Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29800 and AO356_29805 are separated by 57 nucleotides AO356_29805 and AO356_29810 overlap by 4 nucleotides AO356_29810 and AO356_29815 are separated by 32 nucleotides
AO356_29800: AO356_29800 - AraC family transcriptional regulator, at 6,929,036 to 6,929,836
_29800
AO356_29805: AO356_29805 - FAD-dependent oxidoreductase, at 6,929,894 to 6,931,318
_29805
AO356_29810: AO356_29810 - cupin, at 6,931,315 to 6,931,656
_29810
AO356_29815: AO356_29815 - spermidine/putrescine ABC transporter substrate-binding protein, at 6,931,689 to 6,932,774
_29815
Position (kb)
6929
6930
6931
6932 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6928.918 kb on + strand at 6928.932 kb on + strand at 6928.932 kb on + strand at 6928.932 kb on + strand at 6928.932 kb on + strand at 6928.932 kb on + strand at 6928.933 kb on - strand at 6928.936 kb on + strand at 6928.936 kb on + strand at 6928.936 kb on + strand at 6928.937 kb on - strand at 6928.938 kb on + strand at 6928.938 kb on + strand at 6928.938 kb on + strand at 6928.938 kb on + strand at 6928.938 kb on + strand at 6928.938 kb on + strand at 6928.939 kb on - strand at 6928.939 kb on - strand at 6928.970 kb on + strand at 6928.971 kb on - strand at 6929.147 kb on + strand, within AO356_29800 at 6929.148 kb on - strand, within AO356_29800 at 6929.148 kb on - strand, within AO356_29800 at 6929.165 kb on + strand, within AO356_29800 at 6929.216 kb on + strand, within AO356_29800 at 6929.216 kb on + strand, within AO356_29800 at 6929.216 kb on + strand, within AO356_29800 at 6929.217 kb on - strand, within AO356_29800 at 6929.217 kb on - strand, within AO356_29800 at 6929.253 kb on - strand, within AO356_29800 at 6929.370 kb on + strand, within AO356_29800 at 6929.392 kb on + strand, within AO356_29800 at 6929.394 kb on + strand, within AO356_29800 at 6929.394 kb on + strand, within AO356_29800 at 6929.402 kb on + strand, within AO356_29800 at 6929.516 kb on + strand, within AO356_29800 at 6929.606 kb on + strand, within AO356_29800 at 6929.606 kb on + strand, within AO356_29800 at 6929.607 kb on - strand at 6929.639 kb on + strand, within AO356_29800 at 6929.646 kb on - strand, within AO356_29800 at 6929.967 kb on - strand at 6930.029 kb on + strand at 6930.030 kb on - strand at 6930.030 kb on - strand at 6930.030 kb on - strand at 6930.030 kb on - strand at 6930.030 kb on - strand at 6930.032 kb on + strand at 6930.166 kb on - strand, within AO356_29805 at 6930.405 kb on + strand, within AO356_29805 at 6930.405 kb on + strand, within AO356_29805 at 6930.405 kb on + strand, within AO356_29805 at 6930.406 kb on - strand, within AO356_29805 at 6930.423 kb on - strand, within AO356_29805 at 6930.474 kb on + strand, within AO356_29805 at 6930.510 kb on + strand, within AO356_29805 at 6930.511 kb on - strand, within AO356_29805 at 6930.614 kb on + strand, within AO356_29805 at 6930.699 kb on + strand, within AO356_29805 at 6930.699 kb on + strand, within AO356_29805 at 6930.699 kb on + strand, within AO356_29805 at 6930.700 kb on - strand, within AO356_29805 at 6930.700 kb on - strand, within AO356_29805 at 6930.761 kb on + strand, within AO356_29805 at 6930.761 kb on + strand, within AO356_29805 at 6930.762 kb on - strand, within AO356_29805 at 6930.887 kb on - strand, within AO356_29805 at 6931.033 kb on - strand, within AO356_29805 at 6931.557 kb on - strand, within AO356_29810 at 6931.557 kb on - strand, within AO356_29810 at 6931.557 kb on - strand, within AO356_29810 at 6931.560 kb on + strand, within AO356_29810 at 6931.560 kb on + strand, within AO356_29810 at 6931.560 kb on + strand, within AO356_29810 at 6931.616 kb on + strand, within AO356_29810 at 6931.616 kb on + strand, within AO356_29810 at 6931.616 kb on + strand, within AO356_29810 at 6931.617 kb on - strand, within