Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4301.1

Experiment: MOKA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4300.1 and Xcc-8004.4301.1 are separated by 589 nucleotidesXcc-8004.4301.1 and Xcc-8004.4302.1 are separated by 80 nucleotides Xcc-8004.4300.1: Xcc-8004.4300.1 - Voltage-gated potassium channel beta subunit, at 4,115,323 to 4,116,291 Xcc-8004.4300.1 Xcc-8004.4301.1: Xcc-8004.4301.1 - Nucleoside permease NupC, at 4,116,881 to 4,118,179 Xcc-8004.4301.1 Xcc-8004.4302.1: Xcc-8004.4302.1 - Ribokinase (EC 2.7.1.15), at 4,118,260 to 4,119,216 Xcc-8004.4302.1 Position (kb) 4116 4117 4118 4119Strain fitness (log2 ratio) -3 -2 -1 0 1at 4115.881 kb on + strand, within Xcc-8004.4300.1at 4115.881 kb on + strand, within Xcc-8004.4300.1at 4115.882 kb on - strand, within Xcc-8004.4300.1at 4115.882 kb on - strand, within Xcc-8004.4300.1at 4115.882 kb on - strand, within Xcc-8004.4300.1at 4115.927 kb on + strand, within Xcc-8004.4300.1at 4115.927 kb on + strand, within Xcc-8004.4300.1at 4115.927 kb on + strand, within Xcc-8004.4300.1at 4115.927 kb on + strand, within Xcc-8004.4300.1at 4115.928 kb on - strand, within Xcc-8004.4300.1at 4115.928 kb on - strand, within Xcc-8004.4300.1at 4115.940 kb on - strand, within Xcc-8004.4300.1at 4116.063 kb on - strand, within Xcc-8004.4300.1at 4116.063 kb on - strand, within Xcc-8004.4300.1at 4116.131 kb on + strand, within Xcc-8004.4300.1at 4116.131 kb on + strand, within Xcc-8004.4300.1at 4116.131 kb on + strand, within Xcc-8004.4300.1at 4116.131 kb on + strand, within Xcc-8004.4300.1at 4116.131 kb on + strand, within Xcc-8004.4300.1at 4116.131 kb on + strand, within Xcc-8004.4300.1at 4116.131 kb on + strand, within Xcc-8004.4300.1at 4116.131 kb on + strand, within Xcc-8004.4300.1at 4116.131 kb on + strand, within Xcc-8004.4300.1at 4116.132 kb on - strand, within Xcc-8004.4300.1at 4116.284 kb on + strandat 4116.346 kb on + strandat 4116.346 kb on + strandat 4116.346 kb on + strandat 4116.346 kb on + strandat 4116.347 kb on - strandat 4116.347 kb on - strandat 4116.347 kb on - strandat 4116.347 kb on - strandat 4116.347 kb on - strandat 4116.713 kb on - strandat 4116.842 kb on + strandat 4116.843 kb on - strandat 4116.943 kb on + strandat 4116.943 kb on + strandat 4116.943 kb on + strandat 4117.059 kb on + strand, within Xcc-8004.4301.1at 4117.060 kb on - strand, within Xcc-8004.4301.1at 4117.179 kb on + strand, within Xcc-8004.4301.1at 4117.180 kb on - strand, within Xcc-8004.4301.1at 4117.367 kb on + strand, within Xcc-8004.4301.1at 4117.367 kb on + strand, within Xcc-8004.4301.1at 4117.367 kb on + strand, within Xcc-8004.4301.1at 4117.368 kb on - strand, within Xcc-8004.4301.1at 