Experiment: MOKA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.972.1 and Xcc-8004.973.1 are separated by 39 nucleotides Xcc-8004.973.1 and Xcc-8004.974.1 overlap by 4 nucleotides Xcc-8004.974.1 and Xcc-8004.976.1 are separated by 12 nucleotides
Xcc-8004.972.1: Xcc-8004.972.1 - Glutamate--cysteine ligase (EC 6.3.2.2), at 923,649 to 925,286
Xcc-8004.972.1
Xcc-8004.973.1: Xcc-8004.973.1 - Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-), at 925,326 to 926,822
Xcc-8004.973.1
Xcc-8004.974.1: Xcc-8004.974.1 - two-component system regulatory protein, at 926,819 to 927,661
Xcc-8004.974.1
Xcc-8004.976.1: Xcc-8004.976.1 - FIG01209789: hypothetical protein, at 927,674 to 928,771
Xcc-8004.976.1
Position (kb) 925
926
927 Strain fitness (log2 ratio) -2
-1
0
1 at 925.281 kb on + strand at 925.610 kb on - strand, within Xcc-8004.973.1 at 925.610 kb on - strand, within Xcc-8004.973.1 at 925.724 kb on + strand, within Xcc-8004.973.1 at 925.724 kb on + strand, within Xcc-8004.973.1 at 925.724 kb on + strand, within Xcc-8004.973.1 at 925.725 kb on - strand, within Xcc-8004.973.1 at 925.725 kb on - strand, within Xcc-8004.973.1 at 926.512 kb on + strand, within Xcc-8004.973.1 at 926.512 kb on + strand, within Xcc-8004.973.1 at 926.513 kb on - strand, within Xcc-8004.973.1 at 926.701 kb on + strand at 926.701 kb on + strand at 926.701 kb on + strand at 926.701 kb on + strand at 926.702 kb on - strand at 926.850 kb on + strand at 926.850 kb on + strand at 926.850 kb on + strand at 926.850 kb on + strand at 926.851 kb on - strand at 926.851 kb on - strand at 926.851 kb on - strand at 926.851 kb on - strand at 926.851 kb on - strand at 926.851 kb on - strand at 926.851 kb on - strand at 926.946 kb on + strand, within Xcc-8004.974.1 at 926.946 kb on + strand, within Xcc-8004.974.1 at 926.947 kb on - strand, within Xcc-8004.974.1 at 926.974 kb on - strand, within Xcc-8004.974.1 at 927.068 kb on - strand, within Xcc-8004.974.1 at 927.127 kb on - strand, within Xcc-8004.974.1 at 927.127 kb on - strand, within Xcc-8004.974.1 at 927.232 kb on - strand, within Xcc-8004.974.1 at 927.271 kb on + strand, within Xcc-8004.974.1 at 927.271 kb on + strand, within Xcc-8004.974.1 at 927.271 kb on + strand, within Xcc-8004.974.1 at 927.272 kb on - strand, within Xcc-8004.974.1 at 927.272 kb on - strand, within Xcc-8004.974.1 at 927.272 kb on - strand, within Xcc-8004.974.1 at 927.272 kb on - strand, within Xcc-8004.974.1 at 927.272 kb on - strand, within Xcc-8004.974.1 at 927.272 kb on - strand, within Xcc-8004.974.1 at 927.377 kb on + strand, within Xcc-8004.974.1 at 927.377 kb on + strand, within Xcc-8004.974.1 at 927.378 kb on - strand, within Xcc-8004.974.1 at 927.378 kb on - strand, within Xcc-8004.974.1 at 927.378 kb on - strand, within Xcc-8004.974.1 at 927.378 kb on - strand, within Xcc-8004.974.1 at 927.450 kb on + strand, within Xcc-8004.974.1 at 927.451 kb on - strand, within Xcc-8004.974.1 at 927.451 kb on - strand, within Xcc-8004.974.1 at 927.631 kb on + strand at 927.631 kb on + strand at 927.632 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MOKA remove 925,281 + +0.3 925,610 - Xcc-8004.973.1 0.19 -0.4 925,610 - Xcc-8004.973.1 0.19 +0.3 925,724 + Xcc-8004.973.1 0.27 -0.2 925,724 + Xcc-8004.973.1 0.27 -1.4 925,724 + Xcc-8004.973.1 0.27 -0.5 925,725 - Xcc-8004.973.1 0.27 -0.4 925,725 - Xcc-8004.973.1 0.27 -0.7 926,512 + Xcc-8004.973.1 0.79 -1.8 926,512 + Xcc-8004.973.1 0.79 -0.2 926,513 - Xcc-8004.973.1 0.79 -0.7 926,701 + +0.4 926,701 + -0.1 926,701 + -0.4 926,701 + -2.6 926,702 - +0.6 926,850 + -0.6 926,850 + -0.6 926,850 + -0.1 926,850 + +0.7 926,851 - +1.2 926,851 - -0.4 926,851 - -0.3 926,851 - +0.3 926,851 - +0.4 926,851 - +1.3 926,851 - -0.4 926,946 + Xcc-8004.974.1 0.15 +0.1 926,946 + Xcc-8004.974.1 0.15 -0.2 926,947 - Xcc-8004.974.1 0.15 -0.2 926,974 - Xcc-8004.974.1 0.18 +0.3 927,068 - Xcc-8004.974.1 0.30 -0.7 927,127 - Xcc-8004.974.1 0.37 -0.3 927,127 - Xcc-8004.974.1 0.37 +0.5 927,232 - Xcc-8004.974.1 0.49 +0.5 927,271 + Xcc-8004.974.1 0.54 +0.1 927,271 + Xcc-8004.974.1 0.54 +0.4 927,271 + Xcc-8004.974.1 0.54 +0.1 927,272 - Xcc-8004.974.1 0.54 -0.0 927,272 - Xcc-8004.974.1 0.54 -0.5 927,272 - Xcc-8004.974.1 0.54 -0.8 927,272 - Xcc-8004.974.1 0.54 -0.5 927,272 - Xcc-8004.974.1 0.54 -0.1 927,272 - Xcc-8004.974.1 0.54 +0.4 927,377 + Xcc-8004.974.1 0.66 +0.2 927,377 + Xcc-8004.974.1 0.66 -0.2 927,378 - Xcc-8004.974.1 0.66 +0.2 927,378 - Xcc-8004.974.1 0.66 -0.2 927,378 - Xcc-8004.974.1 0.66 -0.6 927,378 - Xcc-8004.974.1 0.66 +0.3 927,450 + Xcc-8004.974.1 0.75 +0.3 927,451 - Xcc-8004.974.1 0.75 -0.4 927,451 - Xcc-8004.974.1 0.75 -0.8 927,631 + -0.4 927,631 + -1.0 927,632 - -0.4
Or see this region's nucleotide sequence