Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.594.1

Experiment: MOKA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.591.1 and Xcc-8004.593.1 are separated by 410 nucleotidesXcc-8004.593.1 and Xcc-8004.594.1 overlap by 96 nucleotidesXcc-8004.594.1 and Xcc-8004.595.1 overlap by 98 nucleotides Xcc-8004.591.1: Xcc-8004.591.1 - FIG01209882: hypothetical protein, at 548,824 to 549,309 Xcc-8004.591.1 Xcc-8004.593.1: Xcc-8004.593.1 - hypothetical protein, at 549,720 to 549,977 Xcc-8004.593.1 Xcc-8004.594.1: Xcc-8004.594.1 - Lytic enzyme, at 549,882 to 550,229 Xcc-8004.594.1 Xcc-8004.595.1: Xcc-8004.595.1 - Lytic enzyme, at 550,132 to 551,613 Xcc-8004.595.1 Position (kb) 549 550 551Strain fitness (log2 ratio) -1 0 1 2at 548.888 kb on + strand, within Xcc-8004.591.1at 548.888 kb on + strand, within Xcc-8004.591.1at 548.888 kb on + strand, within Xcc-8004.591.1at 548.889 kb on - strand, within Xcc-8004.591.1at 549.092 kb on + strand, within Xcc-8004.591.1at 549.092 kb on + strand, within Xcc-8004.591.1at 549.092 kb on + strand, within Xcc-8004.591.1at 549.092 kb on + strand, within Xcc-8004.591.1at 549.092 kb on + strand, within Xcc-8004.591.1at 549.093 kb on - strand, within Xcc-8004.591.1at 549.093 kb on - strand, within Xcc-8004.591.1at 549.093 kb on - strand, within Xcc-8004.591.1at 549.093 kb on - strand, within Xcc-8004.591.1at 549.093 kb on - strand, within Xcc-8004.591.1at 549.093 kb on - strand, within Xcc-8004.591.1at 549.093 kb on - strand, within Xcc-8004.591.1at 549.093 kb on - strand, within Xcc-8004.591.1at 549.093 kb on - strand, within Xcc-8004.591.1at 549.095 kb on + strand, within Xcc-8004.591.1at 549.095 kb on + strand, within Xcc-8004.591.1at 549.095 kb on + strand, within Xcc-8004.591.1at 549.095 kb on + strand, within Xcc-8004.591.1at 549.095 kb on + strand, within Xcc-8004.591.1at 549.095 kb on + strand, within Xcc-8004.591.1at 549.096 kb on - strand, within Xcc-8004.591.1at 549.096 kb on - strand, within Xcc-8004.591.1at 549.096 kb on - strand, within Xcc-8004.591.1at 549.096 kb on - strand, within Xcc-8004.591.1at 549.096 kb on - strand, within Xcc-8004.591.1at 549.096 kb on - strand, within Xcc-8004.591.1at 549.096 kb on - strand, within Xcc-8004.591.1at 549.257 kb on + strand, within Xcc-8004.591.1at 549.269 kb on + strandat 549.562 kb on - strandat 549.562 kb on - strandat 549.635 kb on + strandat 549.635 kb on + strandat 549.635 kb on + strandat 549.635 kb on + strandat 549.635 kb on + strandat 549.635 kb on + strandat 549.636 kb on - strandat 549.684 kb on + strandat 549.685 kb on - strandat 549.704 kb on + strandat 549.704 kb on + strandat 549.775 kb on + strand, within Xcc-8004.593.1at 549.775 kb on + strand, within Xcc-8004.593.1at 549.776 kb on - strand, within Xcc-8004.593.1at 549.776 kb on - strand, within Xcc-8004.593.1at 549.776 kb on - strand, within Xcc-8004.593.1at 549.776 kb on - strand, within Xcc-8004.593.1at 549.776 kb on - strand, within Xcc-8004.593.1at 549.820 kb on + strand, within Xcc-8004.593.1at 549.821 kb on - strand, within