Experiment: MOKA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5332.1 and Xcc-8004.5333.1 overlap by 4 nucleotides Xcc-8004.5333.1 and Xcc-8004.5334.1 are separated by 161 nucleotides Xcc-8004.5334.1 and Xcc-8004.5335.1 are separated by 22 nucleotides Xcc-8004.5335.1 and Xcc-8004.5336.1 are separated by 87 nucleotides Xcc-8004.5336.1 and Xcc-8004.5337.1 are separated by 24 nucleotides
Xcc-8004.5332.1: Xcc-8004.5332.1 - Mobile element protein, at 5,068,587 to 5,068,715
Xcc-8004.5332.1
Xcc-8004.5333.1: Xcc-8004.5333.1 - Transposase (class I), at 5,068,712 to 5,068,936
Xcc-8004.5333.1
Xcc-8004.5334.1: Xcc-8004.5334.1 - hypothetical protein, at 5,069,098 to 5,069,310
Xcc-8004.5334.1
Xcc-8004.5335.1: Xcc-8004.5335.1 - FIG01214241: hypothetical protein, at 5,069,333 to 5,069,662
Xcc-8004.5335.1
Xcc-8004.5336.1: Xcc-8004.5336.1 - HigA protein (antitoxin to HigB), at 5,069,750 to 5,070,019
Xcc-8004.5336.1
Xcc-8004.5337.1: Xcc-8004.5337.1 - Similar to ribosomal large subunit pseudouridine synthase A, at 5,070,044 to 5,071,009
Xcc-8004.5337.1
Position (kb) 5069
5070 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 5068.339 kb on + strand at 5068.339 kb on + strand at 5068.339 kb on + strand at 5068.339 kb on + strand at 5068.358 kb on + strand at 5068.358 kb on + strand at 5068.358 kb on + strand at 5068.358 kb on + strand at 5068.358 kb on + strand at 5068.359 kb on - strand at 5068.359 kb on - strand at 5068.359 kb on - strand at 5068.359 kb on - strand at 5068.449 kb on - strand at 5068.478 kb on - strand at 5068.487 kb on + strand at 5068.487 kb on + strand at 5068.488 kb on - strand at 5068.488 kb on - strand at 5068.488 kb on - strand at 5068.488 kb on - strand at 5068.524 kb on + strand at 5068.525 kb on - strand at 5068.525 kb on - strand at 5068.662 kb on + strand, within Xcc-8004.5332.1 at 5068.805 kb on + strand, within Xcc-8004.5333.1 at 5068.805 kb on + strand, within Xcc-8004.5333.1 at 5068.805 kb on + strand, within Xcc-8004.5333.1 at 5068.806 kb on - strand, within Xcc-8004.5333.1 at 5068.811 kb on + strand, within Xcc-8004.5333.1 at 5068.811 kb on + strand, within Xcc-8004.5333.1 at 5068.811 kb on + strand, within Xcc-8004.5333.1 at 5068.812 kb on - strand, within Xcc-8004.5333.1 at 5068.914 kb on + strand at 5068.914 kb on + strand at 5068.915 kb on - strand at 5068.915 kb on - strand at 5068.915 kb on - strand at 5068.916 kb on - strand at 5068.934 kb on + strand at 5068.934 kb on + strand at 5068.935 kb on - strand at 5068.935 kb on - strand at 5068.935 kb on - strand at 5069.044 kb on + strand at 5069.044 kb on + strand at 5069.045 kb on - strand at 5069.045 kb on - strand at 5069.075 kb on + strand at 5069.099 kb on + strand at 5069.108 kb on + strand at 5069.108 kb on + strand at 5069.108 kb on + strand at 5069.109 kb on - strand at 5069.114 kb on + strand at 5069.114 kb on + strand at 5069.114 kb on + strand at 