4117.451 kb on + strand, within Xcc-8004.4301.1at 4117.452 kb on - strand, within Xcc-8004.4301.1at 4117.496 kb on + strand, within Xcc-8004.4301.1at 4117.923 kb on - strand, within Xcc-8004.4301.1at 4118.000 kb on + strand, within Xcc-8004.4301.1at 4118.000 kb on + strand, within Xcc-8004.4301.1at 4118.000 kb on + strand, within Xcc-8004.4301.1at 4118.000 kb on + strand, within Xcc-8004.4301.1at 4118.001 kb on - strand, within Xcc-8004.4301.1at 4118.001 kb on - strand, within Xcc-8004.4301.1at 4118.001 kb on - strand, within Xcc-8004.4301.1at 4118.209 kb on + strandat 4118.235 kb on + strandat 4118.235 kb on + strandat 4118.235 kb on + strandat 4118.235 kb on + strandat 4118.236 kb on - strandat 4118.236 kb on - strandat 4118.255 kb on + strandat 4118.255 kb on + strandat 4118.255 kb on + strandat 4118.256 kb on - strandat 4118.256 kb on - strandat 4118.256 kb on - strandat 4118.256 kb on - strandat 4118.259 kb on + strandat 4118.260 kb on - strandat 4118.260 kb on - strandat 4118.353 kb on + strandat 4118.354 kb on - strandat 4118.354 kb on - strandat 4118.542 kb on + strand, within Xcc-8004.4302.1at 4118.543 kb on - strand, within Xcc-8004.4302.1at 4118.543 kb on - strand, within Xcc-8004.4302.1at 4118.543 kb on - strand, within Xcc-8004.4302.1at 4118.543 kb on - strand, within Xcc-8004.4302.1at 4118.543 kb on - strand, within Xcc-8004.4302.1at 4118.543 kb on - strand, within Xcc-8004.4302.1at 4118.543 kb on - strand, within Xcc-8004.4302.1at 4118.543 kb on - strand, within Xcc-8004.4302.1at 4118.543 kb on - strand, within Xcc-8004.4302.1at 4118.543 kb on - strand, within Xcc-8004.4302.1at 4118.543 kb on - strand, within Xcc-8004.4302.1at 4118.543 kb on - strand, within Xcc-8004.4302.1at 4118.792 kb on + strand, within Xcc-8004.4302.1at 4118.792 kb on + strand, within Xcc-8004.4302.1at 4118.886 kb on + strand, within Xcc-8004.4302.1at 4118.886 kb on + strand, within Xcc-8004.4302.1at 4118.886 kb on + strand, within Xcc-8004.4302.1at 4118.887 kb on - strand, within Xcc-8004.4302.1at 4118.887 kb on - strand, within Xcc-8004.4302.1at 4118.887 kb on - strand, within Xcc-8004.4302.1at 4119.143 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MOKA
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4,115,881 + Xcc-8004.4300.1 0.58 +0.1
4,115,881 + Xcc-8004.4300.1 0.58 +0.6
4,115,882 - Xcc-8004.4300.1 0.58 -0.2
4,115,882 - Xcc-8004.4300.1 0.58 -1.1
4,115,882 - Xcc-8004.4300.1 0.58 +1.2
4,115,927 + Xcc-8004.4300.1 0.62 -0.5
4,115,927 + Xcc-8004.4300.1 0.62 +0.2
4,115,927 + Xcc-8004.4300.1 0.62 +1.0
4,115,927 + Xcc-8004.4300.1 0.62 -1.3
4,115,928 - Xcc-8004.4300.1 0.62 -0.4
4,115,928 - Xcc-8004.4300.1 0.62 -0.2
