Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS05170 and EX31_RS05175 are separated by 176 nucleotides EX31_RS05175 and EX31_RS05180 are separated by 66 nucleotides
EX31_RS05170: EX31_RS05170 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 171,451 to 172,293
_RS05170
EX31_RS05175: EX31_RS05175 - glutathione-disulfide reductase, at 172,470 to 173,822
_RS05175
EX31_RS05180: EX31_RS05180 - excinuclease Cho, at 173,889 to 174,740
_RS05180
Position (kb) 172
173
174 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 171.497 kb on + strand at 171.563 kb on - strand, within EX31_RS05170 at 171.563 kb on - strand, within EX31_RS05170 at 171.621 kb on + strand, within EX31_RS05170 at 171.622 kb on - strand, within EX31_RS05170 at 171.670 kb on - strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.692 kb on - strand, within EX31_RS05170 at 171.692 kb on - strand, within EX31_RS05170 at 171.692 kb on - strand, within EX31_RS05170 at 171.692 kb on - strand, within EX31_RS05170 at 171.692 kb on - strand, within EX31_RS05170 at 171.692 kb on - strand, within EX31_RS05170 at 171.692 kb on - strand, within EX31_RS05170 at 171.692 kb on - strand, within EX31_RS05170 at 171.692 kb on - strand, within EX31_RS05170 at 171.692 kb on - strand, within EX31_RS05170 at 171.692 kb on - strand, within EX31_RS05170 at 171.693 kb on + strand, within EX31_RS05170 at 171.693 kb on + strand, within EX31_RS05170 at 171.693 kb on + strand, within EX31_RS05170 at 171.693 kb on + strand, within EX31_RS05170 at 171.693 kb on + strand, within EX31_RS05170 at 171.693 kb on + strand, within EX31_RS05170 at 171.693 kb on + strand, within EX31_RS05170 at 171.693 kb on + strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.736 kb on + strand, within EX31_RS05170 at 171.736 kb on + strand, within EX31_RS05170 at 171.950 kb on - strand, within EX31_RS05170 at 171.980 kb on + strand, within EX31_RS05170 at 171.980 kb on + strand, within EX31_RS05170 at 171.980 kb on + strand, within EX31_RS05170 at 171.981 kb on - strand, within EX31_RS05170 at 171.981 kb on - strand, within EX31_RS05170 at 171.981 kb on - strand, within EX31_RS05170 at 171.981 kb on - strand, within EX31_RS05170 at 172.000 kb on + strand, within EX31_RS05170 at 172.024 kb on + strand, within EX31_RS05170 at 172.024 kb on + strand, within EX31_RS05170 at 172.024 kb on + strand, within EX31_RS05170 at 172.024 kb on + strand, within EX31_RS05170 at 172.025 kb on - strand, within EX31_RS05170 at 172.025 kb on - strand, within EX31_RS05170 at 172.025 kb on - strand, within EX31_RS05170 at 172.105 kb on - strand, within EX31_RS05170 at 172.105 kb on - strand, within EX31_RS05170 at 172.217 kb on + strand at 172.217 kb on + strand at 172.218 kb on - strand at 172.218 kb on - strand at 172.291 kb on + strand at 172.291 kb on + strand at 172.291 kb on + strand at 172.291 kb on + strand at 172.291 kb on + strand at 172.291 kb on + strand at 172.291 kb on + strand