Experiment: MOKA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.908.1 and Xcc-8004.909.1 are separated by 321 nucleotides Xcc-8004.909.1 and Xcc-8004.910.1 are separated by 74 nucleotides Xcc-8004.910.1 and Xcc-8004.911.1 are separated by 14 nucleotides
Xcc-8004.908.1: Xcc-8004.908.1 - Type I secretion system, outer membrane component LapE, at 852,407 to 853,468
Xcc-8004.908.1
Xcc-8004.909.1: Xcc-8004.909.1 - FIG01211604: hypothetical protein, at 853,790 to 854,773
Xcc-8004.909.1
Xcc-8004.910.1: Xcc-8004.910.1 - Proposed lipoate regulatory protein YbeD, at 854,848 to 855,177
Xcc-8004.910.1
Xcc-8004.911.1: Xcc-8004.911.1 - Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase, at 855,192 to 855,863
Xcc-8004.911.1
Position (kb) 853
854
855 Strain fitness (log2 ratio) -2
-1
0
1 at 853.021 kb on + strand, within Xcc-8004.908.1 at 853.021 kb on + strand, within Xcc-8004.908.1 at 853.022 kb on - strand, within Xcc-8004.908.1 at 853.039 kb on + strand, within Xcc-8004.908.1 at 853.050 kb on + strand, within Xcc-8004.908.1 at 853.051 kb on - strand, within Xcc-8004.908.1 at 853.116 kb on + strand, within Xcc-8004.908.1 at 853.117 kb on - strand, within Xcc-8004.908.1 at 853.117 kb on - strand, within Xcc-8004.908.1 at 853.129 kb on + strand, within Xcc-8004.908.1 at 853.200 kb on + strand, within Xcc-8004.908.1 at 853.200 kb on + strand, within Xcc-8004.908.1 at 853.200 kb on + strand, within Xcc-8004.908.1 at 853.200 kb on + strand, within Xcc-8004.908.1 at 853.201 kb on - strand, within Xcc-8004.908.1 at 853.201 kb on - strand, within Xcc-8004.908.1 at 853.201 kb on - strand, within Xcc-8004.908.1 at 853.201 kb on - strand, within Xcc-8004.908.1 at 853.201 kb on - strand, within Xcc-8004.908.1 at 853.249 kb on - strand, within Xcc-8004.908.1 at 853.249 kb on - strand, within Xcc-8004.908.1 at 853.296 kb on + strand, within Xcc-8004.908.1 at 853.296 kb on + strand, within Xcc-8004.908.1 at 853.297 kb on - strand, within Xcc-8004.908.1 at 853.363 kb on + strand at 853.364 kb on - strand at 853.480 kb on + strand at 853.481 kb on - strand at 853.600 kb on + strand at 853.601 kb on - strand at 853.672 kb on + strand at 853.672 kb on + strand at 853.673 kb on - strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.680 kb on + strand at 853.680 kb on + strand at 853.680 kb on + strand at 853.680 kb on + strand at 853.680 kb on + strand at 853.680 kb on + strand at 853.680 kb on + strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.701 kb on + strand at 853.702 kb on - strand at 853.702 kb on - strand at 853.702 kb on - strand at 853.702 kb on - strand at 853.732 kb on + strand at 853.732 kb on + strand at 853.732 kb on + strand at 853.733 kb on - strand at 853.733 kb on - strand at 853.733 kb on - strand at 853.740 kb on + strand at 853.741 kb on - strand at 853.778 kb on + strand at 853.821 kb on + strand at 854.189 kb on + strand, within Xcc-8004.909.1 at 854.189 kb on + strand, within Xcc-8004.909.1 at 854.189 kb on + strand, within Xcc-8004.909.1 at 854.190 kb on - strand, within Xcc-8004.909.1 at 854.190 kb on - strand, within Xcc-8004.909.1 