Strain Fitness in Rahnella sp. WP5 around EX31_RS01240

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01230 and EX31_RS01235 are separated by 44 nucleotidesEX31_RS01235 and EX31_RS01240 are separated by 229 nucleotidesEX31_RS01240 and EX31_RS01245 are separated by 70 nucleotides EX31_RS01230: EX31_RS01230 - arsenic transporter, at 273,319 to 274,608 _RS01230 EX31_RS01235: EX31_RS01235 - metalloregulator ArsR/SmtB family transcription factor, at 274,653 to 274,973 _RS01235 EX31_RS01240: EX31_RS01240 - glycoside hydrolase family 10 protein, at 275,203 to 276,588 _RS01240 EX31_RS01245: EX31_RS01245 - ferric-rhodotorulic acid/ferric-coprogen receptor FhuE, at 276,659 to 278,869 _RS01245 Position (kb) 275 276 277Strain fitness (log2 ratio) -2 -1 0 1 2 3at 274.314 kb on + strand, within EX31_RS01230at 274.314 kb on + strand, within EX31_RS01230at 274.324 kb on - strand, within EX31_RS01230at 274.324 kb on - strand, within EX31_RS01230at 274.327 kb on + strand, within EX31_RS01230at 274.328 kb on - strand, within EX31_RS01230at 274.328 kb on - strand, within EX31_RS01230at 274.414 kb on - strand, within EX31_RS01230at 274.454 kb on - strand, within EX31_RS01230at 274.454 kb on - strand, within EX31_RS01230at 274.593 kb on + strandat 274.818 kb on + strand, within EX31_RS01235at 274.819 kb on - strand, within EX31_RS01235at 274.819 kb on - strand, within EX31_RS01235at 274.819 kb on - strand, within EX31_RS01235at 274.819 kb on - strand, within EX31_RS01235at 274.819 kb on - strand, within EX31_RS01235at 274.875 kb on - strand, within EX31_RS01235at 274.974 kb on - strandat 274.974 kb on - strandat 275.063 kb on + strandat 275.171 kb on - strandat 275.250 kb on + strandat 275.327 kb on + strandat 275.484 kb on + strand, within EX31_RS01240at 275.562 kb on + strand, within EX31_RS01240at 275.562 kb on + strand, within EX31_RS01240at 275.563 kb on - strand, within EX31_RS01240at 275.580 kb on + strand, within EX31_RS01240at 275.597 kb on + strand, within EX31_RS01240at 275.597 kb on + strand, within EX31_RS01240at 275.650 kb on - strand, within EX31_RS01240at 275.700 kb on + strand, within EX31_RS01240at 275.701 kb on - strand, within EX31_RS01240at 275.748 kb on + strand, within EX31_RS01240at 275.892 kb on + strand, within EX31_RS01240at 275.977 kb on + strand, within EX31_RS01240at 276.034 kb on + strand, within EX31_RS01240at 276.035 kb on - strand, within EX31_RS01240at 276.035 kb on - strand, within EX31_RS01240at 276.113 kb on + strand, within EX31_RS01240at 276.113 kb on + strand, within EX31_RS01240at 276.229 kb on + strand, within EX31_RS01240at 276.271 kb on + strand, within EX31_RS01240at 276.271 kb on + strand, within EX31_RS01240at 276.271 kb on + strand, within EX31_RS01240at 276.272 kb on - strand, within EX31_RS01240at 276.273 kb on + strand, within EX31_RS01240at 276.273 kb on + strand, within EX31_RS01240at 276.273 kb on + strand, within EX31_RS01240at 276.273 kb on + strand, within EX31_RS01240at 276.273 kb on + strand, within EX31_RS01240at 276.273 kb on + strand, within EX31_RS01240at 276.274 kb on - strand, within EX31_RS01240at 276.366 kb on + strand, within EX31_RS01240at 276.366 kb on + strand, within EX31_RS01240at 276.376 kb on + strand, within EX31_RS01240at 276.394 kb on + strand, within EX31_RS01240at 276.394 kb on + strand, within EX31_RS01240at 276.394 kb on + strand, within EX31_RS01240at 276.394 kb on + strand, within EX31_RS01240at 276.396 kb on + strand, within EX31_RS01240at 276.591 kb on + strandat 276.599 kb on + strandat 276.599 kb on + strandat 276.599 kb on + strandat 276.657 kb on + strandat 276.714 kb on + strandat 276.732 kb on + strandat 276.735 kb on + strandat 276.735 kb on + strandat 276.735 kb on + strandat 276.736 kb on - strandat 276.736 kb on - strandat 276.736 kb on - strandat 276.736 kb on - strandat 276.736 kb on - strandat 276.795 kb on + strandat 276.896 kb on + strand, within EX31_RS01245at 276.973 kb on + strand, within EX31_RS01245at 276.973 kb on + strand, within EX31_RS01245at 276.973 kb on + strand, within EX31_RS01245at 277.014 kb on + strand, within EX31_RS01245at 277.014 kb on + strand, within EX31_RS01245at 277.014 kb on + strand, within EX31_RS01245at 277.110 kb on + strand, within EX31_RS01245at 277.185 kb on - strand, within EX31_RS01245at 277.201 kb on + strand, within EX31_RS01245at 277.229 kb on - strand, within EX31_RS01245at 277.269 kb on + strand, within EX31_RS01245at 277.269 kb on + strand, within EX31_RS01245at 277.270 kb on - strand, within EX31_RS01245at 277.315 kb on + strand, within EX31_RS01245at 277.316 kb on - strand, within EX31_RS01245at 277.316 kb on - strand, within EX31_RS01245at 277.316 kb on - strand, within EX31_RS01245at 277.316 kb on - strand, within EX31_RS01245at 277.317 kb on + strand, within EX31_RS01245at 277.354 kb on - strand, within EX31_RS01245at 277.426 kb on + strand, within EX31_RS01245at 277.427 kb on - strand, within EX31_RS01245at 277.428 kb on + strand, within EX31_RS01245at 277.428 kb on + strand, within EX31_RS01245at 277.524 kb on + strand, within EX31_RS01245