at 172.291 kb on + strand at 172.291 kb on + strand at 172.291 kb on + strand at 172.292 kb on - strand at 172.292 kb on - strand at 172.292 kb on - strand at 172.292 kb on - strand at 172.292 kb on - strand at 172.296 kb on - strand at 172.327 kb on - strand at 172.347 kb on + strand at 172.413 kb on + strand at 172.482 kb on + strand at 172.482 kb on + strand at 172.483 kb on - strand at 172.488 kb on + strand at 172.488 kb on + strand at 172.488 kb on + strand at 172.488 kb on + strand at 172.488 kb on + strand at 172.488 kb on + strand at 172.489 kb on - strand at 172.489 kb on - strand at 172.489 kb on - strand at 172.489 kb on - strand at 172.489 kb on - strand at 172.489 kb on - strand at 172.545 kb on + strand at 172.545 kb on + strand at 172.545 kb on + strand at 172.546 kb on - strand at 172.546 kb on - strand at 172.546 kb on - strand at 172.575 kb on - strand at 172.665 kb on + strand, within EX31_RS05175 at 172.665 kb on + strand, within EX31_RS05175 at 172.666 kb on - strand, within EX31_RS05175 at 172.688 kb on + strand, within EX31_RS05175 at 172.740 kb on + strand, within EX31_RS05175 at 172.740 kb on + strand, within EX31_RS05175 at 172.740 kb on + strand, within EX31_RS05175 at 172.741 kb on - strand, within EX31_RS05175 at 172.757 kb on + strand, within EX31_RS05175 at 172.757 kb on + strand, within EX31_RS05175 at 172.765 kb on - strand, within EX31_RS05175 at 172.787 kb on + strand, within EX31_RS05175 at 172.833 kb on - strand, within EX31_RS05175 at 172.833 kb on - strand, within EX31_RS05175 at 172.833 kb on - strand, within EX31_RS05175 at 172.833 kb on - strand, within EX31_RS05175 at 172.998 kb on + strand, within EX31_RS05175 at 172.998 kb on + strand, within EX31_RS05175 at 172.998 kb on + strand, within EX31_RS05175 at 173.000 kb on + strand, within EX31_RS05175 at 173.147 kb on + strand, within EX31_RS05175 at 173.147 kb on + strand, within EX31_RS05175 at 173.148 kb on - strand, within EX31_RS05175 at 173.365 kb on - strand, within EX31_RS05175 at 173.475 kb on + strand, within EX31_RS05175 at 173.475 kb on + strand, within EX31_RS05175 at 173.475 kb on + strand, within EX31_RS05175 at 173.604 kb on + strand, within EX31_RS05175 at 173.604 kb on + strand, within EX31_RS05175 at 173.604 kb on + strand, within EX31_RS05175 at 173.604 kb on + strand, within EX31_RS05175 at 173.604 kb on + strand, within EX31_RS05175 at 173.604 kb on + strand, within EX31_RS05175 at 173.604 kb on + strand, within EX31_RS05175 at 173.605 kb on - strand, within EX31_RS05175 at 173.605 kb on - strand, within EX31_RS05175 at 173.605 kb on - strand, within EX31_RS05175 at 173.605 kb on - strand, within EX31_RS05175 at 173.936 kb on + strand at 173.943 kb on + strand at 173.943 kb on + strand at 173.943 kb on + strand at 173.944 kb on - strand at 173.944 kb on - strand at 173.944 kb on - strand at 173.948 kb on + strand at 173.948 kb on + strand at 173.948 kb on + strand at 173.949 kb on - strand