Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_05785

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_05780 and AO356_05785 are separated by 9 nucleotidesAO356_05785 and AO356_05790 overlap by 8 nucleotidesAO356_05790 and AO356_05795 overlap by 1 nucleotides AO356_05780: AO356_05780 - phage tail protein, at 1,284,794 to 1,285,810 _05780 AO356_05785: AO356_05785 - phage tail protein, at 1,285,820 to 1,286,032 _05785 AO356_05790: AO356_05790 - hypothetical protein, at 1,286,025 to 1,286,408 _05790 AO356_05795: AO356_05795 - phage tail protein, at 1,286,408 to 1,288,588 _05795 Position (kb) 1285 1286 1287Strain fitness (log2 ratio) -1 0 1at 1284.838 kb on - strandat 1285.002 kb on - strand, within AO356_05780at 1285.140 kb on + strand, within AO356_05780at 1285.140 kb on + strand, within AO356_05780at 1285.140 kb on + strand, within AO356_05780at 1285.140 kb on + strand, within AO356_05780at 1285.141 kb on - strand, within AO356_05780at 1285.281 kb on + strand, within AO356_05780at 1285.281 kb on + strand, within AO356_05780at 1285.281 kb on + strand, within AO356_05780at 1285.282 kb on - strand, within AO356_05780at 1285.282 kb on - strand, within AO356_05780at 1285.282 kb on - strand, within AO356_05780at 1285.282 kb on - strand, within AO356_05780at 1285.282 kb on - strand, within AO356_05780at 1285.282 kb on - strand, within AO356_05780at 1285.282 kb on - strand, within AO356_05780at 1285.282 kb on - strand, within AO356_05780at 1285.776 kb on + strandat 1285.957 kb on + strand, within AO356_05785at 1285.957 kb on + strand, within AO356_05785at 1285.983 kb on + strand, within AO356_05785at 1286.027 kb on - strandat 1286.228 kb on - strand, within AO356_05790at 1286.228 kb on - strand, within AO356_05790at 1286.337 kb on + strand, within AO356_05790at 1286.350 kb on + strand, within AO356_05790at 1286.413 kb on + strandat 1286.413 kb on + strandat 1286.414 kb on - strandat 1286.414 kb on - strandat 1286.414 kb on - strandat 1286.550 kb on + strandat 1286.550 kb on + strandat 1286.550 kb on + strandat 1286.550 kb on + strandat 1286.550 kb on + strandat 1286.551 kb on - strandat 1286.925 kb on - strand, within AO356_05795

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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1,284,838 - +0.9
1,285,002 - AO356_05780 0.20 -0.3
1,285,140 + AO356_05780 0.34 +0.1
1,285,140 + AO356_05780 0.34 +0.6
1,285,140 + AO356_05780 0.34 -1.2
1,285,140 + AO356_05780 0.34 -0.0
1,285,141 - AO356_05780 0.34 -0.1
1,285,281 + AO356_05780 0.48 -1.4
1,285,281 + AO356_05780 0.48 +1.0
1,285,281 + AO356_05780 0.48 +0.4
1,285,282 - AO356_05780 0.48 +0.3
1,285,282 - AO356_05780 0.48 +0.4
1,285,282 - AO356_05780 0.48 -0.2
1,285,282 - AO356_05780 0.48 +0.4
1,285,282 - AO356_05780 0.48 +0.3
1,285,282 - AO356_05780 0.48 +1.0
1,285,282 - AO356_05780 0.48 -0.7
1,285,282 - AO356_05780 0.48 +0.1
1,285,776 + -0.1
1,285,957 + AO356_05785 0.64 +0.1
1,285,957 + AO356_05785 0.64 -0.4
1,285,983 + AO356_05785 0.77 -0.2
1,286,027 - -0.4
1,286,228 - AO356_05790 0.53 +0.2
1,286,228 - AO356_05790 0.53 +1.0
1,286,337 + AO356_05790 0.81 +0.4
1,286,350 + AO356_05790 0.85 -0.1
1,286,413 + +0.3
1,286,413 + +0.4
1,286,414 - -0.3
1,286,414 - -0.0
1,286,414 - +0.4
1,286,550 + +0.9
1,286,550 + +0.9
1,286,550 + +0.3
1,286,550 + -0.8
1,286,550 + +0.4
1,286,551 - +0.0
1,286,925 - AO356_05795 0.24 +0.3

Or see this region's nucleotide sequence