Experiment: MOKA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.702.1 and Xcc-8004.703.1 are separated by 328 nucleotides Xcc-8004.703.1 and Xcc-8004.704.1 are separated by 186 nucleotides
Xcc-8004.702.1: Xcc-8004.702.1 - Mobile element protein, at 652,419 to 653,252
Xcc-8004.702.1
Xcc-8004.703.1: Xcc-8004.703.1 - hypothetical protein, at 653,581 to 653,892
Xcc-8004.703.1
Xcc-8004.704.1: Xcc-8004.704.1 - 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54), at 654,079 to 655,152
Xcc-8004.704.1
Position (kb) 653
654 Strain fitness (log2 ratio) -1
0
1 at 653.225 kb on - strand at 653.282 kb on + strand at 653.282 kb on + strand at 653.299 kb on + strand at 653.309 kb on - strand at 653.494 kb on + strand at 653.495 kb on - strand at 653.533 kb on - strand at 653.533 kb on - strand at 653.533 kb on - strand at 653.543 kb on - strand at 653.543 kb on - strand at 653.543 kb on - strand at 653.543 kb on - strand at 653.595 kb on + strand at 653.608 kb on - strand at 653.608 kb on - strand at 653.730 kb on + strand, within Xcc-8004.703.1 at 653.876 kb on - strand at 654.105 kb on + strand at 654.105 kb on + strand at 654.293 kb on - strand, within Xcc-8004.704.1 at 654.532 kb on + strand, within Xcc-8004.704.1 at 654.532 kb on + strand, within Xcc-8004.704.1 at 654.532 kb on + strand, within Xcc-8004.704.1 at 654.533 kb on - strand, within Xcc-8004.704.1 at 654.795 kb on + strand, within Xcc-8004.704.1
Per-strain Table
Position Strand Gene LocusTag Fraction MOKA remove 653,225 - +0.1 653,282 + -0.4 653,282 + +0.5 653,299 + -0.2 653,309 - -0.8 653,494 + -0.0 653,495 - +0.2 653,533 - -0.5 653,533 - +0.9 653,533 - -0.0 653,543 - -0.0 653,543 - -0.4 653,543 - +0.2 653,543 - +0.4 653,595 + -0.8 653,608 - +0.8 653,608 - -0.7 653,730 + Xcc-8004.703.1 0.48 -0.8 653,876 - +0.7 654,105 + -0.2 654,105 + -0.0 654,293 - Xcc-8004.704.1 0.20 +0.7 654,532 + Xcc-8004.704.1 0.42 +0.4 654,532 + Xcc-8004.704.1 0.42 -0.2 654,532 + Xcc-8004.704.1 0.42 -0.1 654,533 - Xcc-8004.704.1 0.42 -0.9 654,795 + Xcc-8004.704.1 0.67 -1.3
Or see this region's nucleotide sequence