Experiment: MOKA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4883.1 and Xcc-8004.4884.1 overlap by 66 nucleotides Xcc-8004.4884.1 and Xcc-8004.4885.1 are separated by 25 nucleotides Xcc-8004.4885.1 and Xcc-8004.4886.1 are separated by 114 nucleotides
Xcc-8004.4883.1: Xcc-8004.4883.1 - Exodeoxyribonuclease III (EC 3.1.11.2), at 4,644,505 to 4,645,395
Xcc-8004.4883.1
Xcc-8004.4884.1: Xcc-8004.4884.1 - Orotate phosphoribosyltransferase (EC 2.4.2.10), at 4,645,330 to 4,646,085
Xcc-8004.4884.1
Xcc-8004.4885.1: Xcc-8004.4885.1 - Exonuclease SbcC, at 4,646,111 to 4,646,773
Xcc-8004.4885.1
Xcc-8004.4886.1: Xcc-8004.4886.1 - Chromosome (plasmid) partitioning protein ParA, at 4,646,888 to 4,647,685
Xcc-8004.4886.1
Position (kb) 4645
4646
4647 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4644.390 kb on + strand at 4644.391 kb on - strand at 4644.406 kb on + strand at 4644.406 kb on + strand at 4644.406 kb on + strand at 4644.406 kb on + strand at 4644.406 kb on + strand at 4644.406 kb on + strand at 4644.406 kb on + strand at 4644.406 kb on + strand at 4644.407 kb on - strand at 4644.407 kb on - strand at 4644.407 kb on - strand at 4644.407 kb on - strand at 4644.407 kb on - strand at 4644.407 kb on - strand at 4644.407 kb on - strand at 4644.407 kb on - strand at 4644.407 kb on - strand at 4644.407 kb on - strand at 4644.407 kb on - strand at 4644.515 kb on + strand at 4644.515 kb on + strand at 4644.515 kb on + strand at 4644.527 kb on + strand at 4644.527 kb on + strand at 4644.527 kb on + strand at 4644.527 kb on + strand at 4644.527 kb on + strand at 4644.527 kb on + strand at 4644.527 kb on + strand at 4644.527 kb on + strand at 4644.527 kb on + strand at 4644.528 kb on - strand at 4644.528 kb on - strand at 4644.528 kb on - strand at 4644.528 kb on - strand at 4644.528 kb on - strand at 4644.528 kb on - strand at 4644.528 kb on - strand at 4644.528 kb on - strand at 4644.528 kb on - strand at 4644.528 kb on - strand at 4644.528 kb on - strand at 4644.560 kb on + strand at 4644.560 kb on + strand at 4644.561 kb on - strand at 4644.583 kb on - strand at 4644.611 kb on + strand, within Xcc-8004.4883.1 at 4644.611 kb on + strand, within Xcc-8004.4883.1 at 4644.612 kb on - strand, within Xcc-8004.4883.1 at 4644.612 kb on - strand, within Xcc-8004.4883.1 at 4644.612 kb on - strand, within Xcc-8004.4883.1 at 4644.612 kb on - strand, within Xcc-8004.4883.1 at 4644.633 kb on + strand, within Xcc-8004.4883.1 at 4644.633 kb on + strand, within Xcc-8004.4883.1 at 4644.633 kb on + strand, within Xcc-8004.4883.1 at 4644.671 kb on + strand, within Xcc-8004.4883.1 at 4644.671 kb on + strand, within Xcc-8004.4883.1 at 4644.671 kb on + strand, within