Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4296.1

Experiment: MOKA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4295.1 and Xcc-8004.4296.1 are separated by 28 nucleotidesXcc-8004.4296.1 and Xcc-8004.4297.1 are separated by 5 nucleotides Xcc-8004.4295.1: Xcc-8004.4295.1 - FIG01211353: hypothetical protein, at 4,110,629 to 4,111,552 Xcc-8004.4295.1 Xcc-8004.4296.1: Xcc-8004.4296.1 - Hemin transport protein, at 4,111,581 to 4,112,222 Xcc-8004.4296.1 Xcc-8004.4297.1: Xcc-8004.4297.1 - Outer membrane hemin receptor, at 4,112,228 to 4,114,459 Xcc-8004.4297.1 Position (kb) 4111 4112 4113Strain fitness (log2 ratio) -2 -1 0 1 2at 4110.594 kb on + strandat 4110.594 kb on + strandat 4110.594 kb on + strandat 4110.630 kb on + strandat 4110.630 kb on + strandat 4110.823 kb on - strand, within Xcc-8004.4295.1at 4110.823 kb on - strand, within Xcc-8004.4295.1at 4110.844 kb on - strand, within Xcc-8004.4295.1at 4110.844 kb on - strand, within Xcc-8004.4295.1at 4110.844 kb on - strand, within Xcc-8004.4295.1at 4110.850 kb on - strand, within Xcc-8004.4295.1at 4110.850 kb on - strand, within Xcc-8004.4295.1at 4110.850 kb on - strand, within Xcc-8004.4295.1at 4110.850 kb on - strand, within Xcc-8004.4295.1at 4111.021 kb on - strand, within Xcc-8004.4295.1at 4111.021 kb on - strand, within Xcc-8004.4295.1at 4111.021 kb on - strand, within Xcc-8004.4295.1at 4111.102 kb on - strand, within Xcc-8004.4295.1at 4111.248 kb on + strand, within Xcc-8004.4295.1at 4111.248 kb on + strand, within Xcc-8004.4295.1at 4111.249 kb on - strand, within Xcc-8004.4295.1at 4111.249 kb on - strand, within Xcc-8004.4295.1at 4111.441 kb on - strand, within Xcc-8004.4295.1at 4111.569 kb on - strandat 4111.809 kb on - strand, within Xcc-8004.4296.1at 4111.812 kb on - strand, within Xcc-8004.4296.1at 4111.899 kb on + strand, within Xcc-8004.4296.1at 4112.119 kb on + strand, within Xcc-8004.4296.1at 4112.260 kb on + strandat 4112.337 kb on + strandat 4112.439 kb on + strandat 4112.439 kb on + strandat 4112.440 kb on - strandat 4112.440 kb on - strandat 4112.442 kb on + strandat 4112.442 kb on + strandat 4112.442 kb on + strandat 4112.443 kb on - strandat 4112.443 kb on - strandat 4112.443 kb on - strandat 4112.595 kb on + strand, within Xcc-8004.4297.1at 4112.596 kb on - strand, within Xcc-8004.4297.1at 4112.596 kb on - strand, within Xcc-8004.4297.1at 4112.748 kb on + strand, within Xcc-8004.4297.1at 4112.748 kb on + strand, within Xcc-8004.4297.1at 4112.778 kb on + strand, within Xcc-8004.4297.1at 4112.778 kb on + strand, within Xcc-8004.4297.1at 4112.778 kb on + strand, within Xcc-8004.4297.1at 4112.779 kb on - strand, within Xcc-8004.4297.1at 4112.779 kb on - strand, within Xcc-8004.4297.1at 4112.779 kb on - strand, within Xcc-8004.4297.1at 4112.781 kb on + strand, within Xcc-8004.4297.1at 4112.781 kb on + strand, within Xcc-8004.4297.1at 4112.782 kb on - strand, within Xcc-8004.4297.1at 4112.782 kb on - strand, within Xcc-8004.4297.1at 4112.925 kb on + strand, within Xcc-8004.4297.1at 4112.926 kb on - strand, within Xcc-8004.4297.1at 4112.952 kb on + strand, within Xcc-8004.4297.1at 4112.953 kb on - strand, within Xcc-8004.4297.1at 4112.953 kb on - strand, within Xcc-8004.4297.1at 4112.962 kb on - strand, within Xcc-8004.4297.1