5069.114 kb on + strand at 5069.114 kb on + strand at 5069.114 kb on + strand at 5069.114 kb on + strand at 5069.115 kb on - strand at 5069.115 kb on - strand at 5069.197 kb on + strand, within Xcc-8004.5334.1 at 5069.259 kb on + strand, within Xcc-8004.5334.1 at 5069.274 kb on + strand, within Xcc-8004.5334.1 at 5069.275 kb on - strand, within Xcc-8004.5334.1 at 5069.275 kb on - strand, within Xcc-8004.5334.1 at 5069.310 kb on + strand at 5069.310 kb on + strand at 5069.310 kb on + strand at 5069.310 kb on + strand at 5069.310 kb on + strand at 5069.311 kb on - strand at 5069.311 kb on - strand at 5069.311 kb on - strand at 5069.311 kb on - strand at 5069.311 kb on - strand at 5069.334 kb on + strand at 5069.334 kb on + strand at 5069.335 kb on - strand at 5069.539 kb on + strand, within Xcc-8004.5335.1 at 5069.741 kb on - strand at 5069.741 kb on - strand at 5069.742 kb on + strand at 5069.742 kb on + strand at 5069.742 kb on + strand at 5069.743 kb on - strand at 5069.743 kb on - strand at 5069.748 kb on + strand at 5069.748 kb on + strand at 5069.748 kb on + strand at 5069.749 kb on - strand at 5069.749 kb on - strand at 5069.758 kb on + strand at 5069.759 kb on - strand at 5069.794 kb on + strand, within Xcc-8004.5336.1 at 5069.804 kb on + strand, within Xcc-8004.5336.1 at 5069.805 kb on - strand, within Xcc-8004.5336.1 at 5069.805 kb on - strand, within Xcc-8004.5336.1 at 5069.897 kb on + strand, within Xcc-8004.5336.1 at 5069.897 kb on + strand, within Xcc-8004.5336.1 at 5069.897 kb on + strand, within Xcc-8004.5336.1 at 5069.898 kb on - strand, within Xcc-8004.5336.1 at 5069.898 kb on - strand, within Xcc-8004.5336.1 at 5069.901 kb on + strand, within Xcc-8004.5336.1 at 5069.901 kb on + strand, within Xcc-8004.5336.1 at 5069.901 kb on + strand, within Xcc-8004.5336.1 at 5069.901 kb on + strand, within Xcc-8004.5336.1 at 5069.901 kb on + strand, within Xcc-8004.5336.1 at 5069.901 kb on + strand, within Xcc-8004.5336.1 at 5069.901 kb on + strand, within Xcc-8004.5336.1 at 5069.901 kb on + strand, within Xcc-8004.5336.1 at 5069.901 kb on + strand, within Xcc-8004.5336.1 at 5069.901 kb on + strand, within Xcc-8004.5336.1 at 5069.901 kb on + strand, within Xcc-8004.5336.1 at 5069.901 kb on + strand, within Xcc-8004.5336.1 at 5069.902 kb on - strand, within Xcc-8004.5336.1 at 5069.902 kb on - strand, within Xcc-8004.5336.1 at 5069.902 kb on - strand, within Xcc-8004.5336.1 at 5069.902 kb on - strand, within Xcc-8004.5336.1 at 5070.013 kb on - strand at 5070.013 kb on - strand at 5070.017 kb on + strand at 5070.017 kb on + strand at 5070.027 kb on + strand at 5070.027 kb on + strand at 5070.027 kb on + strand at 5070.028 kb on - strand at 5070.037 kb on + strand at 5070.038 kb on - strand at 5070.224 kb on - strand, within Xcc-8004.5337.1 at 5070.224 kb on - strand, within Xcc-8004.5337.1 at 5070.271 kb on - strand, within Xcc-8004.5337.1 