Xcc-8004.4883.1 at 4644.671 kb on + strand, within Xcc-8004.4883.1 at 4644.671 kb on + strand, within Xcc-8004.4883.1 at 4644.671 kb on + strand, within Xcc-8004.4883.1 at 4644.672 kb on - strand, within Xcc-8004.4883.1 at 4644.672 kb on - strand, within Xcc-8004.4883.1 at 4644.672 kb on - strand, within Xcc-8004.4883.1 at 4644.672 kb on - strand, within Xcc-8004.4883.1 at 4644.672 kb on - strand, within Xcc-8004.4883.1 at 4644.701 kb on + strand, within Xcc-8004.4883.1 at 4644.701 kb on + strand, within Xcc-8004.4883.1 at 4644.702 kb on - strand, within Xcc-8004.4883.1 at 4644.702 kb on - strand, within Xcc-8004.4883.1 at 4644.702 kb on - strand, within Xcc-8004.4883.1 at 4644.702 kb on - strand, within Xcc-8004.4883.1 at 4644.875 kb on + strand, within Xcc-8004.4883.1 at 4644.875 kb on + strand, within Xcc-8004.4883.1 at 4644.875 kb on + strand, within Xcc-8004.4883.1 at 4644.875 kb on + strand, within Xcc-8004.4883.1 at 4644.875 kb on + strand, within Xcc-8004.4883.1 at 4644.875 kb on + strand, within Xcc-8004.4883.1 at 4644.876 kb on - strand, within Xcc-8004.4883.1 at 4644.876 kb on - strand, within Xcc-8004.4883.1 at 4644.876 kb on - strand, within Xcc-8004.4883.1 at 4644.876 kb on - strand, within Xcc-8004.4883.1 at 4644.876 kb on - strand, within Xcc-8004.4883.1 at 4644.876 kb on - strand, within Xcc-8004.4883.1 at 4644.876 kb on - strand, within Xcc-8004.4883.1 at 4644.876 kb on - strand, within Xcc-8004.4883.1 at 4644.876 kb on - strand, within Xcc-8004.4883.1 at 4644.941 kb on + strand, within Xcc-8004.4883.1 at 4644.941 kb on + strand, within Xcc-8004.4883.1 at 4644.942 kb on - strand, within Xcc-8004.4883.1 at 4644.942 kb on - strand, within Xcc-8004.4883.1 at 4644.979 kb on - strand, within Xcc-8004.4883.1 at 4644.980 kb on + strand, within Xcc-8004.4883.1 at 4644.980 kb on + strand, within Xcc-8004.4883.1 at 4644.980 kb on + strand, within Xcc-8004.4883.1 at 4644.980 kb on + strand, within Xcc-8004.4883.1 at 4644.980 kb on + strand, within Xcc-8004.4883.1 at 4644.980 kb on + strand, within Xcc-8004.4883.1 at 4644.980 kb on + strand, within Xcc-8004.4883.1 at 4644.980 kb on + strand, within Xcc-8004.4883.1 at 4644.981 kb on - strand, within Xcc-8004.4883.1 at 4644.981 kb on - strand, within Xcc-8004.4883.1 at 4644.981 kb on - strand, within Xcc-8004.4883.1 at 4644.981 kb on - strand, within Xcc-8004.4883.1 at 4644.981 kb on - strand, within Xcc-8004.4883.1 at 4644.981 kb on - strand, within Xcc-8004.4883.1 at 4644.981 kb on - strand, within Xcc-8004.4883.1 at 4645.022 kb on + strand, within Xcc-8004.4883.1 at 4645.091 kb on + strand, within Xcc-8004.4883.1 at 4645.091 kb on + strand, within Xcc-8004.4883.1 at 4645.092 kb on - strand, within Xcc-8004.4883.1 at 4645.092 kb on - strand, within Xcc-8004.4883.1 at 4645.092 kb on - strand, within Xcc-8004.4883.1 at 4645.109 kb on + strand, within Xcc-8004.4883.1 at 4645.109 kb on + strand, within Xcc-8004.4883.1 at 4645.110 kb on - strand, within Xcc-8004.4883.1 at 4645.110 kb on - strand, within Xcc-8004.4883.1 at 4645.110 kb on - strand, within Xcc-8004.4883.1 at 4645.110 kb on - strand, within Xcc-8004.4883.1 at 4645.110 kb on - strand, within Xcc-8004.4883.1 at 4645.110 kb on - strand, within Xcc-8004.4883.1 at 4645.148 kb on + strand, within Xcc-8004.4883.1 at 4645.148 kb on + strand, within Xcc-8004.4883.1 at 4645.148 kb on + strand, within Xcc-8004.4883.1 at 4645.149 kb on - strand, within Xcc-8004.4883.1 at 4645.149 kb on - strand, within Xcc-8004.4883.1 at 4645.257 kb on + strand, within Xcc-8004.4883.1 at 4645.257 kb on + strand, within Xcc-8004.4883.1 at 4645.258 kb on - strand, within Xcc-8004.4883.1 at 4645.258 kb on - strand, within Xcc-8004.4883.1 at 4645.258 kb on - strand, within Xcc-8004.4883.1 at 4645.305 kb on + strand, within Xcc-8004.4883.1 at 4645.305 kb on + strand, within Xcc-8004.4883.1 at 4645.305 kb on + strand, within Xcc-8004.4883.1 at 4645.305 kb on + strand, within Xcc-8004.4883.1 at 4645.305 kb on + strand, within Xcc-8004.4883.1 at 4645.306 kb on - strand, within Xcc-8004.4883.1 at 4645.306 kb on - strand, within Xcc-8004.4883.1 at 4645.306 kb on - strand, within Xcc-8004.4883.1 at 4645.306 kb on - strand, within Xcc-8004.4883.1 at 4645.306 kb on - strand, within Xcc-8004.4883.1 at 4645.306 kb on - strand, within Xcc-8004.4883.1 at 4645.306 kb on - strand, within Xcc-8004.4883.1 at 4645.306 kb on - strand, within Xcc-8004.4883.1 at 4645.306 kb on - strand, within Xcc-8004.4883.1 at 4645.306 kb on - strand, within Xcc-8004.4883.1 at 4645.306 kb on - strand, within Xcc-8004.4883.1 at 4645.306 kb on - strand, within Xcc-8004.4883.1 at 4645.306 kb on - strand, within Xcc-8004.4883.1 at 4645.341 kb on + strand at 4645.341 kb on + strand at 4645.341 kb on + strand at 4645.341 kb on + strand at 4645.342 kb on - strand at 4645.348 kb on + strand at 4645.348 kb on + strand at 4645.348 kb on + strand at 4645.349 kb on - strand at 4645.349 kb on - strand at 4645.349 kb on - strand at 4645.349 kb on - strand at 4645.390 kb on + strand at 4645.390 kb on + strand at 4645.390 kb on + strand at 4645.391 kb on - strand at 4645.391 kb on - strand at 4645.391 kb on - strand at 4645.391 kb on - strand at 4645.407 kb on + strand, within Xcc-8004.4884.1 at 4645.407 kb on + strand, within Xcc-8004.4884.1 at 4645.407 kb on + strand, within Xcc-8004.4884.1 at 4646.050 kb on + strand at 4646.086 kb on + strand at 