Experiment: MOKA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.587.1 and Xcc-8004.588.1 overlap by 4 nucleotides Xcc-8004.588.1 and Xcc-8004.589.1 overlap by 1 nucleotides Xcc-8004.589.1 and Xcc-8004.590.1 are separated by 47 nucleotides
Xcc-8004.587.1: Xcc-8004.587.1 - Na(+) H(+) antiporter subunit D, at 542,951 to 544,510
Xcc-8004.587.1
Xcc-8004.588.1: Xcc-8004.588.1 - Na(+) H(+) antiporter subunit C, at 544,507 to 544,881
Xcc-8004.588.1
Xcc-8004.589.1: Xcc-8004.589.1 - hypothetical protein, at 544,881 to 547,709
Xcc-8004.589.1
Xcc-8004.590.1: Xcc-8004.590.1 - FIG01210288: hypothetical protein, at 547,757 to 548,776
Xcc-8004.590.1
Position (kb) 544
545
546
547
548 Strain fitness (log2 ratio) -2
-1
0
1
2 at 545.177 kb on - strand, within Xcc-8004.589.1 at 545.693 kb on - strand, within Xcc-8004.589.1 at 545.693 kb on - strand, within Xcc-8004.589.1 at 545.693 kb on - strand, within Xcc-8004.589.1 at 545.693 kb on - strand, within Xcc-8004.589.1 at 547.747 kb on + strand at 547.762 kb on + strand at 547.763 kb on - strand at 547.840 kb on + strand at 547.840 kb on + strand at 547.841 kb on - strand at 547.841 kb on - strand at 547.868 kb on + strand, within Xcc-8004.590.1 at 547.869 kb on - strand, within Xcc-8004.590.1 at 548.324 kb on + strand, within Xcc-8004.590.1 at 548.324 kb on + strand, within Xcc-8004.590.1 at 548.324 kb on + strand, within Xcc-8004.590.1 at 548.325 kb on - strand, within Xcc-8004.590.1 at 548.495 kb on + strand, within Xcc-8004.590.1 at 548.496 kb on - strand, within Xcc-8004.590.1 at 548.525 kb on + strand, within Xcc-8004.590.1 at 548.525 kb on + strand, within Xcc-8004.590.1 at 548.526 kb on - strand, within Xcc-8004.590.1 at 548.579 kb on + strand, within Xcc-8004.590.1
Per-strain Table
Position Strand Gene LocusTag Fraction MOKA remove 545,177 - Xcc-8004.589.1 0.10 -1.7 545,693 - Xcc-8004.589.1 0.29 -0.3 545,693 - Xcc-8004.589.1 0.29 +0.5 545,693 - Xcc-8004.589.1 0.29 -1.9 545,693 - Xcc-8004.589.1 0.29 +0.9 547,747 + +1.1 547,762 + -0.3 547,763 - +0.5 547,840 + +2.0 547,840 + +0.8 547,841 - -1.2 547,841 - -1.0 547,868 + Xcc-8004.590.1 0.11 +0.5 547,869 - Xcc-8004.590.1 0.11 +0.1 548,324 + Xcc-8004.590.1 0.56 +0.4 548,324 + Xcc-8004.590.1 0.56 -0.7 548,324 + Xcc-8004.590.1 0.56 +1.2 548,325 - Xcc-8004.590.1 0.56 +1.3 548,495 + Xcc-8004.590.1 0.72 -0.4 548,496 - Xcc-8004.590.1 0.72 -0.2 548,525 + Xcc-8004.590.1 0.75 -0.6 548,525 + Xcc-8004.590.1 0.75 -1.6 548,526 - Xcc-8004.590.1 0.75 +0.6 548,579 + Xcc-8004.590.1 0.81 -1.1
Or see this region's nucleotide sequence