4,115,940 - Xcc-8004.4300.1 0.64 +0.2
4,116,063 - Xcc-8004.4300.1 0.76 +0.3
4,116,063 - Xcc-8004.4300.1 0.76 +0.4
4,116,131 + Xcc-8004.4300.1 0.83 -1.0
4,116,131 + Xcc-8004.4300.1 0.83 -1.5
4,116,131 + Xcc-8004.4300.1 0.83 +1.2
4,116,131 + Xcc-8004.4300.1 0.83 -1.8
4,116,131 + Xcc-8004.4300.1 0.83 +0.0
4,116,131 + Xcc-8004.4300.1 0.83 -0.6
4,116,131 + Xcc-8004.4300.1 0.83 -0.1
4,116,131 + Xcc-8004.4300.1 0.83 -0.8
4,116,131 + Xcc-8004.4300.1 0.83 -0.3
4,116,132 - Xcc-8004.4300.1 0.83 +0.0
4,116,284 + -0.7
4,116,346 + -0.7
4,116,346 + +0.6
4,116,346 + -0.1
4,116,346 + -0.0
4,116,347 - -0.7
4,116,347 - -1.2
4,116,347 - -0.0
4,116,347 - -1.3
4,116,347 - +0.7
4,116,713 - +0.3
4,116,842 + -2.5
4,116,843 - -0.0
4,116,943 + -2.7
4,116,943 + +0.3
4,116,943 + -0.5
4,117,059 + Xcc-8004.4301.1 0.14 -1.7
4,117,060 - Xcc-8004.4301.1 0.14 +0.9
4,117,179 + Xcc-8004.4301.1 0.23 -0.8
4,117,180 - Xcc-8004.4301.1 0.23 +0.3
4,117,367 + Xcc-8004.4301.1 0.37 +0.4
4,117,367 + Xcc-8004.4301.1 0.37 -1.4
4,117,367 + Xcc-8004.4301.1 0.37 +0.2
4,117,368 - Xcc-8004.4301.1 0.37 -0.8
4,117,451 + Xcc-8004.4301.1 0.44 -0.3
4,117,452 - Xcc-8004.4301.1 0.44 -1.1
4,117,496 + Xcc-8004.4301.1 0.47 -1.4
4,117,923 - Xcc-8004.4301.1 0.80 -2.2
4,118,000 + Xcc-8004.4301.1 0.86 -0.1
4,118,000 + Xcc-8004.4301.1 0.86 -1.0
4,118,000 + Xcc-8004.4301.1 0.86 -0.9
4,118,000 + Xcc-8004.4301.1 0.86 -0.8
4,118,001 - Xcc-8004.4301.1 0.86 -1.5
4,118,001 - Xcc-8004.4301.1 0.86 -1.2
4,118,001 - Xcc-8004.4301.1 0.86 -0.7
4,118,209 + +1.2
4,118,235 + +0.2
4,118,235 + -1.0
4,118,235 + -0.1
4,118,235 + -0.2
4,118,236 - -0.2
4,118,236 - +0.3
4,118,255 + +0.8
4,118,255 + -0.9
4,118,255 + -1.0
4,118,256 - -0.4
4,118,256 - +0.1
4,118,256 - -0.0
4,118,256 - +0.1
4,118,259 + -0.7
4,118,260 - +1.0
4,118,260 - -1.7
4,118,353 + +0.1
4,118,354 - -0.2
4,118,354 - -0.2
4,118,542 + Xcc-8004.4302.1 0.29 -0.8
4,118,543 - Xcc-8004.4302.1 0.30 -1.1
4,118,543 - Xcc-8004.4302.1 0.30 -2.8
4,118,543 - Xcc-8004.4302.1 0.30 +0.1
4,118,543 - Xcc-8004.4302.1 0.30 -0.6
4,118,543 - Xcc-8004.4302.1 0.30 +0.6
4,118,543 - Xcc-8004.4302.1 0.30 +0.1
4,118,543 - Xcc-8004.4302.1 0.30 -0.2
4,118,543 - Xcc-8004.4302.1 0.30 -0.7
4,118,543 - Xcc-8004.4302.1 0.30 +0.5
4,118,543 - Xcc-8004.4302.1 0.30 -1.1
4,118,543 - Xcc-8004.4302.1 0.30 -0.4
4,118,543 - Xcc-8004.4302.1 0.30 -1.1
4,118,792 + Xcc-8004.4302.1 0.56 -1.0
4,118,792 + Xcc-8004.4302.1 0.56 -0.2
4,118,886 + Xcc-8004.4302.1 0.65 -0.2
4,118,886 + Xcc-8004.4302.1 0.65 +0.3
4,118,886 + Xcc-8004.4302.1 0.65 -0.2
4,118,887 - Xcc-8004.4302.1 0.66 -0.8
4,118,887 - Xcc-8004.4302.1 0.66 -0.6
4,118,887 - Xcc-8004.4302.1 0.66 -0.8
4,119,143 - -0.4

Or see this region's nucleotide sequence