Xcc-8004.593.1at 549.831 kb on + strand, within Xcc-8004.593.1at 549.831 kb on + strand, within Xcc-8004.593.1at 549.993 kb on + strand, within Xcc-8004.594.1at 549.993 kb on + strand, within Xcc-8004.594.1at 549.994 kb on - strand, within Xcc-8004.594.1at 549.994 kb on - strand, within Xcc-8004.594.1at 550.073 kb on + strand, within Xcc-8004.594.1at 550.073 kb on + strand, within Xcc-8004.594.1at 550.073 kb on + strand, within Xcc-8004.594.1at 550.133 kb on + strandat 550.133 kb on + strandat 550.290 kb on + strand, within Xcc-8004.595.1at 550.291 kb on - strand, within Xcc-8004.595.1at 550.291 kb on - strand, within Xcc-8004.595.1at 550.595 kb on + strand, within Xcc-8004.595.1at 550.595 kb on + strand, within Xcc-8004.595.1at 550.614 kb on - strand, within Xcc-8004.595.1at 550.650 kb on + strand, within Xcc-8004.595.1at 550.729 kb on - strand, within Xcc-8004.595.1at 550.729 kb on - strand, within Xcc-8004.595.1at 550.760 kb on + strand, within Xcc-8004.595.1at 550.760 kb on + strand, within Xcc-8004.595.1at 550.761 kb on - strand, within Xcc-8004.595.1at 550.761 kb on - strand, within Xcc-8004.595.1at 550.825 kb on - strand, within Xcc-8004.595.1at 550.847 kb on + strand, within Xcc-8004.595.1at 550.848 kb on - strand, within Xcc-8004.595.1at 550.848 kb on - strand, within Xcc-8004.595.1at 550.860 kb on + strand, within Xcc-8004.595.1at 550.898 kb on + strand, within Xcc-8004.595.1at 550.899 kb on - strand, within Xcc-8004.595.1at 550.899 kb on - strand, within Xcc-8004.595.1at 550.986 kb on + strand, within Xcc-8004.595.1at 550.987 kb on - strand, within Xcc-8004.595.1at 551.023 kb on + strand, within Xcc-8004.595.1at 551.023 kb on + strand, within Xcc-8004.595.1at 551.023 kb on + strand, within Xcc-8004.595.1at 551.023 kb on + strand, within Xcc-8004.595.1at 551.024 kb on - strand, within Xcc-8004.595.1at 551.024 kb on - strand, within Xcc-8004.595.1at 551.024 kb on - strand, within Xcc-8004.595.1at 551.024 kb on - strand, within Xcc-8004.595.1at 551.028 kb on + strand, within Xcc-8004.595.1at 551.028 kb on + strand, within Xcc-8004.595.1at 551.029 kb on - strand, within Xcc-8004.595.1at 551.029 kb on - strand, within Xcc-8004.595.1at 551.029 kb on - strand, within Xcc-8004.595.1at 551.029 kb on - strand, within Xcc-8004.595.1at 551.072 kb on + strand, within Xcc-8004.595.1at 551.072 kb on + strand, within Xcc-8004.595.1at 551.072 kb on + strand, within Xcc-8004.595.1at 551.072 kb on + strand, within Xcc-8004.595.1at 551.072 kb on + strand, within Xcc-8004.595.1at 551.072 kb on + strand, within Xcc-8004.595.1at 551.073 kb on - strand, within Xcc-8004.595.1at 551.073 kb on - strand, within Xcc-8004.595.1at 551.073 kb on - strand, within Xcc-8004.595.1at 551.073 kb on - strand, within Xcc-8004.595.1at 551.073 kb on - strand, within Xcc-8004.595.1at 551.073 kb on - strand, within Xcc-8004.595.1at 551.073 kb on - strand, within Xcc-8004.595.1at 551.073 kb on - strand, within Xcc-8004.595.1at 551.123 kb on + strand, within Xcc-8004.595.1at 551.123 kb on + strand, within