Strain Fitness in Rahnella sp. WP5 around EX31_RS04275

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS04270 and EX31_RS04275 are separated by 628 nucleotidesEX31_RS04275 and EX31_RS04280 overlap by 23 nucleotides EX31_RS04270: EX31_RS04270 - porin, at 381,228 to 382,354 _RS04270 EX31_RS04275: EX31_RS04275 - hypothetical protein, at 382,983 to 383,318 _RS04275 EX31_RS04280: EX31_RS04280 - alpha/beta hydrolase, at 383,296 to 384,216 _RS04280 Position (kb) 382 383 384Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 382.000 kb on + strand, within EX31_RS04270at 382.002 kb on + strand, within EX31_RS04270at 382.002 kb on + strand, within EX31_RS04270at 382.002 kb on + strand, within EX31_RS04270at 382.002 kb on + strand, within EX31_RS04270at 382.003 kb on - strand, within EX31_RS04270at 382.003 kb on - strand, within EX31_RS04270at 382.003 kb on - strand, within EX31_RS04270at 382.003 kb on - strand, within EX31_RS04270at 382.003 kb on - strand, within EX31_RS04270at 382.016 kb on + strand, within EX31_RS04270at 382.087 kb on + strand, within EX31_RS04270at 382.087 kb on + strand, within EX31_RS04270at 382.087 kb on + strand, within EX31_RS04270at 382.088 kb on - strand, within EX31_RS04270at 382.090 kb on + strand, within EX31_RS04270at 382.091 kb on - strand, within EX31_RS04270at 382.091 kb on - strand, within EX31_RS04270at 382.121 kb on + strand, within EX31_RS04270at 382.121 kb on + strand, within EX31_RS04270at 382.122 kb on - strand, within EX31_RS04270at 382.122 kb on - strand, within EX31_RS04270at 382.123 kb on + strand, within EX31_RS04270at 382.169 kb on + strand, within EX31_RS04270at 382.170 kb on - strand, within EX31_RS04270at 382.171 kb on + strand, within EX31_RS04270at 382.172 kb on - strand, within EX31_RS04270at 382.175 kb on - strand, within EX31_RS04270at 382.230 kb on - strand, within EX31_RS04270at 382.230 kb on - strand, within EX31_RS04270at 382.230 kb on - strand, within EX31_RS04270at 382.230 kb on - strand, within EX31_RS04270at 382.249 kb on + strandat 382.250 kb on - strandat 382.250 kb on - strandat 382.269 kb on - strandat 382.359 kb on - strandat 382.373 kb on - strandat 382.409 kb on - strandat 382.413 kb on - strandat 382.421 kb on + strandat 382.422 kb on - strandat 382.585 kb on - strandat 382.899 kb on + strandat 382.911 kb on + strandat 382.911 kb on + strandat 382.982 kb on + strandat 382.982 kb on + strandat 382.982 kb on + strandat 382.983 kb on - strandat 382.983 kb on - strandat 382.983 kb on - strandat 382.983 kb on - strandat 382.983 kb on - strandat 382.983 kb on - strandat 382.983 kb on - strandat 383.015 kb on + strandat 383.016 kb on - strandat 383.018 kb on + strand, within EX31_RS04275at 383.018 kb on + strand, within EX31_RS04275at 383.018 kb on + strand, within EX31_RS04275at 383.018 kb on + strand, within EX31_RS04275at 383.019 kb on - strand, within EX31_RS04275at 383.019 kb on - strand, within EX31_RS04275at 383.019 kb on - strand, within