AO356_29810 at 6931.617 kb on - strand, within AO356_29810 at 6931.639 kb on + strand at 6931.639 kb on + strand at 6931.640 kb on - strand at 6931.678 kb on + strand at 6931.679 kb on - strand at 6931.785 kb on + strand at 6931.786 kb on - strand at 6931.842 kb on + strand, within AO356_29815 at 6931.852 kb on - strand, within AO356_29815 at 6931.903 kb on - strand, within AO356_29815 at 6931.903 kb on - strand, within AO356_29815 at 6932.128 kb on + strand, within AO356_29815 at 6932.129 kb on - strand, within AO356_29815 at 6932.129 kb on - strand, within AO356_29815 at 6932.241 kb on + strand, within AO356_29815 at 6932.241 kb on + strand, within AO356_29815 at 6932.242 kb on - strand, within AO356_29815 at 6932.242 kb on - strand, within AO356_29815 at 6932.242 kb on - strand, within AO356_29815 at 6932.302 kb on + strand, within AO356_29815 at 6932.303 kb on - strand, within AO356_29815
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 6,928,918 + +0.5 6,928,932 + -1.9 6,928,932 + -0.4 6,928,932 + -0.2 6,928,932 + +0.5 6,928,932 + +0.3 6,928,933 - +0.1 6,928,936 + +0.8 6,928,936 + +0.5 6,928,936 + +0.3 6,928,937 - -0.9 6,928,938 + -0.0 6,928,938 + -0.1 6,928,938 + +0.1 6,928,938 + -0.2 6,928,938 + -0.3 6,928,938 + -0.5 6,928,939 - +0.5 6,928,939 - -1.2 6,928,970 + -0.6 6,928,971 - +0.1 6,929,147 + AO356_29800 0.14 -0.9 6,929,148 - AO356_29800 0.14 +0.4 6,929,148 - AO356_29800 0.14 -0.7 6,929,165 + AO356_29800 0.16 -0.0 6,929,216 + AO356_29800 0.22 -0.5 6,929,216 + AO356_29800 0.22 +0.3 6,929,216 + AO356_29800 0.22 +0.4 6,929,217 - AO356_29800 0.23 -0.3 6,929,217 - AO356_29800 0.23 +0.4 6,929,253 - AO356_29800 0.27 -0.1 6,929,370 + AO356_29800 0.42 -0.2 6,929,392 + AO356_29800 0.44 -0.3 6,929,394 + AO356_29800 0.45 -0.0 6,929,394 + AO356_29800 0.45 -0.4 6,929,402 + AO356_29800 0.46 +0.0 6,929,516 + AO356_29800 0.60 -1.0 6,929,606 + AO356_29800 0.71 -1.0 6,929,606 + AO356_29800 0.71 +0.2 6,929,607 - -1.1 6,929,639 + AO356_29800 0.75 +0.5 6,929,646 - AO356_29800 0.76 +0.8 6,929,967 - +1.0 6,930,029 + -0.1 6,930,030 - -0.7 6,930,030 - -0.2 6,930,030 - +0.1 6,930,030 - -0.9 6,930,030 - +0.3 6,930,032 + +0.5 6,930,166 - AO356_29805 0.19 -0.4 6,930,405 + AO356_29805 0.36 -0.1 6,930,405 + AO356_29805 0.36 -0.1 6,930,405 + AO356_29805 0.36 -0.2 6,930,406 - AO356_29805 0.36 +1.2 6,930,423 - AO356_29805 0.37 +0.2 6,930,474 + AO356_29805 0.41 +0.1 6,930,510 + AO356_29805 0.43 +0.3 6,930,511 - AO356_29805 0.43 -0.5 6,930,614 + AO356_29805 0.51 +0.7 6,930,699 + AO356_29805 0.56 -0.5 6,930,699 + AO356_29805 0.56 -0.9 6,930,699 + AO356_29805 0.56 -0.5 6,930,700 - AO356_29805 0.57 +1.9 6,930,700 - AO356_29805 0.57 +0.1 6,930,761 + AO356_29805 0.61 -0.1 6,930,761 + AO356_29805 0.61 +0.0 6,930,762 - AO356_29805 0.61 -0.9 6,930,887 - AO356_29805 0.70 -0.7 6,931,033 - AO356_29805 0.80 +0.6 6,931,557 - AO356_29810 0.71 -0.8 6,931,557 - AO356_29810 0.71 +0.7 6,931,557 - AO356_29810 0.71 +0.1 6,931,560 + AO356_29810 0.72 -1.1 6,931,560 + AO356_29810 0.72 +0.1 6,931,560 + AO356_29810 0.72 +0.4 6,931,616 + AO356_29810 0.88 +0.9 6,931,616 + AO356_29810 0.88 -0.2 6,931,616 + AO356_29810 0.88 -0.2 6,931,617 - AO356_29810 0.88 -0.4 6,931,617 - AO356_29810 0.88 +0.4 6,931,639 + -2.3 6,931,639 + -0.1 6,931,640 - +0.7 6,931,678 + +0.0 6,931,679 - -0.2 6,931,785 + +1.1 6,931,786 - +0.1 6,931,842 + AO356_29815 0.14 -0.8 6,931,852 - AO356_29815 0.15 +0.3 6,931,903 - AO356_29815 0.20 -0.5 6,931,903 - AO356_29815 0.20 +0.3 6,932,128 + AO356_29815 0.40 +0.6 6,932,129 - AO356_29815 0.41 -0.5 6,932,129 - AO356_29815 0.41 +0.2 6,932,241 + AO356_29815 0.51 +1.0 6,932,241 + AO356_29815 0.51 +0.2 6,932,242 - AO356_29815 0.51 +0.7 6,932,242 - AO356_29815 0.51 +0.4 6,932,242 - AO356_29815 0.51 +0.5 6,932,302 + AO356_29815 0.56 +1.5 6,932,303 - AO356_29815 0.57 +1.5
Or see this region's nucleotide sequence