1 22,772 - +1.9 22,891 + +0.7 22,892 - -1.7 22,892 - -0.6 22,892 - +0.7 22,916 + +1.7 22,916 + +0.7 22,917 - +0.5 22,948 - -3.0 22,979 - EX31_RS06305 0.11 +0.7 22,979 - EX31_RS06305 0.11 +0.7 23,172 - EX31_RS06305 0.22 +1.1 23,288 - EX31_RS06305 0.28 +2.3 23,305 + EX31_RS06305 0.29 +1.0 23,317 - EX31_RS06305 0.30 -0.9 23,317 - EX31_RS06305 0.30 -0.0 23,368 + EX31_RS06305 0.32 -0.9 23,368 + EX31_RS06305 0.32 +0.7 23,368 + EX31_RS06305 0.32 +0.3 23,368 + EX31_RS06305 0.32 +0.1 23,369 - EX31_RS06305 0.32 -1.3 23,369 - EX31_RS06305 0.32 -1.4 23,369 - EX31_RS06305 0.32 +1.3 23,369 - EX31_RS06305 0.32 -0.3 23,369 - EX31_RS06305 0.32 -2.3 23,369 - EX31_RS06305 0.32 +0.9 23,701 + EX31_RS06305 0.50 -0.3 23,701 + EX31_RS06305 0.50 -1.1 23,702 - EX31_RS06305 0.50 -0.3 23,816 + EX31_RS06305 0.56 -0.7 23,817 - EX31_RS06305 0.56 -0.2 23,909 + EX31_RS06305 0.61 +0.9 23,910 - EX31_RS06305 0.61 -1.3 23,914 + EX31_RS06305 0.62 +0.4 23,914 + EX31_RS06305 0.62 +1.3 23,972 + EX31_RS06305 0.65 -0.6 23,972 + EX31_RS06305 0.65 -0.5 23,972 + EX31_RS06305 0.65 -0.5 23,972 + EX31_RS06305 0.65 -1.9 23,972 + EX31_RS06305 0.65 -0.3 23,972 + EX31_RS06305 0.65 -0.6 23,972 + EX31_RS06305 0.65 -1.1 23,972 + EX31_RS06305 0.65 +1.8 23,972 + EX31_RS06305 0.65 -0.1 23,972 + EX31_RS06305 0.65 -2.5 23,973 - EX31_RS06305 0.65 -0.8 23,973 - EX31_RS06305 0.65 +0.5 23,973 - EX31_RS06305 0.65 -0.0 23,973 - EX31_RS06305 0.65 +1.3 24,006 - EX31_RS06305 0.67 +0.7 24,007 + EX31_RS06305 0.67 +0.9 24,047 + EX31_RS06305 0.69 +0.7 24,067 + EX31_RS06305 0.70 -0.3 24,136 + EX31_RS06305 0.74 -2.6 24,148 + EX31_RS06305 0.74 +0.7 24,149 - EX31_RS06305 0.74 -0.3 24,149 - EX31_RS06305 0.74 +0.7 24,151 + EX31_RS06305 0.74 -2.1 24,151 + EX31_RS06305 0.74 -0.7 24,152 - EX31_RS06305 0.75 -0.2 24,152 - EX31_RS06305 0.75 +0.2 24,152 - EX31_RS06305 0.75 -1.6 24,152 - EX31_RS06305 0.75 -2.5 24,152 - EX31_RS06305 0.75 -2.3 24,152 - EX31_RS06305 0.75 -1.1 24,165 - EX31_RS06305 0.75 +0.4 24,166 + EX31_RS06305 0.75 -0.3 24,166 + EX31_RS06305 0.75 -0.3 24,166 + EX31_RS06305 0.75 -0.1 24,166 + EX31_RS06305 0.75 -0.3 24,167 - EX31_RS06305 0.75 +1.3 24,167 - EX31_RS06305 0.75 +2.3 24,167 - EX31_RS06305 0.75 -0.3 24,167 - EX31_RS06305 0.75 +0.7 24,232 + EX31_RS06305 0.79 -0.9 24,232 + EX31_RS06305 0.79 -0.9 24,277 - EX31_RS06305 0.81 -1.9 24,405 - EX31_RS06305 0.88 -1.0 24,496 + -0.1 24,538 - -0.3 24,538 - -0.5 24,566 + -2.9 24,644 + +1.8 24,644 + -1.6 24,644 + -0.5 24,644 + -0.3 24,644 + -1.1 24,645 - -0.6 24,645 - -1.1 24,645 - -0.9 24,660 - +0.3 24,660 - +0.3 24,660 - -1.8 24,687 + -0.3 24,687 + -0.3 24,687 + +0.7 24,687 + +0.7 24,687 + -1.1 24,719 - -1.9 24,786 - -0.8 24,822 + +0.7 24,822 + +0.7 24,822 + -0.3 24,823 - -0.5 25,002 + EX31_RS06310 0.36 +0.4 25,070 - EX31_RS06310 0.48 +0.7 25,070 - EX31_RS06310 0.48 +2.7 25,102 + EX31_RS06310 0.54 +3.4 25,103 - EX31_RS06310 0.54 -0.9 25,198 + EX31_RS06310 0.72 -0.3 25,227 + EX31_RS06310 0.77 +1.7 25,227 + EX31_RS06310 0.77 -0.7 25,227 + EX31_RS06310 0.77 -0.7 25,228 - EX31_RS06310 0.77 +0.7 25,228 - EX31_RS06310 0.77 -0.5 25,228 - EX31_RS06310 0.77 -0.3 25,228 - EX31_RS06310 0.77 +1.7 25,278 - EX31_RS06310 0.86 +0.7 25,371 + -1.6 25,372 - +0.5 25,403 - -2.1 25,453 - -0.7 25,461 + +2.3 25,461 + -2.1 25,461 + -0.3 25,462 - -1.1 25,464 + -1.3 25,469 - -1.4 25,483 + -1.1 25,488 + +0.4 25,488 + -1.1 25,488 + -1.2 25,489 - +1.4 25,489 - +1.3 25,512 + +2.5 25,533 - -0.9 25,554 + -0.1 25,554 + +1.7 25,554 + -0.8 25,554 + -0.8 25,554 + +0.7
Or see this region's nucleotide sequence