EX31_RS04275at 383.024 kb on + strand, within EX31_RS04275at 383.024 kb on + strand, within EX31_RS04275at 383.025 kb on - strand, within EX31_RS04275at 383.025 kb on - strand, within EX31_RS04275at 383.025 kb on - strand, within EX31_RS04275at 383.088 kb on + strand, within EX31_RS04275at 383.088 kb on + strand, within EX31_RS04275at 383.088 kb on + strand, within EX31_RS04275at 383.089 kb on - strand, within EX31_RS04275at 383.089 kb on - strand, within EX31_RS04275at 383.089 kb on - strand, within EX31_RS04275at 383.089 kb on - strand, within EX31_RS04275at 383.128 kb on + strand, within EX31_RS04275at 383.149 kb on + strand, within EX31_RS04275at 383.176 kb on + strand, within EX31_RS04275at 383.176 kb on + strand, within EX31_RS04275at 383.176 kb on + strand, within EX31_RS04275at 383.176 kb on + strand, within EX31_RS04275at 383.176 kb on + strand, within EX31_RS04275at 383.177 kb on - strand, within EX31_RS04275at 383.177 kb on - strand, within EX31_RS04275at 383.211 kb on + strand, within EX31_RS04275at 383.255 kb on - strand, within EX31_RS04275at 383.255 kb on - strand, within EX31_RS04275at 383.255 kb on - strand, within EX31_RS04275at 383.297 kb on + strandat 383.297 kb on + strandat 383.298 kb on - strandat 383.304 kb on + strandat 383.346 kb on + strandat 383.402 kb on + strand, within EX31_RS04280at 383.403 kb on - strand, within EX31_RS04280at 383.480 kb on + strand, within EX31_RS04280at 383.481 kb on - strand, within EX31_RS04280at 383.481 kb on - strand, within EX31_RS04280at 383.576 kb on + strand, within EX31_RS04280at 383.577 kb on - strand, within EX31_RS04280at 383.577 kb on - strand, within EX31_RS04280at 383.577 kb on - strand, within EX31_RS04280at 383.618 kb on + strand, within EX31_RS04280at 383.618 kb on + strand, within EX31_RS04280at 383.618 kb on + strand, within EX31_RS04280at 383.619 kb on - strand, within EX31_RS04280at 383.619 kb on - strand, within EX31_RS04280at 383.713 kb on - strand, within EX31_RS04280at 383.820 kb on + strand, within EX31_RS04280at 383.861 kb on + strand, within EX31_RS04280at 383.861 kb on + strand, within EX31_RS04280at 383.862 kb on - strand, within EX31_RS04280at 383.862 kb on - strand, within EX31_RS04280at 383.862 kb on - strand, within EX31_RS04280at 383.862 kb on - strand, within EX31_RS04280at 383.865 kb on + strand, within EX31_RS04280at 383.865 kb on + strand, within EX31_RS04280at 383.865 kb on + strand, within EX31_RS04280at 383.865 kb on + strand, within EX31_RS04280at 383.865 kb on + strand, within EX31_RS04280at 383.865 kb on + strand, within EX31_RS04280at 383.865 kb on + strand, within EX31_RS04280at 383.865 kb on + strand, within EX31_RS04280at 383.865 kb on + strand, within EX31_RS04280at 383.865 kb on + strand, within EX31_RS04280at 383.865 kb on + strand, within EX31_RS04280at 383.865 kb on + strand, within EX31_RS04280at 383.865 kb on + strand, within EX31_RS04280at 383.865 kb on + strand, within EX31_RS04280at 383.865 kb