4646.086 kb on + strand at 4646.086 kb on + strand at 4646.087 kb on - strand at 4646.087 kb on - strand at 4646.087 kb on - strand at 4646.118 kb on + strand at 4646.118 kb on + strand at 4646.119 kb on - strand at 4646.119 kb on - strand at 4646.119 kb on - strand at 4646.137 kb on - strand at 4646.137 kb on - strand at 4646.210 kb on + strand, within Xcc-8004.4885.1 at 4646.210 kb on + strand, within Xcc-8004.4885.1 at 4646.210 kb on + strand, within Xcc-8004.4885.1 at 4646.210 kb on + strand, within Xcc-8004.4885.1 at 4646.210 kb on + strand, within Xcc-8004.4885.1 at 4646.210 kb on + strand, within Xcc-8004.4885.1 at 4646.211 kb on - strand, within Xcc-8004.4885.1 at 4646.211 kb on - strand, within Xcc-8004.4885.1 at 4646.211 kb on - strand, within Xcc-8004.4885.1 at 4646.211 kb on - strand, within Xcc-8004.4885.1 at 4646.211 kb on - strand, within Xcc-8004.4885.1 at 4646.211 kb on - strand, within Xcc-8004.4885.1 at 4646.211 kb on - strand, within Xcc-8004.4885.1 at 4646.211 kb on - strand, within Xcc-8004.4885.1 at 4646.249 kb on - strand, within Xcc-8004.4885.1 at 4646.441 kb on + strand, within Xcc-8004.4885.1 at 4646.441 kb on + strand, within Xcc-8004.4885.1 at 4646.441 kb on + strand, within Xcc-8004.4885.1 at 4646.442 kb on - strand, within Xcc-8004.4885.1 at 4646.442 kb on - strand, within Xcc-8004.4885.1 at 4646.708 kb on - strand at 4646.848 kb on + strand at 4646.861 kb on + strand at 4646.861 kb on + strand at 4646.861 kb on + strand at 4646.861 kb on + strand at 4646.861 kb on + strand at 4646.861 kb on + strand at 4646.861 kb on + strand at 4646.861 kb on + strand at 4646.862 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MOKA remove 4,644,390 + +0.2 4,644,391 - -0.9 4,644,406 + +1.0 4,644,406 + +0.4 4,644,406 + +0.7 4,644,406 + -0.2 4,644,406 + -0.4 4,644,406 + -0.5 4,644,406 + -0.2 4,644,406 + +0.2 4,644,407 - +0.1 4,644,407 - +1.0 4,644,407 - +0.8 4,644,407 - +0.8 4,644,407 - +1.6 4,644,407 - +0.2 4,644,407 - -0.2 4,644,407 - +0.2 4,644,407 - +0.4 4,644,407 - -0.6 4,644,407 - -0.6 4,644,515 + -0.1 4,644,515 + -1.0 4,644,515 + -1.0 4,644,527 + -1.1 4,644,527 + -0.2 4,644,527 + +0.6 4,644,527 + +0.3 4,644,527 + +0.4 4,644,527 + -0.1 4,644,527 + +0.3 4,644,527 + -0.6 4,644,527 + -0.1 4,644,528 - -0.6 4,644,528 - -0.7 4,644,528 - +0.1 4,644,528 - -0.5 4,644,528 - -0.6 4,644,528 - -2.8 4,644,528 - -0.5 4,644,528 - +1.0 4,644,528 - -1.1 4,644,528 - -0.7 4,644,528 - -1.3 4,644,560 + -0.2 4,644,560 + +0.3 4,644,561 - +0.0 4,644,583 - -1.0 4,644,611 + Xcc-8004.4883.1 0.12 -0.5 4,644,611 + Xcc-8004.4883.1 0.12 -1.3 4,644,612 - Xcc-8004.4883.1 0.12 +0.6 4,644,612 - Xcc-8004.4883.1 0.12 -0.4 4,644,612 - Xcc-8004.4883.1 0.12 -1.7 