at 5070.390 kb on + strand, within Xcc-8004.5337.1 at 5070.390 kb on + strand, within Xcc-8004.5337.1 at 5070.432 kb on + strand, within Xcc-8004.5337.1 at 5070.432 kb on + strand, within Xcc-8004.5337.1 at 5070.433 kb on - strand, within Xcc-8004.5337.1 at 5070.472 kb on - strand, within Xcc-8004.5337.1 at 5070.472 kb on - strand, within Xcc-8004.5337.1 at 5070.472 kb on - strand, within Xcc-8004.5337.1 at 5070.472 kb on - strand, within Xcc-8004.5337.1 at 5070.599 kb on + strand, within Xcc-8004.5337.1 at 5070.599 kb on + strand, within Xcc-8004.5337.1 at 5070.600 kb on - strand, within Xcc-8004.5337.1 at 5070.603 kb on + strand, within Xcc-8004.5337.1 at 5070.603 kb on + strand, within Xcc-8004.5337.1 at 5070.603 kb on + strand, within Xcc-8004.5337.1 at 5070.603 kb on + strand, within Xcc-8004.5337.1 at 5070.603 kb on + strand, within Xcc-8004.5337.1 at 5070.604 kb on - strand, within Xcc-8004.5337.1 at 5070.604 kb on - strand, within Xcc-8004.5337.1 at 5070.604 kb on - strand, within Xcc-8004.5337.1 at 5070.604 kb on - strand, within Xcc-8004.5337.1 at 5070.604 kb on - strand, within Xcc-8004.5337.1 at 5070.604 kb on - strand, within Xcc-8004.5337.1 at 5070.604 kb on - strand, within Xcc-8004.5337.1 at 5070.604 kb on - strand, within Xcc-8004.5337.1 at 5070.604 kb on - strand, within Xcc-8004.5337.1 at 5070.604 kb on - strand, within Xcc-8004.5337.1 at 5070.604 kb on - strand, within Xcc-8004.5337.1
Per-strain Table
Position Strand Gene LocusTag Fraction MOKA remove 5,068,339 + -0.9 5,068,339 + -1.6 5,068,339 + -0.2 5,068,339 + -0.6 5,068,358 + -0.5 5,068,358 + +1.8 5,068,358 + -0.7 5,068,358 + +0.8 5,068,358 + +0.6 5,068,359 - -1.2 5,068,359 - -0.7 5,068,359 - +0.5 5,068,359 - +0.3 5,068,449 - +0.1 5,068,478 - -0.0 5,068,487 + -0.6 5,068,487 + +0.0 5,068,488 - -0.2 5,068,488 - +0.8 5,068,488 - -0.1 5,068,488 - +0.1 5,068,524 + +0.3 5,068,525 - +0.3 5,068,525 - +0.3 5,068,662 + Xcc-8004.5332.1 0.58 -0.5 5,068,805 + Xcc-8004.5333.1 0.41 +0.2 5,068,805 + Xcc-8004.5333.1 0.41 +1.7 5,068,805 + Xcc-8004.5333.1 0.41 -0.4 5,068,806 - Xcc-8004.5333.1 0.42 -0.5 5,068,811 + Xcc-8004.5333.1 0.44 +0.2 5,068,811 + Xcc-8004.5333.1 0.44 -0.1 5,068,811 + Xcc-8004.5333.1 0.44 -0.0 5,068,812 - Xcc-8004.5333.1 0.44 -1.2 5,068,914 + -1.0 5,068,914 + +0.0 5,068,915 - -1.0 5,068,915 - +0.7 5,068,915 - -1.2 5,068,916 - -0.9 5,068,934 + +0.1 5,068,934 + +0.1 5,068,935 - -0.6 5,068,935 - +0.2 5,068,935 - -0.1 5,069,044 + -0.6 5,069,044 + +0.7 5,069,045 - -1.6 5,069,045 - -0.2 5,069,075 + +0.5 5,069,099 + +0.7 5,069,108 + -0.3 5,069,108 + -1.3 5,069,108 + +0.3 5,069,109 - +0.5 5,069,114 + +0.9 5,069,114 + -0.3 5,069,114 + -0.3 5,069,114 + +0.1 5,069,114 + +0.2 5,069,114 + +1.1 5,069,114 + +0.9 5,069,115 - -0.4 5,069,115 - -0.3 5,069,197 + Xcc-8004.5334.1 0.46 +0.0 5,069,259 + Xcc-8004.5334.1 0.76 -1.0 5,069,274 + Xcc-8004.5334.1 0.83 +0.5 5,069,275 - Xcc-8004.5334.1 