Experiment: MOKA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.809.1 and Xcc-8004.810.1 are separated by 10 nucleotides Xcc-8004.810.1 and Xcc-8004.811.1 are separated by 154 nucleotides
Xcc-8004.809.1: Xcc-8004.809.1 - FIG003003: hypothetical protein, at 752,672 to 753,463
Xcc-8004.809.1
Xcc-8004.810.1: Xcc-8004.810.1 - Endonuclease, at 753,474 to 754,301
Xcc-8004.810.1
Xcc-8004.811.1: Xcc-8004.811.1 - FIG01211260: hypothetical protein, at 754,456 to 755,466
Xcc-8004.811.1
Position (kb) 753
754
755 Strain fitness (log2 ratio) -1
0
1 at 752.589 kb on + strand at 752.838 kb on + strand, within Xcc-8004.809.1 at 752.838 kb on + strand, within Xcc-8004.809.1 at 752.838 kb on + strand, within Xcc-8004.809.1 at 752.839 kb on - strand, within Xcc-8004.809.1 at 752.839 kb on - strand, within Xcc-8004.809.1 at 752.841 kb on + strand, within Xcc-8004.809.1 at 752.841 kb on + strand, within Xcc-8004.809.1 at 752.842 kb on - strand, within Xcc-8004.809.1 at 752.842 kb on - strand, within Xcc-8004.809.1 at 752.842 kb on - strand, within Xcc-8004.809.1 at 752.842 kb on - strand, within Xcc-8004.809.1 at 752.842 kb on - strand, within Xcc-8004.809.1 at 752.871 kb on + strand, within Xcc-8004.809.1 at 752.872 kb on - strand, within Xcc-8004.809.1 at 753.264 kb on + strand, within Xcc-8004.809.1 at 753.289 kb on - strand, within Xcc-8004.809.1 at 753.331 kb on - strand, within Xcc-8004.809.1 at 753.408 kb on + strand at 753.409 kb on - strand at 753.409 kb on - strand at 753.409 kb on - strand at 753.409 kb on - strand at 753.473 kb on + strand at 753.473 kb on + strand at 753.474 kb on - strand at 753.474 kb on - strand at 753.474 kb on - strand at 753.540 kb on - strand at 753.834 kb on + strand, within Xcc-8004.810.1 at 753.835 kb on - strand, within Xcc-8004.810.1 at 753.879 kb on + strand, within Xcc-8004.810.1 at 753.880 kb on - strand, within Xcc-8004.810.1 at 753.880 kb on - strand, within Xcc-8004.810.1 at 754.117 kb on - strand, within Xcc-8004.810.1 at 754.117 kb on - strand, within Xcc-8004.810.1 at 754.117 kb on - strand, within Xcc-8004.810.1 at 754.131 kb on + strand, within Xcc-8004.810.1 at 754.132 kb on - strand, within Xcc-8004.810.1 at 754.132 kb on - strand, within Xcc-8004.810.1 at 754.425 kb on + strand at 754.425 kb on + strand at 754.426 kb on - strand at 754.426 kb on - strand at 754.546 kb on + strand at 754.546 kb on + strand at 754.546 kb on + strand at 754.547 kb on - strand at 754.547 kb on - strand at 754.547 kb on - strand at 754.547 kb on - strand at 754.547 kb on - strand at 754.547 kb on - strand at 754.597 kb on + strand, within Xcc-8004.811.1 at 754.597 kb on + strand, within Xcc-8004.811.1 at 754.598 kb on - strand, within Xcc-8004.811.1 at 754.598 kb on - strand, within Xcc-8004.811.1 at 754.598 kb on - strand, within Xcc-8004.811.1 at 754.598 kb on - strand, within Xcc-8004.811.1 at 754.795 kb on + strand, within Xcc-8004.811.1 at 754.796 kb on - strand, within Xcc-8004.811.1 at 755.155 kb on + strand, within Xcc-8004.811.1 at 755.155 kb on + strand, within Xcc-8004.811.1 at 755.155 kb on + strand, within Xcc-8004.811.1 at 755.156 kb on - strand, within Xcc-8004.811.1
Per-strain Table
Position Strand Gene LocusTag Fraction MOKA remove 752,589 + -0.7 752,838 + Xcc-8004.809.1 0.21 +0.1 752,838 + Xcc-8004.809.1 0.21 -0.1 752,838 + Xcc-8004.809.1 0.21 +0.1 752,839 - Xcc-8004.809.1 0.21 -0.2 752,839 - Xcc-8004.809.1 0.21 -0.6 752,841 + Xcc-8004.809.1 0.21 +0.5 752,841 + Xcc-8004.809.1 0.21 +0.5 752,842 - Xcc-8004.809.1 0.21 -0.8 752,842 - Xcc-8004.809.1 0.21 +0.2 752,842 - Xcc-8004.809.1 0.21 -0.6 752,842 - Xcc-8004.809.1 0.21 +0.5 752,842 - Xcc-8004.809.1 0.21 -0.8 752,871 + Xcc-8004.809.1 0.25 +0.5 752,872 - Xcc-8004.809.1 0.25 +0.5 753,264 + Xcc-8004.809.1 0.75 +0.2 753,289 - Xcc-8004.809.1 0.78 +0.8 753,331 - Xcc-8004.809.1 0.83 -0.0 753,408 + +0.3 753,409 - -0.1 753,409 - -0.8 753,409 - +0.2 753,409 - +0.0 753,473 + +0.6 753,473 + +1.0 753,474 - +0.8 753,474 - -0.7 753,474 - -0.2 753,540 - -0.2 753,834 + Xcc-8004.810.1 0.43 +0.4 753,835 - Xcc-8004.810.1 0.44 +0.4 753,879 + Xcc-8004.810.1 0.49 +1.4 753,880 - Xcc-8004.810.1 0.49 -0.0 753,880 - Xcc-8004.810.1 0.49 +1.5 754,117 - Xcc-8004.810.1 0.78 -0.0 754,117 - Xcc-8004.810.1 0.78 -1.4 754,117 - Xcc-8004.810.1 0.78 -0.3 754,131 + Xcc-8004.810.1 0.79 +0.4 754,132 - Xcc-8004.810.1 0.79 +0.4 754,132 - Xcc-8004.810.1 0.79 -0.9 754,425 + -0.1 754,425 + -0.3 754,426 - +0.8 754,426 - -1.4 754,546 + -1.2 754,546 + +0.6 754,546 + +0.1 754,547 - -0.9 754,547 - -0.3 754,547 - -1.2 754,547 - +0.5 754,547 - -0.5 754,547 - +0.9 754,597 + Xcc-8004.811.1 0.14 -1.3 754,597 + Xcc-8004.811.1 0.14 -0.7 754,598 - Xcc-8004.811.1 0.14 -0.7 754,598 - Xcc-8004.811.1 0.14 +0.7 754,598 - Xcc-8004.811.1 0.14 -0.7 754,598 - Xcc-8004.811.1 0.14 +0.0 754,795 + Xcc-8004.811.1 0.34 -0.4 754,796 - Xcc-8004.811.1 0.34 -1.1 755,155 + Xcc-8004.811.1 0.69 -0.9 755,155 + Xcc-8004.811.1 0.69 -0.4 755,155 + Xcc-8004.811.1 0.69 +0.2 755,156 - Xcc-8004.811.1 0.69 -0.1
Or see this region's nucleotide sequence