at 854.190 kb on - strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.308 kb on - strand, within Xcc-8004.909.1 at 854.308 kb on - strand, within Xcc-8004.909.1 at 854.308 kb on - strand, within Xcc-8004.909.1 at 854.437 kb on + strand, within Xcc-8004.909.1 at 854.468 kb on + strand, within Xcc-8004.909.1 at 854.469 kb on - strand, within Xcc-8004.909.1 at 854.507 kb on + strand, within Xcc-8004.909.1 at 854.507 kb on + strand, within Xcc-8004.909.1 at 854.508 kb on - strand, within Xcc-8004.909.1 at 854.508 kb on - strand, within Xcc-8004.909.1 at 854.519 kb on + strand, within Xcc-8004.909.1 at 854.519 kb on + strand, within Xcc-8004.909.1 at 854.519 kb on + strand, within Xcc-8004.909.1 at 854.519 kb on + strand, within Xcc-8004.909.1 at 854.519 kb on + strand, within Xcc-8004.909.1 at 854.519 kb on + strand, within Xcc-8004.909.1 at 854.519 kb on + strand, within Xcc-8004.909.1 at 854.520 kb on - strand, within Xcc-8004.909.1 at 854.520 kb on - strand, within Xcc-8004.909.1 at 854.520 kb on - strand, within Xcc-8004.909.1 at 854.520 kb on - strand, within Xcc-8004.909.1 at 854.520 kb on - strand, within Xcc-8004.909.1 at 854.520 kb on - strand, within Xcc-8004.909.1 at 854.650 kb on + strand, within Xcc-8004.909.1 at 854.650 kb on + strand, within Xcc-8004.909.1 at 854.651 kb on - strand, within Xcc-8004.909.1 at 854.651 kb on - strand, within Xcc-8004.909.1 at 854.675 kb on + strand at 854.675 kb on + strand at 854.676 kb on - strand at 854.771 kb on + strand at 854.771 kb on + strand at 854.771 kb on + strand at 854.771 kb on + strand at 854.771 kb on + strand at 854.771 kb on + strand at 854.771 kb on + strand at 854.771 kb on + strand at 854.772 kb on - strand at 854.772 kb on - strand at 854.772 kb on - strand at 854.772 kb on - strand at 854.772 kb on - strand at 854.772 kb on - strand at 854.772 kb on - strand at 854.772 kb on - strand at 854.772 kb on - strand at 854.795 kb on + strand at 854.795 kb on + strand at 854.795 kb on + strand at 854.795 kb on + strand at 854.795 kb on + strand at 854.796 kb on - strand at 854.796 kb on - strand at 854.796 kb on - strand at 854.796 kb on - strand at 854.833 kb on + strand at 854.834 kb on - strand at 855.175 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MOKA remove 853,021 + Xcc-8004.908.1 0.58 -0.6 853,021 + Xcc-8004.908.1 0.58 +0.8 853,022 - Xcc-8004.908.1 0.58 -0.4 853,039 + Xcc-8004.908.1 0.60 +0.3 853,050 + Xcc-8004.908.1 0.61 +0.2 853,051 - Xcc-8004.908.1 0.61 -0.5 853,116 + Xcc-8004.908.1 0.67 +0.2 853,117 - Xcc-8004.908.1 0.67 +0.1 853,117 - Xcc-8004.908.1 0.67 -0.8 853,129 + Xcc-8004.908.1 0.68 -0.3 853,200 + Xcc-8004.908.1 0.75 +0.9 853,200 + Xcc-8004.908.1 0.75 -0.2 853,200 + Xcc-8004.908.1 0.75 +1.1 853,200 + Xcc-8004.908.1 0.75 +0.6 853,201 - Xcc-8004.908.1 0.75 -0.1 853,201 - Xcc-8004.908.1 0.75 -1.3 853,201 - Xcc-8004.908.1 0.75 -1.2 853,201 - Xcc-8004.908.1 0.75 -1.3 853,201 - Xcc-8004.908.1 0.75 -0.2 853,249 - Xcc-8004.908.1 0.79 +0.3 853,249 - Xcc-8004.908.1 0.79 +0.2 853,296 + Xcc-8004.908.1 0.84 -0.5 853,296 + Xcc-8004.908.1 0.84 -1.2 853,297 - Xcc-8004.908.1 