0.83 -0.5 5,069,275 - Xcc-8004.5334.1 0.83 -0.2 5,069,310 + -0.1 5,069,310 + -0.3 5,069,310 + +0.3 5,069,310 + +0.9 5,069,310 + +0.2 5,069,311 - -0.6 5,069,311 - +1.0 5,069,311 - -0.5 5,069,311 - -0.4 5,069,311 - +0.9 5,069,334 + +0.8 5,069,334 + -0.3 5,069,335 - +0.2 5,069,539 + Xcc-8004.5335.1 0.62 +0.4 5,069,741 - +1.1 5,069,741 - -0.4 5,069,742 + +0.3 5,069,742 + -0.2 5,069,742 + -0.1 5,069,743 - +1.0 5,069,743 - -1.0 5,069,748 + +4.8 5,069,748 + -0.3 5,069,748 + +0.1 5,069,749 - -0.1 5,069,749 - +0.7 5,069,758 + +0.2 5,069,759 - +0.3 5,069,794 + Xcc-8004.5336.1 0.16 +0.9 5,069,804 + Xcc-8004.5336.1 0.20 +0.2 5,069,805 - Xcc-8004.5336.1 0.20 -0.1 5,069,805 - Xcc-8004.5336.1 0.20 -0.4 5,069,897 + Xcc-8004.5336.1 0.54 +0.1 5,069,897 + Xcc-8004.5336.1 0.54 -0.4 5,069,897 + Xcc-8004.5336.1 0.54 -0.6 5,069,898 - Xcc-8004.5336.1 0.55 -1.3 5,069,898 - Xcc-8004.5336.1 0.55 -0.3 5,069,901 + Xcc-8004.5336.1 0.56 +0.6 5,069,901 + Xcc-8004.5336.1 0.56 +0.5 5,069,901 + Xcc-8004.5336.1 0.56 +0.4 5,069,901 + Xcc-8004.5336.1 0.56 -0.2 5,069,901 + Xcc-8004.5336.1 0.56 +0.5 5,069,901 + Xcc-8004.5336.1 0.56 -0.2 5,069,901 + Xcc-8004.5336.1 0.56 -2.3 5,069,901 + Xcc-8004.5336.1 0.56 -0.1 5,069,901 + Xcc-8004.5336.1 0.56 -1.8 5,069,901 + Xcc-8004.5336.1 0.56 -1.2 5,069,901 + Xcc-8004.5336.1 0.56 +1.2 5,069,901 + Xcc-8004.5336.1 0.56 +0.3 5,069,902 - Xcc-8004.5336.1 0.56 -0.7 5,069,902 - Xcc-8004.5336.1 0.56 +0.2 5,069,902 - Xcc-8004.5336.1 0.56 +0.8 5,069,902 - Xcc-8004.5336.1 0.56 -1.3 5,070,013 - +0.9 5,070,013 - -0.2 5,070,017 + -2.1 5,070,017 + -0.9 5,070,027 + -0.0 5,070,027 + +0.4 5,070,027 + +0.5 5,070,028 - -0.5 5,070,037 + -0.3 5,070,038 - +0.4 5,070,224 - Xcc-8004.5337.1 0.19 -2.4 5,070,224 - Xcc-8004.5337.1 0.19 +0.4 5,070,271 - Xcc-8004.5337.1 0.23 +0.4 5,070,390 + Xcc-8004.5337.1 0.36 +0.4 5,070,390 + Xcc-8004.5337.1 0.36 -0.7 5,070,432 + Xcc-8004.5337.1 0.40 +1.7 5,070,432 + Xcc-8004.5337.1 0.40 -0.4 5,070,433 - Xcc-8004.5337.1 0.40 +0.5 5,070,472 - Xcc-8004.5337.1 0.44 -0.1 5,070,472 - Xcc-8004.5337.1 0.44 +1.1 5,070,472 - Xcc-8004.5337.1 0.44 -1.3 5,070,472 - Xcc-8004.5337.1 0.44 +0.5 5,070,599 + Xcc-8004.5337.1 0.57 -0.2 5,070,599 + Xcc-8004.5337.1 0.57 +0.1 5,070,600 - Xcc-8004.5337.1 0.58 +1.1 5,070,603 + Xcc-8004.5337.1 0.58 +0.2 5,070,603 + Xcc-8004.5337.1 0.58 -1.1 5,070,603 + Xcc-8004.5337.1 0.58 -0.3 5,070,603 + Xcc-8004.5337.1 0.58 -0.1 5,070,603 + Xcc-8004.5337.1 0.58 -0.0 5,070,604 - Xcc-8004.5337.1 0.58 +0.8 5,070,604 - Xcc-8004.5337.1 0.58 -0.1 5,070,604 - Xcc-8004.5337.1 0.58 -0.9 5,070,604 - Xcc-8004.5337.1 0.58 +0.6 5,070,604 - Xcc-8004.5337.1 0.58 +0.9 5,070,604 - Xcc-8004.5337.1 0.58 +0.9 5,070,604 - Xcc-8004.5337.1 0.58 +0.2 5,070,604 - Xcc-8004.5337.1 0.58 +0.0 5,070,604 - Xcc-8004.5337.1 0.58 +0.5 5,070,604 - Xcc-8004.5337.1 0.58 +1.5 5,070,604 - Xcc-8004.5337.1 0.58 +0.2
Or see this region's nucleotide sequence