Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.500.1

Experiment: MOKA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.498.1 and Xcc-8004.500.1 are separated by 96 nucleotidesXcc-8004.500.1 and Xcc-8004.501.1 are separated by 287 nucleotidesXcc-8004.501.1 and Xcc-8004.502.1 are separated by 16 nucleotides Xcc-8004.498.1: Xcc-8004.498.1 - Biotin synthesis protein BioC, at 457,378 to 458,262 Xcc-8004.498.1 Xcc-8004.500.1: Xcc-8004.500.1 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 458,359 to 459,141 Xcc-8004.500.1 Xcc-8004.501.1: Xcc-8004.501.1 - hypothetical protein, at 459,429 to 459,917 Xcc-8004.501.1 Xcc-8004.502.1: Xcc-8004.502.1 - Biotin synthesis protein BioH, at 459,934 to 460,695 Xcc-8004.502.1 Position (kb) 458 459 460Strain fitness (log2 ratio) -2 -1 0 1at 457.379 kb on + strandat 457.379 kb on + strandat 457.379 kb on + strandat 457.379 kb on + strandat 457.380 kb on - strandat 457.380 kb on - strandat 457.380 kb on - strandat 457.380 kb on - strandat 457.380 kb on - strandat 457.380 kb on - strandat 457.539 kb on - strand, within Xcc-8004.498.1at 457.655 kb on + strand, within Xcc-8004.498.1at 458.201 kb on + strandat 458.202 kb on - strandat 458.202 kb on - strandat 458.202 kb on - strandat 458.271 kb on + strandat 458.272 kb on - strandat 458.414 kb on + strandat 458.415 kb on - strandat 458.962 kb on + strand, within Xcc-8004.500.1at 458.963 kb on - strand, within Xcc-8004.500.1at 458.963 kb on - strand, within Xcc-8004.500.1at 458.963 kb on - strand, within Xcc-8004.500.1at 459.106 kb on + strandat 459.106 kb on + strandat 459.106 kb on + strandat 459.106 kb on + strandat 459.106 kb on + strandat 459.106 kb on + strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.382 kb on + strandat 459.382 kb on + strandat 459.382 kb on + strandat 459.382 kb on + strandat 459.382 kb on + strandat 459.383 kb on - strandat 459.383 kb on - strandat 459.383 kb on - strandat 459.386 kb on + strandat 459.484 kb on - strand, within Xcc-8004.501.1at 459.549 kb on + strand, within Xcc-8004.501.1at 459.549 kb on + strand, within Xcc-8004.501.1at 459.549 kb on + strand, within Xcc-8004.501.1at 459.550 kb on - strand, within Xcc-8004.501.1at 459.550 kb on - strand, within Xcc-8004.501.1at 459.716 kb on + strand, within Xcc-8004.501.1at 459.716 kb on + strand, within Xcc-8004.501.1at 459.716 kb on + strand, within Xcc-8004.501.1at 459.716 kb on + strand, within Xcc-8004.501.1at 459.716 kb on + strand, within Xcc-8004.501.1at 459.717 kb on - strand, within Xcc-8004.501.1at 459.717 kb on - strand, within Xcc-8004.501.1at 459.717 kb on - strand, within Xcc-8004.501.1at 459.755 kb on + strand, within Xcc-8004.501.1at 459.755 kb on + strand, within Xcc-8004.501.1at 459.755 kb on + strand, within Xcc-8004.501.1at 459.755 kb on + strand, within Xcc-8004.501.1at 459.756 kb on - strand, within Xcc-8004.501.1at 459.756 kb on - strand, within Xcc-8004.501.1at 459.756 kb on - strand, within Xcc-8004.501.1

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Per-strain Table

Position Strand Gene LocusTag Fraction MOKA
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457,379 + -1.3
457,379 + +0.3
457,379 + +0.3
457,379 + -0.5
457,380 - -1.7
457,380 - -1.4
457,380 - +0.5
457,380 - -1.0
457,380 - +0.9
457,380 - +0.3
457,539 - Xcc-8004.498.1 0.18 -0.8
457,655 + Xcc-8004.498.1 0.31 +0.0
458,201 + -0.4
458,202 - +0.6
458,202 - -0.3
458,202 - -2.4
458,271 + +0.1
458,272 - -1.0
458,414 + -0.1
458,415 - +0.8
458,962 + Xcc-8004.500.1 0.77 +0.5
458,963 - Xcc-8004.500.1 0.77 -2.3
458,963 - Xcc-8004.500.1 0.77 -0.9
458,963 - Xcc-8004.500.1 0.77 -0.2
459,106 + +0.7
459,106 + +0.6
459,106 + +0.7
459,106 + -1.5
459,106 + +0.1
459,106 + +0.4
459,107 - +0.0
459,107 - +0.3
459,107 - +0.1
459,107 - +1.4
459,107 - +0.0
459,107 - -0.8
459,107 - -0.6
459,107 - -0.1
459,107 - -0.1
459,107 - -0.3
459,107 - -1.1
459,382 + -1.1
459,382 + +0.6
459,382 + -0.1
459,382 + -0.1
459,382 + -0.7
459,383 - +0.7
459,383 - +1.2
459,383 - -0.2
459,386 + +0.6
459,484 - Xcc-8004.501.1 0.11 -1.0
459,549 + Xcc-8004.501.1 0.25 +0.6
459,549 + Xcc-8004.501.1 0.25 +0.3
459,549 + Xcc-8004.501.1 0.25 +0.8
459,550 - Xcc-8004.501.1 0.25 -0.6
459,550 - Xcc-8004.501.1 0.25 -0.3
459,716 + Xcc-8004.501.1 0.59 +0.5
459,716 + Xcc-8004.501.1 0.59 -0.7
459,716 + Xcc-8004.501.1 0.59 +0.5
459,716 + Xcc-8004.501.1 0.59 +0.2
459,716 + Xcc-8004.501.1 0.59 -0.5
459,717 - Xcc-8004.501.1 0.59 -0.6
459,717 - Xcc-8004.501.1 0.59 +0.3
459,717 - Xcc-8004.501.1 0.59 +0.0
459,755 + Xcc-8004.501.1 0.67 -1.3
459,755 + Xcc-8004.501.1 0.67 +0.8
459,755 + Xcc-8004.501.1 0.67 +0.6
459,755 + Xcc-8004.501.1 0.67 -0.9
459,756 - Xcc-8004.501.1 0.67 +0.4
459,756 - Xcc-8004.501.1 0.67 -0.3
459,756 - Xcc-8004.501.1 0.67 +0.1

Or see this region's nucleotide sequence