Experiment: MOKA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4630.1 and Xcc-8004.4631.1 are separated by 182 nucleotides Xcc-8004.4631.1 and Xcc-8004.4633.1 overlap by 100 nucleotides Xcc-8004.4633.1 and Xcc-8004.4634.1 are separated by 150 nucleotides Xcc-8004.4634.1 and Xcc-8004.4635.1 are separated by 139 nucleotides Xcc-8004.4635.1 and Xcc-8004.4637.1 are separated by 284 nucleotides
Xcc-8004.4630.1: Xcc-8004.4630.1 - FIG01210108: hypothetical protein, at 4,413,024 to 4,413,308
Xcc-8004.4630.1
Xcc-8004.4631.1: Xcc-8004.4631.1 - hypothetical protein, at 4,413,491 to 4,414,270
Xcc-8004.4631.1
Xcc-8004.4633.1: Xcc-8004.4633.1 - FIG01210488: hypothetical protein, at 4,414,171 to 4,414,725
Xcc-8004.4633.1
Xcc-8004.4634.1: Xcc-8004.4634.1 - FIG01211407: hypothetical protein, at 4,414,876 to 4,415,157
Xcc-8004.4634.1
Xcc-8004.4635.1: Xcc-8004.4635.1 - hypothetical protein, at 4,415,297 to 4,415,434
Xcc-8004.4635.1
Xcc-8004.4637.1: Xcc-8004.4637.1 - ABC-type multidrug transport system, permease component, at 4,415,719 to 4,416,480
Xcc-8004.4637.1
Position (kb) 4414
4415 Strain fitness (log2 ratio) -2
-1
0
1 at 4413.175 kb on - strand, within Xcc-8004.4630.1 at 4413.344 kb on + strand at 4413.344 kb on + strand at 4413.344 kb on + strand at 4413.345 kb on - strand at 4413.345 kb on - strand at 4413.371 kb on + strand at 4413.371 kb on + strand at 4413.414 kb on + strand at 4413.415 kb on - strand at 4413.443 kb on + strand at 4413.444 kb on - strand at 4413.444 kb on - strand at 4413.606 kb on + strand, within Xcc-8004.4631.1 at 4413.606 kb on + strand, within Xcc-8004.4631.1 at 4413.606 kb on + strand, within Xcc-8004.4631.1 at 4413.606 kb on + strand, within Xcc-8004.4631.1 at 4413.606 kb on + strand, within Xcc-8004.4631.1 at 4413.607 kb on - strand, within Xcc-8004.4631.1 at 4413.669 kb on + strand, within Xcc-8004.4631.1 at 4413.670 kb on - strand, within Xcc-8004.4631.1 at 4413.780 kb on + strand, within Xcc-8004.4631.1 at 4413.947 kb on + strand, within Xcc-8004.4631.1 at 4413.947 kb on + strand, within Xcc-8004.4631.1 at 4413.948 kb on - strand, within Xcc-8004.4631.1 at 4414.006 kb on - strand, within Xcc-8004.4631.1 at 4414.006 kb on - strand, within Xcc-8004.4631.1 at 4414.096 kb on + strand, within Xcc-8004.4631.1 at 4414.268 kb on + strand at 4414.269 kb on - strand at 4414.304 kb on + strand, within Xcc-8004.4633.1 at 4414.475 kb on + strand, within Xcc-8004.4633.1 at 4414.475 kb on + strand, within Xcc-8004.4633.1 at 4414.475 kb on + strand, within Xcc-8004.4633.1 at 4414.476 kb on - strand, within Xcc-8004.4633.1 at 4414.790 kb on - strand at 4415.014 kb on + strand, within Xcc-8004.4634.1 at 4415.014 kb on + strand, within Xcc-8004.4634.1 at 4415.014 kb on + strand, within Xcc-8004.4634.1 at 4415.113 kb on + strand, within Xcc-8004.4634.1 at 4415.113 kb on + strand, within Xcc-8004.4634.1 at 4415.113 kb on + strand, within Xcc-8004.4634.1 at 4415.114 kb on - strand, within Xcc-8004.4634.1 at 4415.114 kb on - strand, within Xcc-8004.4634.1 