at 173.949 kb on - strand at 173.949 kb on - strand at 173.949 kb on - strand at 173.949 kb on - strand at 173.951 kb on - strand at 174.025 kb on + strand, within EX31_RS05180 at 174.025 kb on + strand, within EX31_RS05180 at 174.026 kb on - strand, within EX31_RS05180 at 174.026 kb on - strand, within EX31_RS05180 at 174.026 kb on - strand, within EX31_RS05180 at 174.038 kb on + strand, within EX31_RS05180 at 174.050 kb on - strand, within EX31_RS05180 at 174.256 kb on + strand, within EX31_RS05180 at 174.257 kb on - strand, within EX31_RS05180 at 174.312 kb on - strand, within EX31_RS05180 at 174.312 kb on - strand, within EX31_RS05180 at 174.330 kb on + strand, within EX31_RS05180 at 174.331 kb on - strand, within EX31_RS05180 at 174.331 kb on - strand, within EX31_RS05180 at 174.375 kb on - strand, within EX31_RS05180 at 174.435 kb on - strand, within EX31_RS05180 at 174.435 kb on - strand, within EX31_RS05180 at 174.435 kb on - strand, within EX31_RS05180 at 174.437 kb on + strand, within EX31_RS05180 at 174.458 kb on + strand, within EX31_RS05180 at 174.530 kb on + strand, within EX31_RS05180 at 174.530 kb on + strand, within EX31_RS05180 at 174.530 kb on + strand, within EX31_RS05180 at 174.530 kb on + strand, within EX31_RS05180 at 174.530 kb on + strand, within EX31_RS05180 at 174.531 kb on - strand, within EX31_RS05180 at 174.531 kb on - strand, within EX31_RS05180 at 174.531 kb on - strand, within EX31_RS05180 at 174.531 kb on - strand, within EX31_RS05180 at 174.531 kb on - strand, within EX31_RS05180 at 174.531 kb on - strand, within EX31_RS05180 at 174.531 kb on - strand, within EX31_RS05180 at 174.605 kb on + strand, within EX31_RS05180 at 174.605 kb on + strand, within EX31_RS05180 at 174.607 kb on + strand, within EX31_RS05180 at 174.607 kb on + strand, within EX31_RS05180 at 174.607 kb on + strand, within EX31_RS05180 at 174.607 kb on + strand, within EX31_RS05180 at 174.607 kb on + strand, within EX31_RS05180 at 174.607 kb on + strand, within EX31_RS05180 at 174.608 kb on - strand, within EX31_RS05180 at 174.608 kb on - strand, within EX31_RS05180 at 174.608 kb on - strand, within EX31_RS05180 at 174.608 kb on - strand, within EX31_RS05180 at 174.663 kb on + strand at 174.673 kb on - strand at 174.673 kb on - strand at 174.704 kb on - strand at 174.723 kb on + strand at 174.723 kb on + strand at 174.743 kb on + strand at 174.774 kb on + strand at 174.775 kb on - strand at 174.776 kb on + strand at 174.777 kb on - strand at 174.806 kb on - strand at 174.807 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 171,497 + -3.3 171,563 - EX31_RS05170 0.13 +1.5 171,563 - EX31_RS05170 0.13 -0.3 171,621 + EX31_RS05170 0.20 -0.7 171,622 - EX31_RS05170 0.20 -1.8 171,670 - EX31_RS05170 0.26 +0.7 171,691 + EX31_RS05170 0.28 -0.5 171,691 + EX31_RS05170 0.28 +0.8 171,691 + EX31_RS05170 0.28 +0.2 171,691 + EX31_RS05170 0.28 -1.0 171,691 + EX31_RS05170 0.28 +0.6 171,691 + EX31_RS05170 0.28 +1.9 171,691 + EX31_RS05170 0.28 +0.2 171,691 + EX31_RS05170 0.28 +0.7 171,691 + EX31_RS05170 0.28 +1.0 171,691 + EX31_RS05170 0.28 -1.1 171,691 + EX31_RS05170 0.28 -0.2 171,691 + EX31_RS05170 0.28 +0.4 171,691 + EX31_RS05170 0.28 -0.2 171,691 + EX31_RS05170 0.28 +0.3 171,691 + EX31_RS05170 0.28 +0.3 171,691 + EX31_RS05170 0.28 +0.6 171,692 - EX31_RS05170 0.29 -1.1 171,692 - EX31_RS05170 0.29 +0.3 171,692 - EX31_RS05170 0.29 -1.5 171,692 - EX31_RS05170 0.29 +0.5 171,692 - EX31_RS05170 0.29 +0.9 171,692 - EX31_RS05170 0.29 +0.5 171,692 - EX31_RS05170 0.29 +0.7 171,692 - EX31_RS05170 0.29 +0.7 171,692 - EX31_RS05170 0.29 -0.4 171,692 - EX31_RS05170 0.29 +0.6 171,692 - EX31_RS05170 0.29 -0.6 171,693 + EX31_RS05170 0.29 +0.4 171,693 + EX31_RS05170 0.29 +0.8 171,693 + EX31_RS05170 0.29 +1.0 171,693 + EX31_RS05170 0.29 -1.1 171,693 + EX31_RS05170 0.29 +0.1 171,693 + EX31_RS05170 0.29 +0.6 171,693 + EX31_RS05170 0.29 -0.3 171,693 + EX31_RS05170 0.29 +0.8 171,694 - EX31_RS05170 0.29 -0.9 171,694 - EX31_RS05170 0.29 -0.5 171,694 - EX31_RS05170 0.29 +0.3 171,694 - EX31_RS05170 0.29 +0.9 171,694 - EX31_RS05170 0.29 +0.8 171,694 - EX31_RS05170 0.29 +3.5 171,694 - EX31_RS05170 0.29 +1.2 171,694 - EX31_RS05170 0.29 -0.9 171,694 - EX31_RS05170 0.29 -0.9 171,694 - EX31_RS05170 0.29 +0.6 171,694 - EX31_RS05170 0.29 -0.5 171,694 - EX31_RS05170 0.29 +0.7 171,694 - EX31_RS05170 0.29 +1.9 171,736 + EX31_RS05170 0.34 +0.5 171,736 + EX31_RS05170 0.34 -2.3 171,950 - EX31_RS05170 0.59 +1.1 171,980 + EX31_RS05170 0.63 -0.2 171,980 + EX31_RS05170 0.63 +1.7 171,980 + EX31_RS05170 0.63 +0.3 171,981 - EX31_RS05170 0.63 +0.7 171,981 - EX31_RS05170 0.63 -1.9 171,981 - EX31_RS05170 0.63 -0.5 171,981 - EX31_RS05170 0.63 -0.1 172,000 + EX31_RS05170 0.65 -0.1 172,024 + EX31_RS05170 0.68 -0.1 172,024 + EX31_RS05170 0.68 +0.3 172,024 + EX31_RS05170 0.68 +0.8 172,024 + EX31_RS05170 0.68 -0.8 172,025 - EX31_RS05170 0.68 +0.1 172,025 - EX31_RS05170 0.68 +0.5 172,025 - EX31_RS05170 0.68 -0.5 172,105 - EX31_RS05170 0.78 +1.1 172,105 - EX31_RS05170 0.78 +1.8 172,217 + +0.1 172,217 + -0.4 172,218 - -0.3 172,218 - +0.9 172,291 + +0.8 172,291 + -1.9 172,291 + -0.0 172,291 + +0.2 172,291 + +1.0 172,291 + -1.1 172,291 + -1.6 172,291 + +1.3 172,291 + -0.0 172,291 + +0.7 172,292 - +1.0 172,292 - -0.5 172,292 - +0.4 172,292 - -0.3 172,292 - +0.8 172,296 - +0.5 172,327 - +0.3 172,347 + +0.6 172,413 + +0.7 172,482 + -0.8 172,482 + +0.1 172,483 - -0.8 172,488 + -0.8 172,488 + -1.6 172,488 + +0.1 172,488 + -1.9 172,488 + +0.2 172,488 + +0.5 172,489 - +0.7 172,489 - -2.1 172,489 - +0.8 172,489 - -1.5 172,489 - +0.5 172,489 - +0.0 172,545 + -0.8 172,545 + -0.8 172,545 + -1.8 172,546 - +1.5 172,546 - +1.3 172,546 - +0.5 172,575 - -0.8 172,665 + EX31_RS05175 0.14 -2.6 172,665 + EX31_RS05175 0.14 +0.1 172,666 - EX31_RS05175 0.14 +0.1 172,688 + EX31_RS05175 0.16 -0.5 172,740 + EX31_RS05175 0.20 -2.7 172,740 + EX31_RS05175 0.20 +1.8 172,740 + EX31_RS05175 0.20 -1.3 172,741 - EX31_RS05175 0.20 -1.1 172,757 + EX31_RS05175 0.21 -0.8 172,757 + EX31_RS05175 0.21 -1.6 172,765 - EX31_RS05175 0.22 +0.2 172,787 + EX31_RS05175 0.23 -0.6 172,833 - EX31_RS05175 0.27 -0.9 172,833 - EX31_RS05175 0.27 +1.2 172,833 - EX31_RS05175 0.27 -2.6 172,833 - EX31_RS05175 0.27 -0.9 172,998 + EX31_RS05175 0.39 -0.1 172,998 + EX31_RS05175 0.39 -0.1 172,998 + EX31_RS05175 0.39 +0.5 173,000 + EX31_RS05175 0.39 -0.5 173,147 + EX31_RS05175 0.50 -1.5 173,147 + EX31_RS05175 0.50 -1.2 173,148 - EX31_RS05175 0.50 -1.6 173,365 - EX31_RS05175 0.66 +0.1 173,475 + EX31_RS05175 0.74 -0.8 173,475 + EX31_RS05175 0.74 -0.1 173,475 + EX31_RS05175 0.74 -0.3 173,604 + EX31_RS05175 0.84 -2.6 173,604 + EX31_RS05175 0.84 -1.3 173,604 + EX31_RS05175 0.84 -0.6 173,604 + EX31_RS05175 0.84 +1.5 173,604 + EX31_RS05175 0.84 -0.6 173,604 + EX31_RS05175 0.84 -0.6 173,604 + EX31_RS05175 0.84 -0.7 173,605 - EX31_RS05175 0.84 -0.5 173,605 - EX31_RS05175 0.84 +2.1 173,605 - EX31_RS05175 0.84 +2.9 173,605 - EX31_RS05175 0.84 -1.1 173,936 + +0.7 173,943 + +1.5 173,943 + +0.2 173,943 + -1.6 173,944 - -0.6 173,944 - -1.0 173,944 - -0.9 173,948 + +0.5 173,948 + -0.1 173,948 + -0.7 173,949 - -0.7 173,949 - +0.2 173,949 - +0.5 173,949 - -0.1 173,949 - +0.1 173,951 - -0.6 174,025 + EX31_RS05180 0.16 -0.5 174,025 + EX31_RS05180 0.16 -1.2 174,026 - EX31_RS05180 0.16 -0.3 174,026 - EX31_RS05180 0.16 +0.3 174,026 - EX31_RS05180 0.16 -0.9 174,038 + EX31_RS05180 0.17 -0.3 174,050 - EX31_RS05180 0.19 +1.3 174,256 + EX31_RS05180 0.43 -0.2 174,257 - EX31_RS05180 0.43 -2.8 174,312 - EX31_RS05180 0.50 -0.3 174,312 - EX31_RS05180 0.50 -1.2 174,330 + EX31_RS05180 0.52 -0.0 174,331 - EX31_RS05180 0.52 +0.3 174,331 - EX31_RS05180 0.52 -2.3 174,375 - EX31_RS05180 0.57 +0.3 174,435 - EX31_RS05180 0.64 -1.5 174,435 - EX31_RS05180 0.64 -0.7 174,435 - EX31_RS05180 0.64 -1.5 174,437 + EX31_RS05180 0.64 -2.5 174,458 + EX31_RS05180 0.67 -1.9 174,530 + EX31_RS05180 0.75 +0.8 174,530 + EX31_RS05180 0.75 -0.9 174,530 + EX31_RS05180 0.75 -0.5 174,530 + EX31_RS05180 0.75 +0.7 174,530 + EX31_RS05180 0.75 +0.8 174,531 - EX31_RS05180 0.75 -1.9 174,531 - EX31_RS05180 0.75 -0.4 174,531 - EX31_RS05180 0.75 -0.1 174,531 - EX31_RS05180 0.75 +1.2 174,531 - EX31_RS05180 0.75 -2.2 174,531 - EX31_RS05180 0.75 -0.1 174,531 - EX31_RS05180 0.75 +0.5 174,605 + EX31_RS05180 0.84 -0.6 174,605 + EX31_RS05180 0.84 +1.3 174,607 + EX31_RS05180 0.84 +1.5 174,607 + EX31_RS05180 0.84 +0.3 174,607 + EX31_RS05180 0.84 +0.6 174,607 + EX31_RS05180 0.84 +1.0 174,607 + EX31_RS05180 0.84 -0.2 174,607 + EX31_RS05180 0.84 -1.4 174,608 - EX31_RS05180 0.84 -0.6 174,608 - EX31_RS05180 0.84 -0.1 174,608 - EX31_RS05180 0.84 +0.3 174,608 - EX31_RS05180 0.84 -0.2 174,663 + -0.5 174,673 - -0.5 174,673 - -1.8 174,704 - -0.1 174,723 + -0.3 174,723 + -3.1 174,743 + -0.9 174,774 + +0.1 174,775 - -2.5 174,776 + +0.9 174,777 - -1.3 174,806 - -1.0 174,807 + -0.6
Or see this region's nucleotide sequence