on + strand, within EX31_RS04280at 383.866 kb on + strand, within EX31_RS04280at 383.866 kb on - strand, within EX31_RS04280at 383.866 kb on - strand, within EX31_RS04280at 383.866 kb on - strand, within EX31_RS04280at 383.866 kb on - strand, within EX31_RS04280at 383.866 kb on - strand, within EX31_RS04280at 383.866 kb on - strand, within EX31_RS04280at 383.866 kb on - strand, within EX31_RS04280at 383.866 kb on - strand, within EX31_RS04280at 383.866 kb on - strand, within EX31_RS04280at 383.866 kb on - strand, within EX31_RS04280at 383.915 kb on + strand, within EX31_RS04280at 383.915 kb on + strand, within EX31_RS04280at 383.916 kb on - strand, within EX31_RS04280at 383.916 kb on - strand, within EX31_RS04280at 383.916 kb on - strand, within EX31_RS04280at 383.916 kb on - strand, within EX31_RS04280at 383.918 kb on + strand, within EX31_RS04280at 383.919 kb on - strand, within EX31_RS04280at 383.919 kb on - strand, within EX31_RS04280at 383.919 kb on - strand, within EX31_RS04280at 383.919 kb on - strand, within EX31_RS04280at 383.919 kb on - strand, within EX31_RS04280at 383.919 kb on - strand, within EX31_RS04280at 383.984 kb on + strand, within EX31_RS04280at 383.987 kb on + strand, within EX31_RS04280at 383.987 kb on + strand, within EX31_RS04280at 383.987 kb on + strand, within EX31_RS04280at 383.987 kb on + strand, within EX31_RS04280at 383.987 kb on + strand, within EX31_RS04280at 383.987 kb on + strand, within EX31_RS04280at 383.987 kb on + strand, within EX31_RS04280at 383.987 kb on + strand, within EX31_RS04280at 383.987 kb on + strand, within EX31_RS04280at 383.987 kb on + strand, within EX31_RS04280at 383.987 kb on + strand, within EX31_RS04280at 383.988 kb on - strand, within EX31_RS04280at 383.988 kb on - strand, within EX31_RS04280at 383.988 kb on - strand, within EX31_RS04280at 383.988 kb on - strand, within EX31_RS04280at 383.988 kb on - strand, within EX31_RS04280at 383.988 kb on - strand, within EX31_RS04280at 383.988 kb on - strand, within EX31_RS04280at 383.988 kb on - strand, within EX31_RS04280at 383.992 kb on - strand, within EX31_RS04280at 384.087 kb on + strand, within EX31_RS04280at 384.087 kb on + strand, within EX31_RS04280at 384.114 kb on + strand, within EX31_RS04280at 384.115 kb on - strand, within EX31_RS04280at 384.117 kb on - strand, within EX31_RS04280at 384.245 kb on - strandat 384.245 kb on - strandat 384.248 kb on + strandat 384.248 kb on + strandat 384.248 kb on + strandat 384.248 kb on + strandat 384.248 kb on + strandat 384.248 kb on + strandat 384.248 kb on + strandat 384.249 kb on - strandat 384.249 kb on - strandat 384.249 kb on - strandat 384.249 kb on - strandat 384.249 kb on - strandat 384.249 kb on - strandat 384.249 kb on - strandat 384.251 kb on + strandat 384.251 kb on + strandat 384.251 kb on + strandat 384.252 kb on - strandat 384.252 kb on - strandat 384.252 kb on - strandat 384.252 kb on - strandat 384.252 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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382,000 + EX31_RS04270 0.69 +2.1
