Experiment: MOKA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4497.1 and Xcc-8004.4498.1 are separated by 74 nucleotides Xcc-8004.4498.1 and Xcc-8004.4499.1 overlap by 14 nucleotides Xcc-8004.4499.1 and Xcc-8004.4501.1 are separated by 339 nucleotides
Xcc-8004.4497.1: Xcc-8004.4497.1 - Mobile element protein, at 4,304,000 to 4,304,266
Xcc-8004.4497.1
Xcc-8004.4498.1: Xcc-8004.4498.1 - Mobile element protein, at 4,304,341 to 4,305,108
Xcc-8004.4498.1
Xcc-8004.4499.1: Xcc-8004.4499.1 - Mobile element protein, at 4,305,095 to 4,305,484
Xcc-8004.4499.1
Xcc-8004.4501.1: Xcc-8004.4501.1 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 4,305,824 to 4,306,762
Xcc-8004.4501.1
Position (kb) 4305
4306 Strain fitness (log2 ratio) -2
-1
0
1 at 4304.111 kb on + strand, within Xcc-8004.4497.1 at 4304.114 kb on + strand, within Xcc-8004.4497.1 at 4304.114 kb on + strand, within Xcc-8004.4497.1 at 4304.114 kb on + strand, within Xcc-8004.4497.1 at 4304.115 kb on - strand, within Xcc-8004.4497.1 at 4304.208 kb on - strand, within Xcc-8004.4497.1 at 4304.783 kb on - strand, within Xcc-8004.4498.1 at 4304.859 kb on + strand, within Xcc-8004.4498.1 at 4305.010 kb on + strand, within Xcc-8004.4498.1 at 4305.011 kb on - strand, within Xcc-8004.4498.1 at 4305.011 kb on - strand, within Xcc-8004.4498.1 at 4305.011 kb on - strand, within Xcc-8004.4498.1 at 4305.090 kb on + strand at 4305.271 kb on + strand, within Xcc-8004.4499.1 at 4305.432 kb on + strand, within Xcc-8004.4499.1 at 4305.433 kb on - strand, within Xcc-8004.4499.1 at 4305.641 kb on + strand at 4305.641 kb on + strand at 4305.641 kb on + strand at 4305.676 kb on + strand at 4305.677 kb on - strand at 4305.744 kb on + strand at 4305.865 kb on + strand at 4305.865 kb on + strand at 4305.866 kb on - strand at 4306.237 kb on - strand, within Xcc-8004.4501.1 at 4306.237 kb on - strand, within Xcc-8004.4501.1 at 4306.293 kb on + strand, within Xcc-8004.4501.1 at 4306.293 kb on + strand, within Xcc-8004.4501.1 at 4306.293 kb on + strand, within Xcc-8004.4501.1 at 4306.320 kb on + strand, within Xcc-8004.4501.1 at 4306.380 kb on + strand, within Xcc-8004.4501.1
Per-strain Table
Position Strand Gene LocusTag Fraction MOKA remove 4,304,111 + Xcc-8004.4497.1 0.42 -1.0 4,304,114 + Xcc-8004.4497.1 0.43 +0.1 4,304,114 + Xcc-8004.4497.1 0.43 -1.1 4,304,114 + Xcc-8004.4497.1 0.43 -0.4 4,304,115 - Xcc-8004.4497.1 0.43 -0.3 4,304,208 - Xcc-8004.4497.1 0.78 -0.6 4,304,783 - Xcc-8004.4498.1 0.58 +0.6 4,304,859 + Xcc-8004.4498.1 0.67 +0.2 4,305,010 + Xcc-8004.4498.1 0.87 +0.7 4,305,011 - Xcc-8004.4498.1 0.87 -2.2 4,305,011 - Xcc-8004.4498.1 0.87 -0.5 4,305,011 - Xcc-8004.4498.1 0.87 +0.2 4,305,090 + -0.1 4,305,271 + Xcc-8004.4499.1 0.45 -0.0 4,305,432 + Xcc-8004.4499.1 0.86 +1.0 4,305,433 - Xcc-8004.4499.1 0.87 -0.4 4,305,641 + -0.0 4,305,641 + +0.3 4,305,641 + -0.4 4,305,676 + +1.2 4,305,677 - -0.4 4,305,744 + +1.1 4,305,865 + -0.8 4,305,865 + -0.2 4,305,866 - -0.2 4,306,237 - Xcc-8004.4501.1 0.44 +1.1 4,306,237 - Xcc-8004.4501.1 0.44 -2.6 4,306,293 + Xcc-8004.4501.1 0.50 -0.2 4,306,293 + Xcc-8004.4501.1 0.50 -1.6 4,306,293 + Xcc-8004.4501.1 0.50 +0.3 4,306,320 + Xcc-8004.4501.1 0.53 -1.8 4,306,380 + Xcc-8004.4501.1 0.59 -0.1
Or see this region's nucleotide sequence