Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29805

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29800 and AO356_29805 are separated by 57 nucleotidesAO356_29805 and AO356_29810 overlap by 4 nucleotidesAO356_29810 and AO356_29815 are separated by 32 nucleotides AO356_29800: AO356_29800 - AraC family transcriptional regulator, at 6,929,036 to 6,929,836 _29800 AO356_29805: AO356_29805 - FAD-dependent oxidoreductase, at 6,929,894 to 6,931,318 _29805 AO356_29810: AO356_29810 - cupin, at 6,931,315 to 6,931,656 _29810 AO356_29815: AO356_29815 - spermidine/putrescine ABC transporter substrate-binding protein, at 6,931,689 to 6,932,774 _29815 Position (kb) 6929 6930 6931 6932Strain fitness (log2 ratio) -2 -1 0 1 2at 6928.918 kb on + strandat 6928.932 kb on + strandat 6928.932 kb on + strandat 6928.932 kb on + strandat 6928.932 kb on + strandat 6928.932 kb on + strandat 6928.933 kb on - strandat 6928.936 kb on + strandat 6928.936 kb on + strandat 6928.936 kb on + strandat 6928.937 kb on - strandat 6928.938 kb on + strandat 6928.938 kb on + strandat 6928.938 kb on + strandat 6928.938 kb on + strandat 6928.938 kb on + strandat 6928.938 kb on + strandat 6928.939 kb on - strandat 6928.939 kb on - strandat 6928.970 kb on + strandat 6928.971 kb on - strandat 6929.147 kb on + strand, within AO356_29800at 6929.148 kb on - strand, within AO356_29800at 6929.148 kb on - strand, within AO356_29800at 6929.165 kb on + strand, within AO356_29800at 6929.216 kb on + strand, within AO356_29800at 6929.216 kb on + strand, within AO356_29800at 6929.216 kb on + strand, within AO356_29800at 6929.217 kb on - strand, within AO356_29800at 6929.217 kb on - strand, within AO356_29800at 6929.253 kb on - strand, within AO356_29800at 6929.370 kb on + strand, within AO356_29800at 6929.392 kb on + strand, within AO356_29800at 6929.394 kb on + strand, within AO356_29800at 6929.394 kb on + strand, within AO356_29800at 6929.402 kb on + strand, within AO356_29800at 6929.516 kb on + strand, within AO356_29800at 6929.606 kb on + strand, within AO356_29800at 6929.606 kb on + strand, within AO356_29800at 6929.607 kb on - strandat 6929.639 kb on + strand, within AO356_29800at 6929.646 kb on - strand, within AO356_29800at 6929.967 kb on - strandat 6930.029 kb on + strandat 6930.030 kb on - strandat 6930.030 kb on - strandat 6930.030 kb on - strandat 6930.030 kb on - strandat 6930.030 kb on - strandat 6930.032 kb on + strandat 6930.166 kb on - strand, within AO356_29805at 6930.405 kb on + strand, within AO356_29805at 6930.405 kb on + strand, within AO356_29805at 6930.405 kb on + strand, within AO356_29805at 6930.406 kb on - strand, within AO356_29805at 6930.423 kb on - strand, within AO356_29805at 6930.474 kb on + strand, within AO356_29805at 6930.510 kb on + strand, within AO356_29805at 6930.511 kb on - strand, within AO356_29805at 6930.614 kb on + strand, within AO356_29805at 6930.699 kb on + strand, within AO356_29805at 6930.699 kb on + strand, within AO356_29805at 6930.699 kb on + strand, within AO356_29805at 6930.700 kb on - strand, within AO356_29805at 6930.700 kb on - strand, within AO356_29805at 6930.761 kb on + strand, within AO356_29805at 6930.761 kb on + strand, within AO356_29805at 6930.762 kb on - strand, within AO356_29805at 6930.887 kb on - strand, within AO356_29805at 6931.033 kb on - strand, within AO356_29805at 6931.557 kb on - strand, within AO356_29810at 6931.557 kb on - strand, within AO356_29810at 6931.557 kb on - strand, within AO356_29810at 6931.560 kb on + strand, within AO356_29810at 6931.560 kb on + strand, within AO356_29810at 6931.560 kb on + strand, within AO356_29810at 6931.616 kb on + strand, within AO356_29810at 6931.616 kb on + strand, within AO356_29810at 6931.616 kb on + strand, within AO356_29810at 6931.617 kb on - strand, within AO356_29810at 6931.617 kb on - strand, within AO356_29810at 6931.639 kb on + strandat 6931.639 kb on + strandat 6931.640 kb on - strandat 6931.678 kb on + strandat 6931.679 kb on - strandat 6931.785 kb on + strandat 6931.786 kb on - strandat 6931.842 kb on + strand, within AO356_29815at 6931.852 kb on - strand, within AO356_29815at 6931.903 kb on - strand, within AO356_29815at 6931.903 kb on - strand, within AO356_29815at 6932.128 kb on + strand, within AO356_29815at 6932.129 kb on - strand, within AO356_29815at 6932.129 kb on - strand, within AO356_29815at 6932.241 kb on + strand, within AO356_29815at 6932.241 kb on + strand, within AO356_29815at 6932.242 kb on - strand, within AO356_29815at 6932.242 kb on - strand, within AO356_29815at 6932.242 kb on - strand, within AO356_29815at 6932.302 kb on + strand, within AO356_29815at 6932.303 kb on - strand, within AO356_29815