0.84 +0.4 853,363 + -0.0 853,364 - -0.1 853,480 + -0.0 853,481 - -1.2 853,600 + -1.3 853,601 - -0.6 853,672 + -2.7 853,672 + -1.4 853,673 - -0.1 853,675 + -0.8 853,675 + -1.3 853,675 + -1.9 853,675 + +1.2 853,675 + +0.1 853,675 + -0.2 853,675 + -0.4 853,675 + -0.0 853,675 + -0.7 853,675 + +1.0 853,676 - +1.1 853,676 - -0.6 853,676 - +0.6 853,676 - -0.0 853,676 - -0.4 853,676 - +0.2 853,676 - +0.1 853,676 - +0.6 853,680 + -2.3 853,680 + -0.7 853,680 + -0.3 853,680 + +0.5 853,680 + +0.5 853,680 + +0.1 853,680 + +0.6 853,681 - -0.8 853,681 - -0.3 853,681 - +0.7 853,681 - -0.4 853,681 - -0.9 853,681 - -0.5 853,681 - -1.3 853,681 - -0.0 853,681 - -0.4 853,681 - -1.9 853,681 - +1.1 853,681 - +0.0 853,681 - -0.3 853,681 - -0.7 853,681 - -0.7 853,681 - +1.3 853,681 - -0.4 853,681 - +0.7 853,681 - +0.3 853,681 - -0.4 853,681 - -2.1 853,681 - +0.8 853,681 - +0.0 853,681 - +0.7 853,681 - -0.6 853,681 - -0.3 853,681 - +0.8 853,701 + -0.2 853,702 - +0.5 853,702 - +0.6 853,702 - -0.3 853,702 - -0.2 853,732 + +0.1 853,732 + -0.0 853,732 + -0.2 853,733 - -0.1 853,733 - +0.3 853,733 - -0.6 853,740 + -1.0 853,741 - +0.9 853,778 + -1.4 853,821 + -0.1 854,189 + Xcc-8004.909.1 0.41 -1.0 854,189 + Xcc-8004.909.1 0.41 +0.4 854,189 + Xcc-8004.909.1 0.41 +0.9 854,190 - Xcc-8004.909.1 0.41 -2.0 854,190 - Xcc-8004.909.1 0.41 +1.0 854,190 - Xcc-8004.909.1 0.41 +0.6 854,307 + Xcc-8004.909.1 0.53 -0.4 854,307 + Xcc-8004.909.1 0.53 +0.4 854,307 + Xcc-8004.909.1 0.53 -1.0 854,307 + Xcc-8004.909.1 0.53 +0.2 854,307 + Xcc-8004.909.1 0.53 +0.4 854,307 + Xcc-8004.909.1 0.53 -0.1 854,307 + Xcc-8004.909.1 0.53 +0.6 854,307 + Xcc-8004.909.1 0.53 +0.7 854,308 - Xcc-8004.909.1 0.53 +0.1 854,308 - Xcc-8004.909.1 0.53 +0.6 854,308 - Xcc-8004.909.1 0.53 +0.3 854,437 + Xcc-8004.909.1 0.66 +0.4 854,468 + Xcc-8004.909.1 0.69 +0.2 854,469 - Xcc-8004.909.1 0.69 -0.1 854,507 + Xcc-8004.909.1 0.73 -0.5 854,507 + Xcc-8004.909.1 0.73 -0.1 854,508 - Xcc-8004.909.1 0.73 +0.3 854,508 - Xcc-8004.909.1 0.73 +0.9 854,519 + Xcc-8004.909.1 0.74 +1.2 854,519 + Xcc-8004.909.1 0.74 -0.8 854,519 + Xcc-8004.909.1 0.74 +0.3 854,519 + Xcc-8004.909.1 0.74 -1.5 854,519 + Xcc-8004.909.1 0.74 +0.5 854,519 + Xcc-8004.909.1 0.74 -0.5 854,519 + Xcc-8004.909.1 0.74 +0.1 854,520 - Xcc-8004.909.1 0.74 +0.6 854,520 - Xcc-8004.909.1 0.74 +0.6 854,520 - Xcc-8004.909.1 0.74 +0.8 854,520 - Xcc-8004.909.1 0.74 +0.3 854,520 - Xcc-8004.909.1 0.74 +0.8 854,520 - Xcc-8004.909.1 0.74 -0.3 854,650 + Xcc-8004.909.1 0.87 -0.3 854,650 + Xcc-8004.909.1 0.87 +0.6 854,651 - Xcc-8004.909.1 0.88 -0.2 854,651 - Xcc-8004.909.1 0.88 +0.7 854,675 + +0.1 854,675 + +1.1 854,676 - -0.0 854,771 + -1.0 854,771 + +0.2 854,771 + +0.6 854,771 + -1.7 854,771 + -0.2 854,771 + +1.5 854,771 + +0.5 854,771 + +0.4 854,772 - +0.1 854,772 - -0.6 854,772 - +0.5 854,772 - -0.3 854,772 - +1.0 854,772 - -0.7 854,772 - +0.3 854,772 - +0.2 854,772 - +0.1 854,795 + -0.7 854,795 + -0.4 854,795 + -1.0 854,795 + +0.5 854,795 + -0.4 854,796 - -0.2 854,796 - -1.2 854,796 - -0.2 854,796 - +0.3 854,833 + -2.0 854,834 - -0.1 855,175 + -1.5
Or see this region's nucleotide sequence