4,644,612 - Xcc-8004.4883.1 0.12 -0.7 4,644,633 + Xcc-8004.4883.1 0.14 -0.1 4,644,633 + Xcc-8004.4883.1 0.14 +1.6 4,644,633 + Xcc-8004.4883.1 0.14 +0.1 4,644,671 + Xcc-8004.4883.1 0.19 -0.2 4,644,671 + Xcc-8004.4883.1 0.19 +0.0 4,644,671 + Xcc-8004.4883.1 0.19 -0.4 4,644,671 + Xcc-8004.4883.1 0.19 -0.5 4,644,671 + Xcc-8004.4883.1 0.19 +0.2 4,644,671 + Xcc-8004.4883.1 0.19 -1.7 4,644,672 - Xcc-8004.4883.1 0.19 -0.2 4,644,672 - Xcc-8004.4883.1 0.19 -1.6 4,644,672 - Xcc-8004.4883.1 0.19 +0.1 4,644,672 - Xcc-8004.4883.1 0.19 -1.9 4,644,672 - Xcc-8004.4883.1 0.19 +0.7 4,644,701 + Xcc-8004.4883.1 0.22 +0.3 4,644,701 + Xcc-8004.4883.1 0.22 +0.3 4,644,702 - Xcc-8004.4883.1 0.22 +1.5 4,644,702 - Xcc-8004.4883.1 0.22 +0.3 4,644,702 - Xcc-8004.4883.1 0.22 +0.9 4,644,702 - Xcc-8004.4883.1 0.22 -1.0 4,644,875 + Xcc-8004.4883.1 0.42 -0.2 4,644,875 + Xcc-8004.4883.1 0.42 +0.4 4,644,875 + Xcc-8004.4883.1 0.42 -1.9 4,644,875 + Xcc-8004.4883.1 0.42 +1.4 4,644,875 + Xcc-8004.4883.1 0.42 +0.2 4,644,875 + Xcc-8004.4883.1 0.42 +0.6 4,644,876 - Xcc-8004.4883.1 0.42 -0.2 4,644,876 - Xcc-8004.4883.1 0.42 -1.3 4,644,876 - Xcc-8004.4883.1 0.42 +0.6 4,644,876 - Xcc-8004.4883.1 0.42 -0.2 4,644,876 - Xcc-8004.4883.1 0.42 -0.7 4,644,876 - Xcc-8004.4883.1 0.42 +0.2 4,644,876 - Xcc-8004.4883.1 0.42 +1.0 4,644,876 - Xcc-8004.4883.1 0.42 -0.4 4,644,876 - Xcc-8004.4883.1 0.42 -0.8 4,644,941 + Xcc-8004.4883.1 0.49 +0.7 4,644,941 + Xcc-8004.4883.1 0.49 -0.9 4,644,942 - Xcc-8004.4883.1 0.49 -1.4 4,644,942 - Xcc-8004.4883.1 0.49 +0.1 4,644,979 - Xcc-8004.4883.1 0.53 +0.0 4,644,980 + Xcc-8004.4883.1 0.53 +0.4 4,644,980 + Xcc-8004.4883.1 0.53 +0.9 4,644,980 + Xcc-8004.4883.1 0.53 -0.2 4,644,980 + Xcc-8004.4883.1 0.53 -0.6 4,644,980 + Xcc-8004.4883.1 0.53 +0.9 4,644,980 + Xcc-8004.4883.1 0.53 -0.7 4,644,980 + Xcc-8004.4883.1 0.53 -0.5 4,644,980 + Xcc-8004.4883.1 0.53 -0.3 4,644,981 - Xcc-8004.4883.1 0.53 +0.4 4,644,981 - Xcc-8004.4883.1 0.53 +0.7 4,644,981 - Xcc-8004.4883.1 0.53 +0.0 4,644,981 - Xcc-8004.4883.1 0.53 -0.4 4,644,981 - Xcc-8004.4883.1 0.53 -0.4 4,644,981 - Xcc-8004.4883.1 0.53 -0.6 4,644,981 - Xcc-8004.4883.1 0.53 +0.7 4,645,022 + Xcc-8004.4883.1 0.58 -0.1 4,645,091 + Xcc-8004.4883.1 0.66 -0.5 4,645,091 + Xcc-8004.4883.1 0.66 +0.7 4,645,092 - Xcc-8004.4883.1 0.66 -2.0 4,645,092 - Xcc-8004.4883.1 0.66 -0.4 4,645,092 - Xcc-8004.4883.1 0.66 +0.9 4,645,109 + Xcc-8004.4883.1 0.68 -0.6 4,645,109 + Xcc-8004.4883.1 0.68 -0.4 4,645,110 - Xcc-8004.4883.1 0.68 +1.6 4,645,110 - Xcc-8004.4883.1 0.68 +0.2 4,645,110 - Xcc-8004.4883.1 0.68 +0.5 4,645,110 - Xcc-8004.4883.1 0.68 +0.2 4,645,110 - Xcc-8004.4883.1 0.68 -1.2 4,645,110 - Xcc-8004.4883.1 0.68 +0.1 4,645,148 + Xcc-8004.4883.1 0.72 +0.2 4,645,148 + Xcc-8004.4883.1 0.72 -0.2 4,645,148 + Xcc-8004.4883.1 0.72 +0.2 4,645,149 - Xcc-8004.4883.1 0.72 -1.4 4,645,149 - Xcc-8004.4883.1 0.72 -0.3 4,645,257 + Xcc-8004.4883.1 0.84 -1.5 4,645,257 + Xcc-8004.4883.1 0.84 +1.0 4,645,258 - Xcc-8004.4883.1 0.85 +0.3 4,645,258 - Xcc-8004.4883.1 0.85 +0.6 4,645,258 - Xcc-8004.4883.1 0.85 -0.2 4,645,305 + Xcc-8004.4883.1 0.90 +0.6 4,645,305 + Xcc-8004.4883.1 0.90 -1.9 4,645,305 + Xcc-8004.4883.1 0.90 -1.6 4,645,305 + Xcc-8004.4883.1 0.90 -0.1 4,645,305 + Xcc-8004.4883.1 0.90 -0.4 4,645,306 - Xcc-8004.4883.1 0.90 -0.4 4,645,306 - Xcc-8004.4883.1 0.90 -0.3 4,645,306 - Xcc-8004.4883.1 0.90 +0.4 4,645,306 - Xcc-8004.4883.1 0.90 -0.7 4,645,306 - Xcc-8004.4883.1 0.90 +0.6 4,645,306 - Xcc-8004.4883.1 0.90 -1.3 4,645,306 - Xcc-8004.4883.1 0.90 +0.7 4,645,306 - Xcc-8004.4883.1 0.90 -0.3 4,645,306 - Xcc-8004.4883.1 0.90 -0.7 4,645,306 - Xcc-8004.4883.1 0.90 -0.4 4,645,306 - Xcc-8004.4883.1 0.90 +0.0 4,645,306 - Xcc-8004.4883.1 0.90 -0.7 4,645,306 - Xcc-8004.4883.1 0.90 +0.2 4,645,341 + -0.1 4,645,341 + -0.1 4,645,341 + +0.5 4,645,341 + -0.3 4,645,342 - +0.5 4,645,348 + -1.0 4,645,348 + -0.3 4,645,348 + +0.6 4,645,349 - -1.4 4,645,349 - -0.3 4,645,349 - -1.8 4,645,349 - -0.5 4,645,390 + +0.4 4,645,390 + +0.2 4,645,390 + +0.0 4,645,391 - +0.6 4,645,391 - +0.0 4,645,391 - -0.4 4,645,391 - -1.1 4,645,407 + Xcc-8004.4884.1 0.10 -0.6 4,645,407 + Xcc-8004.4884.1 0.10 -1.7 4,645,407 + Xcc-8004.4884.1 0.10 -1.6 4,646,050 + -0.1 4,646,086 + -0.1 4,646,086 + +1.0 4,646,086 + +0.0 4,646,087 - +1.1 4,646,087 - -0.3 4,646,087 - -0.6 4,646,118 + -0.2 4,646,118 + +0.7 4,646,119 - +0.5 4,646,119 - -0.0 4,646,119 - -1.3 4,646,137 - -0.1 4,646,137 - +0.3 4,646,210 + Xcc-8004.4885.1 0.15 +1.2 4,646,210 + Xcc-8004.4885.1 0.15 -0.2 4,646,210 + Xcc-8004.4885.1 0.15 +0.1 4,646,210 + Xcc-8004.4885.1 0.15 +0.2 4,646,210 + Xcc-8004.4885.1 0.15 -0.2 4,646,210 + Xcc-8004.4885.1 0.15 +1.3 4,646,211 - Xcc-8004.4885.1 0.15 -0.1 4,646,211 - Xcc-8004.4885.1 0.15 -0.8 4,646,211 - Xcc-8004.4885.1 0.15 -0.6 4,646,211 - Xcc-8004.4885.1 0.15 -0.2 4,646,211 - Xcc-8004.4885.1 0.15 -0.4 4,646,211 - Xcc-8004.4885.1 0.15 -0.0 4,646,211 - Xcc-8004.4885.1 0.15 +0.4 4,646,211 - Xcc-8004.4885.1 0.15 +1.2 4,646,249 - Xcc-8004.4885.1 0.21 -1.1 4,646,441 + Xcc-8004.4885.1 0.50 -1.0 4,646,441 + Xcc-8004.4885.1 0.50 -1.0 4,646,441 + Xcc-8004.4885.1 0.50 -0.4 4,646,442 - Xcc-8004.4885.1 0.50 +0.7 4,646,442 - Xcc-8004.4885.1 0.50 -0.7 4,646,708 - -1.2 4,646,848 + -0.9 4,646,861 + -0.3 4,646,861 + -0.2 4,646,861 + +0.6 4,646,861 + +0.3 4,646,861 + +0.2 4,646,861 + +0.0 4,646,861 + -0.4 4,646,861 + -0.2 4,646,862 - -0.4
Or see this region's nucleotide sequence