Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4852.1

Experiment: MOKA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4851.1 and Xcc-8004.4852.1 are separated by 31 nucleotidesXcc-8004.4852.1 and Xcc-8004.4853.1 are separated by 165 nucleotidesXcc-8004.4853.1 and Xcc-8004.4854.1 overlap by 4 nucleotides Xcc-8004.4851.1: Xcc-8004.4851.1 - FIG01211087: hypothetical protein, at 4,616,210 to 4,617,367 Xcc-8004.4851.1 Xcc-8004.4852.1: Xcc-8004.4852.1 - hypothetical protein, at 4,617,399 to 4,617,998 Xcc-8004.4852.1 Xcc-8004.4853.1: Xcc-8004.4853.1 - hypothetical protein, at 4,618,164 to 4,618,562 Xcc-8004.4853.1 Xcc-8004.4854.1: Xcc-8004.4854.1 - FIG01213399: hypothetical protein, at 4,618,559 to 4,618,870 Xcc-8004.4854.1 Position (kb) 4617 4618Strain fitness (log2 ratio) -1 0 1 2at 4616.405 kb on + strand, within Xcc-8004.4851.1at 4616.405 kb on + strand, within Xcc-8004.4851.1at 4616.432 kb on + strand, within Xcc-8004.4851.1at 4616.592 kb on + strand, within Xcc-8004.4851.1at 4616.695 kb on + strand, within Xcc-8004.4851.1at 4616.695 kb on + strand, within Xcc-8004.4851.1at 4616.695 kb on + strand, within Xcc-8004.4851.1at 4616.695 kb on + strand, within Xcc-8004.4851.1at 4616.695 kb on + strand, within Xcc-8004.4851.1at 4616.695 kb on + strand, within Xcc-8004.4851.1at 4616.696 kb on - strand, within Xcc-8004.4851.1at 4616.696 kb on - strand, within Xcc-8004.4851.1at 4616.696 kb on - strand, within Xcc-8004.4851.1at 4616.696 kb on - strand, within Xcc-8004.4851.1at 4616.696 kb on - strand, within Xcc-8004.4851.1at 4616.757 kb on + strand, within Xcc-8004.4851.1at 4616.757 kb on + strand, within Xcc-8004.4851.1at 4616.758 kb on - strand, within Xcc-8004.4851.1at 4616.758 kb on - strand, within Xcc-8004.4851.1at 4616.769 kb on + strand, within Xcc-8004.4851.1at 4616.781 kb on + strand, within Xcc-8004.4851.1at 4616.798 kb on - strand, within Xcc-8004.4851.1at 4616.905 kb on - strand, within Xcc-8004.4851.1at 4616.905 kb on - strand, within Xcc-8004.4851.1at 4616.957 kb on - strand, within Xcc-8004.4851.1at 4616.961 kb on - strand, within Xcc-8004.4851.1at 4616.978 kb on + strand, within Xcc-8004.4851.1at 4616.990 kb on - strand, within Xcc-8004.4851.1at 4617.031 kb on - strand, within Xcc-8004.4851.1at 4617.144 kb on - strand, within Xcc-8004.4851.1at 4617.144 kb on - strand, within Xcc-8004.4851.1at 4617.144 kb on - strand, within Xcc-8004.4851.1at 4617.166 kb on - strand, within Xcc-8004.4851.1at 4617.166 kb on - strand, within Xcc-8004.4851.1at 4617.166 kb on - strand, within Xcc-8004.4851.1at 4617.166 kb on - strand, within Xcc-8004.4851.1at 4617.191 kb on + strand, within Xcc-8004.4851.1at 4617.191 kb on + strand, within Xcc-8004.4851.1at 4617.192 kb on - strand, within Xcc-8004.4851.1at 4617.400 kb on + strandat 4617.421 kb on + strandat 4617.421 kb on + strandat 