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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274,314 + EX31_RS01230 0.77 -1.3
274,314 + EX31_RS01230 0.77 -0.6
274,324 - EX31_RS01230 0.78 -2.0
274,324 - EX31_RS01230 0.78 +1.8
274,327 + EX31_RS01230 0.78 +2.6
274,328 - EX31_RS01230 0.78 -2.1
274,328 - EX31_RS01230 0.78 -1.3
274,414 - EX31_RS01230 0.85 -0.6
274,454 - EX31_RS01230 0.88 -0.6
274,454 - EX31_RS01230 0.88 -2.1
274,593 + +0.0
274,818 + EX31_RS01235 0.51 +0.0
274,819 - EX31_RS01235 0.52 +2.6
274,819 - EX31_RS01235 0.52 +1.3
274,819 - EX31_RS01235 0.52 +3.5
274,819 - EX31_RS01235 0.52 +1.8
274,819 - EX31_RS01235 0.52 -2.3
274,875 - EX31_RS01235 0.69 -1.6
274,974 - +1.4
274,974 - +1.6
275,063 + +0.0
275,171 - +0.4
275,250 + -0.0
275,327 + -0.9
275,484 + EX31_RS01240 0.20 -0.1
275,562 + EX31_RS01240 0.26 -0.3
275,562 + EX31_RS01240 0.26 -1.4
275,563 - EX31_RS01240 0.26 -0.6
275,580 + EX31_RS01240 0.27 +0.4
275,597 + EX31_RS01240 0.28 +0.2
275,597 + EX31_RS01240 0.28 +0.4
275,650 - EX31_RS01240 0.32 +0.0
275,700 + EX31_RS01240 0.36 +1.3
275,701 - EX31_RS01240 0.36 -2.0
275,748 + EX31_RS01240 0.39 +0.7
275,892 + EX31_RS01240 0.50 -0.8
275,977 + EX31_RS01240 0.56 +0.4
276,034 + EX31_RS01240 0.60 +0.3
276,035 - EX31_RS01240 0.60 +1.0
276,035 - EX31_RS01240 0.60 +0.0
276,113 + EX31_RS01240 0.66 -1.6
276,113 + EX31_RS01240 0.66 +0.9
276,229 + EX31_RS01240 0.74 +1.2
276,271 + EX31_RS01240 0.77 +0.2
276,271 + EX31_RS01240 0.77 -0.4
276,271 + EX31_RS01240 0.77 +0.0
276,272 - EX31_RS01240 0.77 +1.0
276,273 + EX31_RS01240 0.77 -0.1
276,273 + EX31_RS01240 0.77 -2.0
276,273 + EX31_RS01240 0.77 +0.8
276,273 + EX31_RS01240 0.77 +0.6
276,273 + EX31_RS01240 0.77 -0.9
276,273 + EX31_RS01240 0.77 +3.3
276,274 - EX31_RS01240 0.77 +1.0
276,366 + EX31_RS01240 0.84 +1.2
276,366 + EX31_RS01240 0.84 +0.6
276,376 + EX31_RS01240 0.85 -0.3
276,394 + EX31_RS01240 0.86 +0.8
276,394 + EX31_RS01240 0.86 +0.8
276,394 + EX31_RS01240 0.86 +0.0
276,394 + EX31_RS01240 0.86 +1.8
276,396 + EX31_RS01240 0.86 -0.7
276,591 + -1.0
276,599 + +0.2
276,599 + +0.8
276,599 + -1.0
276,657 + +1.4
276,714 + +0.4
276,732 + +0.3
276,735 + -1.4
276,735 + +0.4
276,735 + +0.0
276,736 - -0.3
276,736 - +1.0
276,736 - -1.7
276,736 - -0.0
276,736 - +0.2
276,795 + +1.0
276,896 + EX31_RS01245 0.11 +0.3
276,973 + EX31_RS01245 0.14 +0.3
276,973 + EX31_RS01245 0.14 -0.6
276,973 + EX31_RS01245 0.14 +0.4
277,014 + EX31_RS01245 0.16 -0.6
277,014 + EX31_RS01245 0.16 +0.6
277,014 + EX31_RS01245 0.16 -2.0
277,110 + EX31_RS01245 0.20 +0.2
277,185 - EX31_RS01245 0.24 +0.3
277,201 + EX31_RS01245 0.25 -0.6
277,229 - EX31_RS01245 0.26 +0.8
277,269 + EX31_RS01245 0.28 +0.8
277,269 + EX31_RS01245 0.28 +1.4
277,270 - EX31_RS01245 0.28 +1.0
277,315 + EX31_RS01245 0.30 +0.6
277,316 - EX31_RS01245 0.30 -1.6
277,316 - EX31_RS01245 0.30 -1.0
277,316 - EX31_RS01245 0.30 +0.8
277,316 - EX31_RS01245 0.30 -0.6
277,317 + EX31_RS01245 0.30 -0.8
277,354 - EX31_RS01245 0.31 +0.5
277,426 + EX31_RS01245 0.35 +2.0
277,427 - EX31_RS01245 0.35 -1.0
277,428 + EX31_RS01245 0.35 -1.0
277,428 + EX31_RS01245 0.35 -0.6
277,524 + EX31_RS01245 0.39 -2.1

Or see this region's nucleotide sequence