at 4415.114 kb on - strand, within Xcc-8004.4634.1 at 4415.114 kb on - strand, within Xcc-8004.4634.1 at 4415.114 kb on - strand, within Xcc-8004.4634.1 at 4415.114 kb on - strand, within Xcc-8004.4634.1 at 4415.116 kb on + strand, within Xcc-8004.4634.1 at 4415.116 kb on + strand, within Xcc-8004.4634.1 at 4415.116 kb on + strand, within Xcc-8004.4634.1 at 4415.117 kb on - strand, within Xcc-8004.4634.1 at 4415.215 kb on + strand at 4415.215 kb on + strand at 4415.215 kb on + strand at 4415.215 kb on + strand at 4415.215 kb on + strand at 4415.215 kb on + strand at 4415.215 kb on + strand at 4415.216 kb on - strand at 4415.216 kb on - strand at 4415.216 kb on - strand at 4415.219 kb on + strand at 4415.219 kb on + strand at 4415.220 kb on - strand at 4415.344 kb on + strand, within Xcc-8004.4635.1 at 4415.345 kb on - strand, within Xcc-8004.4635.1 at 4415.345 kb on - strand, within Xcc-8004.4635.1
Per-strain Table
Position Strand Gene LocusTag Fraction MOKA remove 4,413,175 - Xcc-8004.4630.1 0.53 -0.3 4,413,344 + -0.8 4,413,344 + +0.6 4,413,344 + -1.0 4,413,345 - +0.7 4,413,345 - +0.2 4,413,371 + +1.3 4,413,371 + +0.0 4,413,414 + +0.3 4,413,415 - -0.9 4,413,443 + -1.6 4,413,444 - +0.8 4,413,444 - -0.4 4,413,606 + Xcc-8004.4631.1 0.15 -0.4 4,413,606 + Xcc-8004.4631.1 0.15 +0.8 4,413,606 + Xcc-8004.4631.1 0.15 +0.6 4,413,606 + Xcc-8004.4631.1 0.15 -0.2 4,413,606 + Xcc-8004.4631.1 0.15 -1.0 4,413,607 - Xcc-8004.4631.1 0.15 -0.4 4,413,669 + Xcc-8004.4631.1 0.23 +0.8 4,413,670 - Xcc-8004.4631.1 0.23 -1.0 4,413,780 + Xcc-8004.4631.1 0.37 +0.9 4,413,947 + Xcc-8004.4631.1 0.58 +0.6 4,413,947 + Xcc-8004.4631.1 0.58 +0.3 4,413,948 - Xcc-8004.4631.1 0.59 +0.2 4,414,006 - Xcc-8004.4631.1 0.66 +0.2 4,414,006 - Xcc-8004.4631.1 0.66 +0.9 4,414,096 + Xcc-8004.4631.1 0.78 +0.1 4,414,268 + -0.2 4,414,269 - -1.8 4,414,304 + Xcc-8004.4633.1 0.24 -1.2 4,414,475 + Xcc-8004.4633.1 0.55 -1.0 4,414,475 + Xcc-8004.4633.1 0.55 -0.0 4,414,475 + Xcc-8004.4633.1 0.55 -0.3 4,414,476 - Xcc-8004.4633.1 0.55 -2.5 4,414,790 - +0.3 4,415,014 + Xcc-8004.4634.1 0.49 +0.4 4,415,014 + Xcc-8004.4634.1 0.49 +0.0 4,415,014 + Xcc-8004.4634.1 0.49 -1.4 4,415,113 + Xcc-8004.4634.1 0.84 -0.1 4,415,113 + Xcc-8004.4634.1 0.84 +0.4 4,415,113 + Xcc-8004.4634.1 0.84 -0.4 4,415,114 - Xcc-8004.4634.1 0.84 +1.3 4,415,114 - Xcc-8004.4634.1 0.84 -1.3 4,415,114 - Xcc-8004.4634.1 0.84 -0.6 4,415,114 - Xcc-8004.4634.1 0.84 +0.3 4,415,114 - Xcc-8004.4634.1 0.84 -1.0 4,415,114 - Xcc-8004.4634.1 0.84 -0.1 4,415,116 + Xcc-8004.4634.1 0.85 +0.0 4,415,116 + Xcc-8004.4634.1 0.85 -0.4 4,415,116 + Xcc-8004.4634.1 0.85 +0.9 4,415,117 - Xcc-8004.4634.1 0.85 -0.3 4,415,215 + -1.5 4,415,215 + -2.4 4,415,215 + -1.0 4,415,215 + +0.5 4,415,215 + +0.6 4,415,215 + -0.8 4,415,215 + -0.4 4,415,216 - -0.4 4,415,216 - -0.2 4,415,216 - -0.5 4,415,219 + -0.8 4,415,219 + -0.4 4,415,220 - +0.2 4,415,344 + Xcc-8004.4635.1 0.34 -0.1 4,415,345 - Xcc-8004.4635.1 0.35 -1.6 4,415,345 - Xcc-8004.4635.1 0.35 +0.0
Or see this region's nucleotide sequence