4617.421 kb on + strandat 4617.490 kb on + strand, within Xcc-8004.4852.1at 4617.737 kb on + strand, within Xcc-8004.4852.1at 4617.900 kb on + strand, within Xcc-8004.4852.1at 4617.900 kb on + strand, within Xcc-8004.4852.1at 4617.900 kb on + strand, within Xcc-8004.4852.1at 4617.922 kb on - strand, within Xcc-8004.4852.1at 4617.947 kb on + strandat 4617.947 kb on + strandat 4617.947 kb on + strandat 4617.947 kb on + strandat 4617.948 kb on - strandat 4617.948 kb on - strandat 4618.015 kb on + strandat 4618.016 kb on - strandat 4618.046 kb on - strandat 4618.160 kb on + strandat 4618.160 kb on + strandat 4618.161 kb on - strandat 4618.161 kb on - strandat 4618.161 kb on - strandat 4618.233 kb on + strand, within Xcc-8004.4853.1at 4618.233 kb on + strand, within Xcc-8004.4853.1at 4618.233 kb on + strand, within Xcc-8004.4853.1at 4618.234 kb on - strand, within Xcc-8004.4853.1at 4618.234 kb on - strand, within Xcc-8004.4853.1at 4618.234 kb on - strand, within Xcc-8004.4853.1at 4618.234 kb on - strand, within Xcc-8004.4853.1at 4618.343 kb on - strand, within Xcc-8004.4853.1at 4618.591 kb on + strand, within Xcc-8004.4854.1at 4618.591 kb on + strand, within Xcc-8004.4854.1at 4618.592 kb on - strand, within Xcc-8004.4854.1at 4618.592 kb on - strand, within Xcc-8004.4854.1at 4618.592 kb on - strand, within Xcc-8004.4854.1at 4618.714 kb on + strand, within Xcc-8004.4854.1at 4618.715 kb on - strand, within Xcc-8004.4854.1at 4618.751 kb on + strand, within Xcc-8004.4854.1at 4618.751 kb on + strand, within Xcc-8004.4854.1at 4618.751 kb on + strand, within Xcc-8004.4854.1at 4618.751 kb on + strand, within Xcc-8004.4854.1at 4618.751 kb on + strand, within Xcc-8004.4854.1at 4618.751 kb on + strand, within Xcc-8004.4854.1at 4618.752 kb on - strand, within Xcc-8004.4854.1at 4618.752 kb on - strand, within Xcc-8004.4854.1at 4618.752 kb on - strand, within Xcc-8004.4854.1at 4618.752 kb on - strand, within Xcc-8004.4854.1at 4618.791 kb on + strand, within Xcc-8004.4854.1at 4618.792 kb on - strand, within Xcc-8004.4854.1at 4618.919 kb on + strandat 4618.920 kb on - strandat 4618.920 kb on - strandat 4618.939 kb on + strandat 4618.939 kb on + strandat 4618.939 kb on + strandat 4618.940 kb on - strandat 4618.940 kb on - strandat 4618.940 kb on - strandat 4618.978 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MOKA
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4,616,405 + Xcc-8004.4851.1 0.17 -0.2
4,616,405 + Xcc-8004.4851.1 0.17 +0.7
4,616,432 + Xcc-8004.4851.1 0.19 -0.6
4,616,592 + Xcc-8004.4851.1 0.33 +0.5
4,616,695 + Xcc-8004.4851.1 0.42 +1.1
4,616,695 + Xcc-8004.4851.1 0.42 +0.8
4,616,695 + Xcc-8004.4851.1 0.42 -0.1
4,616,695 + Xcc-8004.4851.1 0.42 -1.6
4,616,695 + Xcc-8004.4851.1 0.42 +0.3
4,616,695 + Xcc-8004.4851.1 0.42 -0.5
4,616,696 - Xcc-8004.4851.1 0.42 +0.3
