Experiment: MOKA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.895.1 and Xcc-8004.897.1 overlap by 82 nucleotides Xcc-8004.897.1 and Xcc-8004.898.1 overlap by 168 nucleotides Xcc-8004.898.1 and Xcc-8004.900.1 are separated by 49 nucleotides
Xcc-8004.895.1: Xcc-8004.895.1 - FIG01213692: hypothetical protein, at 840,988 to 843,900
Xcc-8004.895.1
Xcc-8004.897.1: Xcc-8004.897.1 - hypothetical protein, at 843,819 to 844,055
Xcc-8004.897.1
Xcc-8004.898.1: Xcc-8004.898.1 - putative; ORF located using Glimmer/Genemark, at 843,888 to 844,646
Xcc-8004.898.1
Xcc-8004.900.1: Xcc-8004.900.1 - Mobile element protein, at 844,696 to 846,120
Xcc-8004.900.1
Position (kb) 843
844
845 Strain fitness (log2 ratio) -1
0
1
2 at 843.120 kb on + strand, within Xcc-8004.895.1 at 843.120 kb on + strand, within Xcc-8004.895.1 at 843.333 kb on + strand, within Xcc-8004.895.1 at 843.334 kb on - strand, within Xcc-8004.895.1 at 843.374 kb on + strand, within Xcc-8004.895.1 at 843.494 kb on + strand, within Xcc-8004.895.1 at 843.495 kb on - strand, within Xcc-8004.895.1 at 843.551 kb on + strand, within Xcc-8004.895.1 at 843.791 kb on + strand at 843.946 kb on - strand at 844.312 kb on - strand, within Xcc-8004.898.1 at 844.314 kb on - strand, within Xcc-8004.898.1 at 844.314 kb on - strand, within Xcc-8004.898.1 at 844.564 kb on + strand, within Xcc-8004.898.1 at 844.565 kb on - strand, within Xcc-8004.898.1 at 844.635 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MOKA remove 843,120 + Xcc-8004.895.1 0.73 -0.7 843,120 + Xcc-8004.895.1 0.73 -1.7 843,333 + Xcc-8004.895.1 0.81 +1.6 843,334 - Xcc-8004.895.1 0.81 +0.3 843,374 + Xcc-8004.895.1 0.82 +0.1 843,494 + Xcc-8004.895.1 0.86 +0.1 843,495 - Xcc-8004.895.1 0.86 -0.2 843,551 + Xcc-8004.895.1 0.88 -1.5 843,791 + -0.5 843,946 - +1.3 844,312 - Xcc-8004.898.1 0.56 +1.0 844,314 - Xcc-8004.898.1 0.56 -0.9 844,314 - Xcc-8004.898.1 0.56 +0.5 844,564 + Xcc-8004.898.1 0.89 +0.2 844,565 - Xcc-8004.898.1 0.89 +2.6 844,635 - +0.1
Or see this region's nucleotide sequence