Xcc-8004.595.1at 551.124 kb on - strand, within Xcc-8004.595.1at 551.124 kb on - strand, within Xcc-8004.595.1at 551.124 kb on - strand, within Xcc-8004.595.1at 551.133 kb on + strand, within Xcc-8004.595.1at 551.133 kb on + strand, within Xcc-8004.595.1at 551.133 kb on + strand, within Xcc-8004.595.1at 551.150 kb on + strand, within Xcc-8004.595.1at 551.150 kb on + strand, within Xcc-8004.595.1at 551.150 kb on + strand, within Xcc-8004.595.1at 551.151 kb on - strand, within Xcc-8004.595.1at 551.151 kb on - strand, within Xcc-8004.595.1at 551.156 kb on + strand, within Xcc-8004.595.1at 551.156 kb on + strand, within Xcc-8004.595.1at 551.156 kb on + strand, within Xcc-8004.595.1at 551.156 kb on + strand, within Xcc-8004.595.1at 551.156 kb on + strand, within Xcc-8004.595.1at 551.156 kb on + strand, within Xcc-8004.595.1at 551.157 kb on - strand, within Xcc-8004.595.1at 551.157 kb on - strand, within Xcc-8004.595.1at 551.157 kb on - strand, within Xcc-8004.595.1at 551.157 kb on - strand, within Xcc-8004.595.1at 551.162 kb on + strand, within Xcc-8004.595.1at 551.163 kb on - strand, within Xcc-8004.595.1at 551.163 kb on - strand, within Xcc-8004.595.1

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Per-strain Table

Position Strand Gene LocusTag Fraction MOKA
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548,888 + Xcc-8004.591.1 0.13 -0.5
548,888 + Xcc-8004.591.1 0.13 -0.6
548,888 + Xcc-8004.591.1 0.13 -0.8
548,889 - Xcc-8004.591.1 0.13 -0.5
549,092 + Xcc-8004.591.1 0.55 -0.1
549,092 + Xcc-8004.591.1 0.55 -0.2
549,092 + Xcc-8004.591.1 0.55 -0.7
549,092 + Xcc-8004.591.1 0.55 +0.0
549,092 + Xcc-8004.591.1 0.55 +1.0
549,093 - Xcc-8004.591.1 0.55 +0.2
549,093 - Xcc-8004.591.1 0.55 -0.1
549,093 - Xcc-8004.591.1 0.55 +0.8
549,093 - Xcc-8004.591.1 0.55 -0.9
549,093 - Xcc-8004.591.1 0.55 -0.5
549,093 - Xcc-8004.591.1 0.55 +0.2
549,093 - Xcc-8004.591.1 0.55 -0.0
549,093 - Xcc-8004.591.1 0.55 +0.9
549,093 - Xcc-8004.591.1 0.55 -0.4
549,095 + Xcc-8004.591.1 0.56 -0.2
549,095 + Xcc-8004.591.1 0.56 -0.2
549,095 + Xcc-8004.591.1 0.56 -1.4
549,095 + Xcc-8004.591.1 0.56 -0.2
549,095 + Xcc-8004.591.1 0.56 -0.2
549,095 + Xcc-8004.591.1 0.56 +0.1
549,096 - Xcc-8004.591.1 0.56 +1.6
549,096 - Xcc-8004.591.1 0.56 -0.1
549,096 - Xcc-8004.591.1 0.56 -0.6
549,096 - Xcc-8004.591.1 0.56 -1.3
549,096 - Xcc-8004.591.1 0.56 -0.7
549,096 - Xcc-8004.591.1 0.56 -0.1
549,096 - Xcc-8004.591.1 0.56 +0.2
549,257 + Xcc-8004.591.1 0.89 -0.3
549,269 + -0.2
549,562 - -0.1
549,562 - -0.3
549,635 + -0.5
549,635 + -0.5
549,635 + +0.4
549,635 + +0.0
549,635 + -0.1
549,635 + -0.4
549,636 - +0.1
549,684 + -0.6
549,685 - -0.3
549,704 + -0.2
549,704 + -1.3
549,775 + Xcc-8004.593.1 0.21 -0.6
549,775 + Xcc-8004.593.1 0.21 +0.0
549,776 - Xcc-8004.593.1 0.22 +0.6
549,776 - Xcc-8004.593.1 0.22 +1.6
549,776 - Xcc-8004.593.1 0.22 -0.0
549,776 - Xcc-8004.593.1 0.22 +0.3
549,776 - Xcc-8004.593.1 0.22 -0.4
549,820 + Xcc-8004.593.1 0.39 -0.0
549,821 - Xcc-8004.593.1 0.39 -1.1
549,831 + Xcc-8004.593.1 0.43 +0.0