382,002 + EX31_RS04270 0.69 -0.8
382,002 + EX31_RS04270 0.69 -0.4
382,002 + EX31_RS04270 0.69 +0.3
382,002 + EX31_RS04270 0.69 -1.1
382,003 - EX31_RS04270 0.69 +1.4
382,003 - EX31_RS04270 0.69 -0.9
382,003 - EX31_RS04270 0.69 -0.0
382,003 - EX31_RS04270 0.69 +0.3
382,003 - EX31_RS04270 0.69 -0.3
382,016 + EX31_RS04270 0.70 +0.5
382,087 + EX31_RS04270 0.76 +1.2
382,087 + EX31_RS04270 0.76 -0.4
382,087 + EX31_RS04270 0.76 +0.1
382,088 - EX31_RS04270 0.76 +1.4
382,090 + EX31_RS04270 0.76 +1.1
382,091 - EX31_RS04270 0.77 +0.4
382,091 - EX31_RS04270 0.77 -0.4
382,121 + EX31_RS04270 0.79 -2.1
382,121 + EX31_RS04270 0.79 +0.7
382,122 - EX31_RS04270 0.79 -0.8
382,122 - EX31_RS04270 0.79 -2.4
382,123 + EX31_RS04270 0.79 +0.2
382,169 + EX31_RS04270 0.83 +1.2
382,170 - EX31_RS04270 0.84 +1.7
382,171 + EX31_RS04270 0.84 +0.2
382,172 - EX31_RS04270 0.84 -0.2
382,175 - EX31_RS04270 0.84 -0.4
382,230 - EX31_RS04270 0.89 +0.4
382,230 - EX31_RS04270 0.89 +1.2
382,230 - EX31_RS04270 0.89 +0.2
382,230 - EX31_RS04270 0.89 +1.0
382,249 + +1.6
382,250 - +0.4
382,250 - +0.9
382,269 - +2.0
382,359 - -2.6
382,373 - +0.4
382,409 - +0.2
382,413 - +1.6
382,421 + +0.1
382,422 - +0.1
382,585 - -0.0
382,899 + -0.0
382,911 + -0.2
382,911 + -1.4
382,982 + -0.4
382,982 + +0.0
382,982 + -0.0
382,983 - -1.1
382,983 - +1.6
382,983 - -2.1
382,983 - +0.2
382,983 - -1.0
382,983 - -1.8
382,983 - -0.5
383,015 + -0.5
383,016 - -0.8
383,018 + EX31_RS04275 0.10 -2.6
383,018 + EX31_RS04275 0.10 +0.5
383,018 + EX31_RS04275 0.10 +0.3
383,018 + EX31_RS04275 0.10 -1.1
383,019 - EX31_RS04275 0.11 -0.4
383,019 - EX31_RS04275 0.11 -0.8
383,019 - EX31_RS04275 0.11 -0.0
383,024 + EX31_RS04275 0.12 -2.0
383,024 + EX31_RS04275 0.12 +0.5
383,025 - EX31_RS04275 0.12 -0.9
383,025 - EX31_RS04275 0.12 -1.4
383,025 - EX31_RS04275 0.12 -1.4
383,088 + EX31_RS04275 0.31 +0.5
383,088 + EX31_RS04275 0.31 -0.6
383,088 + EX31_RS04275 0.31 +0.5
383,089 - EX31_RS04275 0.32 +0.4
383,089 - EX31_RS04275 0.32 -0.6
383,089 - EX31_RS04275 0.32 -2.2
383,089 - EX31_RS04275 0.32 -2.9
383,128 + EX31_RS04275 0.43 -1.6
383,149 + EX31_RS04275 0.49 -1.0
383,176 + EX31_RS04275 0.57 +0.8
383,176 + EX31_RS04275 0.57 +1.0
383,176 + EX31_RS04275 0.57 -0.4
383,176 + EX31_RS04275 0.57 +0.8
383,176 + EX31_RS04275 0.57 -2.8
383,177 - EX31_RS04275 0.58 -1.2
383,177 - EX31_RS04275 0.58 +0.2
383,211 + EX31_RS04275 0.68 -0.9
383,255 - EX31_RS04275 0.81 +0.3
383,255 - EX31_RS04275 0.81 -0.4
383,255 - EX31_RS04275 0.81 -0.0
383,297 + -0.6
383,297 + +1.2
383,298 - +1.3
383,304 + -1.0
383,346 + -0.3
383,402 + EX31_RS04280 0.12 -1.2
383,403 - EX31_RS04280 0.12 +0.8
383,480 + EX31_RS04280 0.20 +0.6
383,481 - EX31_RS04280 0.20 -0.8
383,481 - EX31_RS04280 0.20 +1.0
383,576 + EX31_RS04280 0.30 -1.4
383,577 - EX31_RS04280 0.31 +0.2
383,577 - EX31_RS04280 0.31 -1.0
383,577 - EX31_RS04280 0.31 -0.9
383,618 + EX31_RS04280 0.35 +0.3
