Experiment: MOKA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.666.1 and Xcc-8004.667.1 overlap by 4 nucleotides Xcc-8004.667.1 and Xcc-8004.668.1 overlap by 4 nucleotides Xcc-8004.668.1 and Xcc-8004.670.1 are separated by 940 nucleotides
Xcc-8004.666.1: Xcc-8004.666.1 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase-related protein, at 609,267 to 609,914
Xcc-8004.666.1
Xcc-8004.667.1: Xcc-8004.667.1 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 609,911 to 610,543
Xcc-8004.667.1
Xcc-8004.668.1: Xcc-8004.668.1 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 610,540 to 611,514
Xcc-8004.668.1
Xcc-8004.670.1: Xcc-8004.670.1 - ice nucleation protein, at 612,455 to 616,537
Xcc-8004.670.1
Position (kb) 610
611
612 Strain fitness (log2 ratio) -2
-1
0
1
2 at 609.672 kb on + strand, within Xcc-8004.666.1 at 609.672 kb on + strand, within Xcc-8004.666.1 at 609.673 kb on - strand, within Xcc-8004.666.1 at 609.673 kb on - strand, within Xcc-8004.666.1 at 610.016 kb on + strand, within Xcc-8004.667.1 at 610.017 kb on - strand, within Xcc-8004.667.1 at 610.019 kb on + strand, within Xcc-8004.667.1 at 610.020 kb on - strand, within Xcc-8004.667.1 at 610.316 kb on + strand, within Xcc-8004.667.1 at 610.317 kb on - strand, within Xcc-8004.667.1 at 610.598 kb on + strand at 610.858 kb on + strand, within Xcc-8004.668.1 at 610.879 kb on + strand, within Xcc-8004.668.1 at 610.879 kb on + strand, within Xcc-8004.668.1 at 610.880 kb on - strand, within Xcc-8004.668.1 at 610.880 kb on - strand, within Xcc-8004.668.1 at 610.933 kb on + strand, within Xcc-8004.668.1 at 610.933 kb on + strand, within Xcc-8004.668.1 at 610.933 kb on + strand, within Xcc-8004.668.1 at 610.933 kb on + strand, within Xcc-8004.668.1 at 610.933 kb on + strand, within Xcc-8004.668.1 at 610.933 kb on + strand, within Xcc-8004.668.1 at 610.934 kb on - strand, within Xcc-8004.668.1 at 610.934 kb on - strand, within Xcc-8004.668.1 at 610.934 kb on - strand, within Xcc-8004.668.1 at 610.954 kb on + strand, within Xcc-8004.668.1 at 611.173 kb on + strand, within Xcc-8004.668.1 at 611.173 kb on + strand, within Xcc-8004.668.1 at 611.173 kb on + strand, within Xcc-8004.668.1 at 611.581 kb on + strand at 611.581 kb on + strand at 611.581 kb on + strand at 611.646 kb on + strand at 611.646 kb on + strand at 611.655 kb on + strand at 612.031 kb on + strand at 612.032 kb on - strand at 612.032 kb on - strand at 612.032 kb on - strand at 612.059 kb on - strand at 612.077 kb on + strand at 612.389 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MOKA remove 609,672 + Xcc-8004.666.1 0.62 -0.7 609,672 + Xcc-8004.666.1 0.62 -0.3 609,673 - Xcc-8004.666.1 0.63 -0.6 609,673 - Xcc-8004.666.1 0.63 -0.1 610,016 + Xcc-8004.667.1 0.17 -0.8 610,017 - Xcc-8004.667.1 0.17 +1.0 610,019 + Xcc-8004.667.1 0.17 -0.4 610,020 - Xcc-8004.667.1 0.17 -1.0 610,316 + Xcc-8004.667.1 0.64 -0.5 610,317 - Xcc-8004.667.1 0.64 -0.3 610,598 + +0.4 610,858 + Xcc-8004.668.1 0.33 -0.3 610,879 + Xcc-8004.668.1 0.35 +1.2 610,879 + Xcc-8004.668.1 0.35 -0.8 610,880 - Xcc-8004.668.1 0.35 +0.3 610,880 - Xcc-8004.668.1 0.35 -0.1 610,933 + Xcc-8004.668.1 0.40 +1.2 610,933 + Xcc-8004.668.1 0.40 -0.5 610,933 + Xcc-8004.668.1 0.40 +0.1 610,933 + Xcc-8004.668.1 0.40 +1.4 610,933 + Xcc-8004.668.1 0.40 -0.6 610,933 + Xcc-8004.668.1 0.40 +1.1 610,934 - Xcc-8004.668.1 0.40 -1.8 610,934 - Xcc-8004.668.1 0.40 +2.4 610,934 - Xcc-8004.668.1 0.40 +0.2 610,954 + Xcc-8004.668.1 0.42 +1.2 611,173 + Xcc-8004.668.1 0.65 +0.9 611,173 + Xcc-8004.668.1 0.65 +0.0 611,173 + Xcc-8004.668.1 0.65 +0.3 611,581 + -1.0 611,581 + -0.4 611,581 + +0.4 611,646 + -0.1 611,646 + +0.3 611,655 + -0.1 612,031 + +0.1 612,032 - +0.1 612,032 - -1.6 612,032 - -0.5 612,059 - -0.3 612,077 + -0.5 612,389 + +1.4
Or see this region's nucleotide sequence