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Per-strain Table

Position Strand Gene LocusTag Fraction MOKA
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4,110,594 + +2.0
4,110,594 + -1.5
4,110,594 + -0.9
4,110,630 + -0.5
4,110,630 + +1.2
4,110,823 - Xcc-8004.4295.1 0.21 -0.5
4,110,823 - Xcc-8004.4295.1 0.21 +0.1
4,110,844 - Xcc-8004.4295.1 0.23 +2.2
4,110,844 - Xcc-8004.4295.1 0.23 -1.0
4,110,844 - Xcc-8004.4295.1 0.23 +0.1
4,110,850 - Xcc-8004.4295.1 0.24 -0.5
4,110,850 - Xcc-8004.4295.1 0.24 +0.8
4,110,850 - Xcc-8004.4295.1 0.24 -0.6
4,110,850 - Xcc-8004.4295.1 0.24 +0.7
4,111,021 - Xcc-8004.4295.1 0.42 -0.6
4,111,021 - Xcc-8004.4295.1 0.42 -0.0
4,111,021 - Xcc-8004.4295.1 0.42 +0.7
4,111,102 - Xcc-8004.4295.1 0.51 +1.0
4,111,248 + Xcc-8004.4295.1 0.67 +0.7
4,111,248 + Xcc-8004.4295.1 0.67 +0.4
4,111,249 - Xcc-8004.4295.1 0.67 -1.0
4,111,249 - Xcc-8004.4295.1 0.67 +0.0
4,111,441 - Xcc-8004.4295.1 0.88 +0.6
4,111,569 - +0.1
4,111,809 - Xcc-8004.4296.1 0.36 -0.9
4,111,812 - Xcc-8004.4296.1 0.36 -0.1
4,111,899 + Xcc-8004.4296.1 0.50 -1.9
4,112,119 + Xcc-8004.4296.1 0.84 -0.8
4,112,260 + -0.2
4,112,337 + -0.3
4,112,439 + +0.4
4,112,439 + -1.4
4,112,440 - -0.4
4,112,440 - -0.3
4,112,442 + -0.4
4,112,442 + -1.0
4,112,442 + +0.1
4,112,443 - -0.5
4,112,443 - -0.8
4,112,443 - -0.5
4,112,595 + Xcc-8004.4297.1 0.16 -0.7
4,112,596 - Xcc-8004.4297.1 0.16 -1.4
4,112,596 - Xcc-8004.4297.1 0.16 +0.0
4,112,748 + Xcc-8004.4297.1 0.23 -0.5
4,112,748 + Xcc-8004.4297.1 0.23 +0.2
4,112,778 + Xcc-8004.4297.1 0.25 +0.3
4,112,778 + Xcc-8004.4297.1 0.25 +1.6
4,112,778 + Xcc-8004.4297.1 0.25 -1.8
4,112,779 - Xcc-8004.4297.1 0.25 -0.2
4,112,779 - Xcc-8004.4297.1 0.25 +0.1
4,112,779 - Xcc-8004.4297.1 0.25 +0.3
4,112,781 + Xcc-8004.4297.1 0.25 -0.9
4,112,781 + Xcc-8004.4297.1 0.25 -0.8
4,112,782 - Xcc-8004.4297.1 0.25 -1.0
4,112,782 - Xcc-8004.4297.1 0.25 +0.2
4,112,925 + Xcc-8004.4297.1 0.31 +1.5
4,112,926 - Xcc-8004.4297.1 0.31 -2.3
4,112,952 + Xcc-8004.4297.1 0.32 +1.0
4,112,953 - Xcc-8004.4297.1 0.32 -1.1
4,112,953 - Xcc-8004.4297.1 0.32 +0.0
4,112,962 - Xcc-8004.4297.1 0.33 -1.4

Or see this region's nucleotide sequence