4,616,696 - Xcc-8004.4851.1 0.42 +1.2
4,616,696 - Xcc-8004.4851.1 0.42 +0.0
4,616,696 - Xcc-8004.4851.1 0.42 -0.4
4,616,696 - Xcc-8004.4851.1 0.42 -1.4
4,616,757 + Xcc-8004.4851.1 0.47 +1.0
4,616,757 + Xcc-8004.4851.1 0.47 -0.2
4,616,758 - Xcc-8004.4851.1 0.47 -0.4
4,616,758 - Xcc-8004.4851.1 0.47 -0.4
4,616,769 + Xcc-8004.4851.1 0.48 -0.5
4,616,781 + Xcc-8004.4851.1 0.49 -1.6
4,616,798 - Xcc-8004.4851.1 0.51 -0.5
4,616,905 - Xcc-8004.4851.1 0.60 -0.3
4,616,905 - Xcc-8004.4851.1 0.60 +0.4
4,616,957 - Xcc-8004.4851.1 0.65 +0.2
4,616,961 - Xcc-8004.4851.1 0.65 -0.7
4,616,978 + Xcc-8004.4851.1 0.66 +0.3
4,616,990 - Xcc-8004.4851.1 0.67 -1.1
4,617,031 - Xcc-8004.4851.1 0.71 +0.2
4,617,144 - Xcc-8004.4851.1 0.81 -0.6
4,617,144 - Xcc-8004.4851.1 0.81 -0.8
4,617,144 - Xcc-8004.4851.1 0.81 -1.3
4,617,166 - Xcc-8004.4851.1 0.83 +0.9
4,617,166 - Xcc-8004.4851.1 0.83 +0.0
4,617,166 - Xcc-8004.4851.1 0.83 +0.5
4,617,166 - Xcc-8004.4851.1 0.83 +0.4
4,617,191 + Xcc-8004.4851.1 0.85 -0.3
4,617,191 + Xcc-8004.4851.1 0.85 -0.9
4,617,192 - Xcc-8004.4851.1 0.85 +0.4
4,617,400 + -0.8
4,617,421 + +0.4
4,617,421 + +0.6
4,617,421 + +0.4
4,617,490 + Xcc-8004.4852.1 0.15 +0.5
4,617,737 + Xcc-8004.4852.1 0.56 +0.9
4,617,900 + Xcc-8004.4852.1 0.83 -1.2
4,617,900 + Xcc-8004.4852.1 0.83 +1.2
4,617,900 + Xcc-8004.4852.1 0.83 +0.0
4,617,922 - Xcc-8004.4852.1 0.87 +0.6
4,617,947 + -1.0
4,617,947 + +0.6
4,617,947 + -0.7
4,617,947 + +1.0
4,617,948 - -0.8
4,617,948 - -0.5
4,618,015 + +0.0
4,618,016 - +0.5
4,618,046 - -1.1
4,618,160 + -0.7
4,618,160 + -0.1
4,618,161 - -0.5
4,618,161 - +0.1
4,618,161 - +0.7
4,618,233 + Xcc-8004.4853.1 0.17 +0.6
4,618,233 + Xcc-8004.4853.1 0.17 -0.9
4,618,233 + Xcc-8004.4853.1 0.17 +0.5
4,618,234 - Xcc-8004.4853.1 0.18 +1.0
4,618,234 - Xcc-8004.4853.1 0.18 -0.4
4,618,234 - Xcc-8004.4853.1 0.18 -0.6
4,618,234 - Xcc-8004.4853.1 0.18 -0.1
4,618,343 - Xcc-8004.4853.1 0.45 +1.6
4,618,591 + Xcc-8004.4854.1 0.10 +0.4
4,618,591 + Xcc-8004.4854.1 0.10 -1.7
4,618,592 - Xcc-8004.4854.1 0.11 +0.4
4,618,592 - Xcc-8004.4854.1 0.11 +1.6
4,618,592 - Xcc-8004.4854.1 0.11 +1.2
4,618,714 + Xcc-8004.4854.1 0.50 +1.3
4,618,715 - Xcc-8004.4854.1 0.50 -0.7
4,618,751 + Xcc-8004.4854.1 0.62 -0.2
4,618,751 + Xcc-8004.4854.1 0.62 -1.1
4,618,751 + Xcc-8004.4854.1 0.62 -0.1
4,618,751 + Xcc-8004.4854.1 0.62 +1.8
4,618,751 + Xcc-8004.4854.1 0.62 -0.2
4,618,751 + Xcc-8004.4854.1 0.62 +0.6
4,618,752 - Xcc-8004.4854.1 0.62 -0.5
4,618,752 - Xcc-8004.4854.1 0.62 -0.2
4,618,752 - Xcc-8004.4854.1 0.62 +0.3
4,618,752 - Xcc-8004.4854.1 0.62 -0.2
4,618,791 + Xcc-8004.4854.1 0.74 -0.9
4,618,792 - Xcc-8004.4854.1 0.75 -0.3
4,618,919 + +0.2
4,618,920 - -0.3
4,618,920 - +0.4
4,618,939 + +0.4
4,618,939 + +0.9
4,618,939 + -0.9
4,618,940 - +0.2
4,618,940 - -0.2
4,618,940 - -0.7
4,618,978 - -0.1

Or see this region's nucleotide sequence