Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.965.1

Experiment: MOKA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.964.1 and Xcc-8004.965.1 are separated by 90 nucleotidesXcc-8004.965.1 and Xcc-8004.966.1 are separated by 40 nucleotides Xcc-8004.964.1: Xcc-8004.964.1 - Choline dehydrogenase (EC 1.1.99.1), at 914,024 to 915,694 Xcc-8004.964.1 Xcc-8004.965.1: Xcc-8004.965.1 - Betaine aldehyde dehydrogenase (EC 1.2.1.8), at 915,785 to 917,257 Xcc-8004.965.1 Xcc-8004.966.1: Xcc-8004.966.1 - High-affinity choline uptake protein BetT, at 917,298 to 919,277 Xcc-8004.966.1 Position (kb) 915 916 917 918Strain fitness (log2 ratio) -1 0 1 2at 914.927 kb on + strand, within Xcc-8004.964.1at 914.928 kb on - strand, within Xcc-8004.964.1at 914.979 kb on + strand, within Xcc-8004.964.1at 915.277 kb on - strand, within Xcc-8004.964.1at 915.318 kb on + strand, within Xcc-8004.964.1at 915.402 kb on + strand, within Xcc-8004.964.1at 915.403 kb on - strand, within Xcc-8004.964.1at 915.403 kb on - strand, within Xcc-8004.964.1at 915.403 kb on - strand, within Xcc-8004.964.1at 915.403 kb on - strand, within Xcc-8004.964.1at 915.403 kb on - strand, within Xcc-8004.964.1at 915.403 kb on - strand, within Xcc-8004.964.1at 915.498 kb on + strand, within Xcc-8004.964.1at 915.641 kb on + strandat 915.641 kb on + strandat 915.641 kb on + strandat 915.642 kb on - strandat 915.675 kb on + strandat 915.676 kb on - strandat 915.676 kb on - strandat 915.681 kb on + strandat 915.764 kb on + strandat 915.764 kb on + strandat 915.801 kb on + strandat 915.841 kb on - strandat 916.155 kb on + strand, within Xcc-8004.965.1at 916.155 kb on + strand, within Xcc-8004.965.1at 916.155 kb on + strand, within Xcc-8004.965.1at 916.156 kb on - strand, within Xcc-8004.965.1at 916.420 kb on - strand, within Xcc-8004.965.1at 916.797 kb on + strand, within Xcc-8004.965.1at 916.848 kb on + strand, within Xcc-8004.965.1at 916.911 kb on + strand, within Xcc-8004.965.1at 916.912 kb on - strand, within Xcc-8004.965.1at 916.912 kb on - strand, within Xcc-8004.965.1at 916.915 kb on - strand, within Xcc-8004.965.1at 917.214 kb on + strandat 917.214 kb on + strandat 917.214 kb on + strandat 917.229 kb on + strandat 917.230 kb on - strandat 917.336 kb on - strandat 917.390 kb on - strandat 917.413 kb on + strandat 917.413 kb on + strandat 917.414 kb on - strandat 917.414 kb on - strandat 917.429 kb on - strandat 917.429 kb on - strandat 917.641 kb on + strand, within Xcc-8004.966.1at 917.641 kb on + strand, within Xcc-8004.966.1at 918.083 kb on - strand, within Xcc-8004.966.1at 918.083 kb on - strand, within Xcc-8004.966.1at 918.255 kb on - strand, within Xcc-8004.966.1

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Per-strain Table

Position Strand Gene LocusTag Fraction MOKA
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914,927 + Xcc-8004.964.1 0.54 -0.1
914,928 - Xcc-8004.964.1 0.54 +0.2
914,979 + Xcc-8004.964.1 0.57 -1.3
915,277 - Xcc-8004.964.1 0.75 +2.2
915,318 + Xcc-8004.964.1 0.77 +0.8
915,402 + Xcc-8004.964.1 0.82 +0.5
915,403 - Xcc-8004.964.1 0.83 -0.2
915,403 - Xcc-8004.964.1 0.83 -0.4
915,403 - Xcc-8004.964.1 0.83 -0.6
915,403 - Xcc-8004.964.1 0.83 -0.6
915,403 - Xcc-8004.964.1 0.83 -0.1
915,403 - Xcc-8004.964.1 0.83 -0.1
915,498 + Xcc-8004.964.1 0.88 -0.0
915,641 + +0.2
915,641 + -1.6
915,641 + +1.5
915,642 - -0.1
915,675 + +0.4
915,676 - +0.3
915,676 - -0.2
915,681 + -1.4
915,764 + +0.4
915,764 + +0.2
915,801 + +0.6
915,841 - -1.1
916,155 + Xcc-8004.965.1 0.25 +0.7
916,155 + Xcc-8004.965.1 0.25 +1.0
916,155 + Xcc-8004.965.1 0.25 -0.0
916,156 - Xcc-8004.965.1 0.25 +1.0
916,420 - Xcc-8004.965.1 0.43 +0.5
916,797 + Xcc-8004.965.1 0.69 -0.5
916,848 + Xcc-8004.965.1 0.72 -0.3
916,911 + Xcc-8004.965.1 0.76 +0.3
916,912 - Xcc-8004.965.1 0.77 +0.3
916,912 - Xcc-8004.965.1 0.77 +0.6
916,915 - Xcc-8004.965.1 0.77 +0.6
917,214 + -0.6
917,214 + -1.3
917,214 + -0.6
917,229 + +0.1
917,230 - -0.6
917,336 - +1.8
917,390 - -0.7
917,413 + -0.0
917,413 + -1.2
917,414 - -0.8
917,414 - -0.2
917,429 - +0.8
917,429 - -0.6
917,641 + Xcc-8004.966.1 0.17 +0.4
917,641 + Xcc-8004.966.1 0.17 -0.3
918,083 - Xcc-8004.966.1 0.40 -0.5
918,083 - Xcc-8004.966.1 0.40 -0.7
918,255 - Xcc-8004.966.1 0.48 -0.0

Or see this region's nucleotide sequence