549,831 + Xcc-8004.593.1 0.43 +0.1
549,993 + Xcc-8004.594.1 0.32 +0.2
549,993 + Xcc-8004.594.1 0.32 +0.1
549,994 - Xcc-8004.594.1 0.32 -0.3
549,994 - Xcc-8004.594.1 0.32 +0.5
550,073 + Xcc-8004.594.1 0.55 +1.6
550,073 + Xcc-8004.594.1 0.55 -0.1
550,073 + Xcc-8004.594.1 0.55 +0.6
550,133 + -1.5
550,133 + +0.4
550,290 + Xcc-8004.595.1 0.11 -0.8
550,291 - Xcc-8004.595.1 0.11 -0.0
550,291 - Xcc-8004.595.1 0.11 +0.1
550,595 + Xcc-8004.595.1 0.31 -0.5
550,595 + Xcc-8004.595.1 0.31 -0.4
550,614 - Xcc-8004.595.1 0.33 +0.1
550,650 + Xcc-8004.595.1 0.35 +0.2
550,729 - Xcc-8004.595.1 0.40 -0.7
550,729 - Xcc-8004.595.1 0.40 +0.3
550,760 + Xcc-8004.595.1 0.42 -0.3
550,760 + Xcc-8004.595.1 0.42 +0.2
550,761 - Xcc-8004.595.1 0.42 -0.0
550,761 - Xcc-8004.595.1 0.42 -0.3
550,825 - Xcc-8004.595.1 0.47 -0.2
550,847 + Xcc-8004.595.1 0.48 -0.3
550,848 - Xcc-8004.595.1 0.48 -1.2
550,848 - Xcc-8004.595.1 0.48 -0.5
550,860 + Xcc-8004.595.1 0.49 +0.3
550,898 + Xcc-8004.595.1 0.52 +0.2
550,899 - Xcc-8004.595.1 0.52 -0.2
550,899 - Xcc-8004.595.1 0.52 +0.6
550,986 + Xcc-8004.595.1 0.58 -0.0
550,987 - Xcc-8004.595.1 0.58 +0.3
551,023 + Xcc-8004.595.1 0.60 -0.7
551,023 + Xcc-8004.595.1 0.60 +0.6
551,023 + Xcc-8004.595.1 0.60 -0.6
551,023 + Xcc-8004.595.1 0.60 +0.3
551,024 - Xcc-8004.595.1 0.60 +0.0
551,024 - Xcc-8004.595.1 0.60 -0.6
551,024 - Xcc-8004.595.1 0.60 +0.3
551,024 - Xcc-8004.595.1 0.60 -0.1
551,028 + Xcc-8004.595.1 0.60 -0.3
551,028 + Xcc-8004.595.1 0.60 +2.6
551,029 - Xcc-8004.595.1 0.61 +0.5
551,029 - Xcc-8004.595.1 0.61 -1.1
551,029 - Xcc-8004.595.1 0.61 -0.4
551,029 - Xcc-8004.595.1 0.61 +0.0
551,072 + Xcc-8004.595.1 0.63 -1.5
551,072 + Xcc-8004.595.1 0.63 +0.1
551,072 + Xcc-8004.595.1 0.63 -0.9
551,072 + Xcc-8004.595.1 0.63 -0.2
551,072 + Xcc-8004.595.1 0.63 +0.8
551,072 + Xcc-8004.595.1 0.63 +0.5
551,073 - Xcc-8004.595.1 0.63 +0.2
551,073 - Xcc-8004.595.1 0.63 +0.3
551,073 - Xcc-8004.595.1 0.63 +1.0
551,073 - Xcc-8004.595.1 0.63 -0.5
551,073 - Xcc-8004.595.1 0.63 +0.3
551,073 - Xcc-8004.595.1 0.63 -0.8
551,073 - Xcc-8004.595.1 0.63 +0.2
551,073 - Xcc-8004.595.1 0.63 -0.5
551,123 + Xcc-8004.595.1 0.67 -1.0
551,123 + Xcc-8004.595.1 0.67 +0.9
551,124 - Xcc-8004.595.1 0.67 -0.3
551,124 - Xcc-8004.595.1 0.67 -0.2
551,124 - Xcc-8004.595.1 0.67 +0.0
551,133 + Xcc-8004.595.1 0.68 +0.0
551,133 + Xcc-8004.595.1 0.68 +1.0
551,133 + Xcc-8004.595.1 0.68 +0.5
551,150 + Xcc-8004.595.1 0.69 -0.8
551,150 + Xcc-8004.595.1 0.69 -0.4
551,150 + Xcc-8004.595.1 0.69 +0.6
551,151 - Xcc-8004.595.1 0.69 -0.7
551,151 - Xcc-8004.595.1 0.69 -0.5
551,156 + Xcc-8004.595.1 0.69 +0.0
551,156 + Xcc-8004.595.1 0.69 +0.0
551,156 + Xcc-8004.595.1 0.69 -0.4
551,156 + Xcc-8004.595.1 0.69 -0.3
551,156 + Xcc-8004.595.1 0.69 +0.2
551,156 + Xcc-8004.595.1 0.69 +0.7
551,157 - Xcc-8004.595.1 0.69 -0.4
551,157 - Xcc-8004.595.1 0.69 -0.5
551,157 - Xcc-8004.595.1 0.69 -0.1
551,157 - Xcc-8004.595.1 0.69 +0.6
551,162 + Xcc-8004.595.1 0.70 +0.9
551,163 - Xcc-8004.595.1 0.70 -0.9
551,163 - Xcc-8004.595.1 0.70 -1.1

Or see this region's nucleotide sequence