383,618 + EX31_RS04280 0.35 +0.4
383,618 + EX31_RS04280 0.35 -0.8
383,619 - EX31_RS04280 0.35 +0.2
383,619 - EX31_RS04280 0.35 +0.7
383,713 - EX31_RS04280 0.45 +0.8
383,820 + EX31_RS04280 0.57 -1.4
383,861 + EX31_RS04280 0.61 -0.4
383,861 + EX31_RS04280 0.61 -0.8
383,862 - EX31_RS04280 0.61 -0.9
383,862 - EX31_RS04280 0.61 -1.4
383,862 - EX31_RS04280 0.61 -0.1
383,862 - EX31_RS04280 0.61 +0.7
383,865 + EX31_RS04280 0.62 -0.6
383,865 + EX31_RS04280 0.62 +1.6
383,865 + EX31_RS04280 0.62 -1.1
383,865 + EX31_RS04280 0.62 +1.1
383,865 + EX31_RS04280 0.62 -0.2
383,865 + EX31_RS04280 0.62 +1.0
383,865 + EX31_RS04280 0.62 +0.5
383,865 + EX31_RS04280 0.62 +0.5
383,865 + EX31_RS04280 0.62 -0.1
383,865 + EX31_RS04280 0.62 +1.8
383,865 + EX31_RS04280 0.62 -1.1
383,865 + EX31_RS04280 0.62 -0.7
383,865 + EX31_RS04280 0.62 -0.7
383,865 + EX31_RS04280 0.62 +0.7
383,865 + EX31_RS04280 0.62 +0.6
383,866 + EX31_RS04280 0.62 -1.1
383,866 - EX31_RS04280 0.62 +0.7
383,866 - EX31_RS04280 0.62 +0.9
383,866 - EX31_RS04280 0.62 -0.5
383,866 - EX31_RS04280 0.62 -0.3
383,866 - EX31_RS04280 0.62 +0.8
383,866 - EX31_RS04280 0.62 +0.5
383,866 - EX31_RS04280 0.62 -1.4
383,866 - EX31_RS04280 0.62 -0.5
383,866 - EX31_RS04280 0.62 +1.2
383,866 - EX31_RS04280 0.62 -0.3
383,915 + EX31_RS04280 0.67 +0.8
383,915 + EX31_RS04280 0.67 +1.2
383,916 - EX31_RS04280 0.67 -1.4
383,916 - EX31_RS04280 0.67 +1.3
383,916 - EX31_RS04280 0.67 +0.3
383,916 - EX31_RS04280 0.67 +1.8
383,918 + EX31_RS04280 0.68 +1.0
383,919 - EX31_RS04280 0.68 -0.4
383,919 - EX31_RS04280 0.68 +0.2
383,919 - EX31_RS04280 0.68 +0.4
383,919 - EX31_RS04280 0.68 +0.4
383,919 - EX31_RS04280 0.68 +1.6
383,919 - EX31_RS04280 0.68 +0.8
383,984 + EX31_RS04280 0.75 -0.4
383,987 + EX31_RS04280 0.75 +0.2
383,987 + EX31_RS04280 0.75 +0.2
383,987 + EX31_RS04280 0.75 -0.9
383,987 + EX31_RS04280 0.75 +0.2
383,987 + EX31_RS04280 0.75 -1.4
383,987 + EX31_RS04280 0.75 +1.2
383,987 + EX31_RS04280 0.75 -0.1
383,987 + EX31_RS04280 0.75 -0.8
383,987 + EX31_RS04280 0.75 -2.5
383,987 + EX31_RS04280 0.75 -0.4
383,987 + EX31_RS04280 0.75 -1.5
383,988 - EX31_RS04280 0.75 -2.2
383,988 - EX31_RS04280 0.75 -0.8
383,988 - EX31_RS04280 0.75 +0.2
383,988 - EX31_RS04280 0.75 -0.6
383,988 - EX31_RS04280 0.75 +0.4
383,988 - EX31_RS04280 0.75 +0.5
383,988 - EX31_RS04280 0.75 +0.5
383,988 - EX31_RS04280 0.75 -0.2
383,992 - EX31_RS04280 0.76 +0.1
384,087 + EX31_RS04280 0.86 +0.5
384,087 + EX31_RS04280 0.86 -0.8
384,114 + EX31_RS04280 0.89 -0.2
384,115 - EX31_RS04280 0.89 -0.3
384,117 - EX31_RS04280 0.89 +0.8
384,245 - +0.2
384,245 - +0.3
384,248 + +2.0
384,248 + +0.9
384,248 + +1.2
384,248 + -0.1
384,248 + +0.9
384,248 + -2.8
384,248 + +0.2
384,249 - -2.2
384,249 - +0.4
384,249 - +0.8
384,249 - -0.8
384,249 - -1.7
384,249 - -0.2
384,249 - +0.6
384,251 + -0.1
384,251 + -2.2
384,251 + -0.0
384,252 - -0.1
384,252 - +0.3
384,252 - -0.5
384,252 - -2.2
384,252 - +0.2

Or see this region's nucleotide sequence