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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6,928,918 + +0.5
6,928,932 + -1.9
6,928,932 + -0.4
6,928,932 + -0.2
6,928,932 + +0.5
6,928,932 + +0.3
6,928,933 - +0.1
6,928,936 + +0.8
6,928,936 + +0.5
6,928,936 + +0.3
6,928,937 - -0.9
6,928,938 + -0.0
6,928,938 + -0.1
6,928,938 + +0.1
6,928,938 + -0.2
6,928,938 + -0.3
6,928,938 + -0.5
6,928,939 - +0.5
6,928,939 - -1.2
6,928,970 + -0.6
6,928,971 - +0.1
6,929,147 + AO356_29800 0.14 -0.9
6,929,148 - AO356_29800 0.14 +0.4
6,929,148 - AO356_29800 0.14 -0.7
6,929,165 + AO356_29800 0.16 -0.0
6,929,216 + AO356_29800 0.22 -0.5
6,929,216 + AO356_29800 0.22 +0.3
6,929,216 + AO356_29800 0.22 +0.4
6,929,217 - AO356_29800 0.23 -0.3
6,929,217 - AO356_29800 0.23 +0.4
6,929,253 - AO356_29800 0.27 -0.1
6,929,370 + AO356_29800 0.42 -0.2
6,929,392 + AO356_29800 0.44 -0.3
6,929,394 + AO356_29800 0.45 -0.0
6,929,394 + AO356_29800 0.45 -0.4
6,929,402 + AO356_29800 0.46 +0.0
6,929,516 + AO356_29800 0.60 -1.0
6,929,606 + AO356_29800 0.71 -1.0
6,929,606 + AO356_29800 0.71 +0.2
6,929,607 - -1.1
6,929,639 + AO356_29800 0.75 +0.5
6,929,646 - AO356_29800 0.76 +0.8
6,929,967 - +1.0
6,930,029 + -0.1
6,930,030 - -0.7
6,930,030 - -0.2
6,930,030 - +0.1
6,930,030 - -0.9
6,930,030 - +0.3
6,930,032 + +0.5
6,930,166 - AO356_29805 0.19 -0.4
6,930,405 + AO356_29805 0.36 -0.1
6,930,405 + AO356_29805 0.36 -0.1
6,930,405 + AO356_29805 0.36 -0.2
6,930,406 - AO356_29805 0.36 +1.2
6,930,423 - AO356_29805 0.37 +0.2
6,930,474 + AO356_29805 0.41 +0.1
6,930,510 + AO356_29805 0.43 +0.3
6,930,511 - AO356_29805 0.43 -0.5
6,930,614 + AO356_29805 0.51 +0.7
6,930,699 + AO356_29805 0.56 -0.5
6,930,699 + AO356_29805 0.56 -0.9
6,930,699 + AO356_29805 0.56 -0.5
6,930,700 - AO356_29805 0.57 +1.9
6,930,700 - AO356_29805 0.57 +0.1
6,930,761 + AO356_29805 0.61 -0.1
6,930,761 + AO356_29805 0.61 +0.0
6,930,762 - AO356_29805 0.61 -0.9
6,930,887 - AO356_29805 0.70 -0.7
6,931,033 - AO356_29805 0.80 +0.6
6,931,557 - AO356_29810 0.71 -0.8
6,931,557 - AO356_29810 0.71 +0.7
6,931,557 - AO356_29810 0.71 +0.1
6,931,560 + AO356_29810 0.72 -1.1
6,931,560 + AO356_29810 0.72 +0.1
6,931,560 + AO356_29810 0.72 +0.4
6,931,616 + AO356_29810 0.88 +0.9
6,931,616 + AO356_29810 0.88 -0.2
6,931,616 + AO356_29810 0.88 -0.2
6,931,617 - AO356_29810 0.88 -0.4
6,931,617 - AO356_29810 0.88 +0.4
6,931,639 + -2.3
6,931,639 + -0.1
6,931,640 - +0.7
6,931,678 + +0.0
6,931,679 - -0.2
6,931,785 + +1.1
6,931,786 - +0.1
6,931,842 + AO356_29815 0.14 -0.8
6,931,852 - AO356_29815 0.15 +0.3
6,931,903 - AO356_29815 0.20 -0.5
6,931,903 - AO356_29815 0.20 +0.3
6,932,128 + AO356_29815 0.40 +0.6
6,932,129 - AO356_29815 0.41 -0.5
6,932,129 - AO356_29815 0.41 +0.2
6,932,241 + AO356_29815 0.51 +1.0
6,932,241 + AO356_29815 0.51 +0.2
6,932,242 - AO356_29815 0.51 +0.7
6,932,242 - AO356_29815 0.51 +0.4
6,932,242 - AO356_29815 0.51 +0.5
6,932,302 + AO356_29815 0.56 +1.5
6,932,303 - AO356_29815 0.57 +1.5

Or see this region's nucleotide sequence