Experiment: MOKA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4252.1 and Xcc-8004.4253.1 are separated by 331 nucleotides Xcc-8004.4253.1 and Xcc-8004.4254.1 are separated by 72 nucleotides Xcc-8004.4254.1 and Xcc-8004.4255.1 are separated by 9 nucleotides
Xcc-8004.4252.1: Xcc-8004.4252.1 - O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26), at 4,073,071 to 4,074,543
Xcc-8004.4252.1
Xcc-8004.4253.1: Xcc-8004.4253.1 - Transcriptional regulator, LysR family, at 4,074,875 to 4,075,876
Xcc-8004.4253.1
Xcc-8004.4254.1: Xcc-8004.4254.1 - Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8), at 4,075,949 to 4,076,308
Xcc-8004.4254.1
Xcc-8004.4255.1: Xcc-8004.4255.1 - Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8), at 4,076,318 to 4,077,217
Xcc-8004.4255.1
Position (kb) 4074
4075
4076 Strain fitness (log2 ratio) -1
0
1 at 4074.118 kb on + strand, within Xcc-8004.4252.1 at 4074.236 kb on - strand, within Xcc-8004.4252.1 at 4074.415 kb on + strand at 4074.415 kb on + strand at 4074.415 kb on + strand at 4074.416 kb on - strand at 4074.439 kb on + strand at 4074.439 kb on + strand at 4074.439 kb on + strand at 4074.440 kb on - strand at 4074.440 kb on - strand at 4074.652 kb on + strand at 4074.876 kb on + strand at 4074.903 kb on + strand at 4075.160 kb on - strand, within Xcc-8004.4253.1 at 4075.250 kb on + strand, within Xcc-8004.4253.1 at 4075.603 kb on + strand, within Xcc-8004.4253.1 at 4076.016 kb on + strand, within Xcc-8004.4254.1 at 4076.083 kb on - strand, within Xcc-8004.4254.1 at 4076.265 kb on + strand, within Xcc-8004.4254.1 at 4076.265 kb on + strand, within Xcc-8004.4254.1 at 4076.266 kb on - strand, within Xcc-8004.4254.1 at 4076.433 kb on + strand, within Xcc-8004.4255.1 at 4076.529 kb on + strand, within Xcc-8004.4255.1 at 4076.530 kb on - strand, within Xcc-8004.4255.1 at 4076.536 kb on + strand, within Xcc-8004.4255.1 at 4076.867 kb on + strand, within Xcc-8004.4255.1
Per-strain Table
Position Strand Gene LocusTag Fraction MOKA remove 4,074,118 + Xcc-8004.4252.1 0.71 -0.9 4,074,236 - Xcc-8004.4252.1 0.79 +0.5 4,074,415 + +0.5 4,074,415 + +1.0 4,074,415 + +0.9 4,074,416 - +0.5 4,074,439 + -0.5 4,074,439 + +1.6 4,074,439 + +0.5 4,074,440 - -0.4 4,074,440 - +0.2 4,074,652 + +0.4 4,074,876 + +1.0 4,074,903 + -1.0 4,075,160 - Xcc-8004.4253.1 0.28 +0.1 4,075,250 + Xcc-8004.4253.1 0.37 +0.3 4,075,603 + Xcc-8004.4253.1 0.73 +0.5 4,076,016 + Xcc-8004.4254.1 0.19 -0.9 4,076,083 - Xcc-8004.4254.1 0.37 +0.6 4,076,265 + Xcc-8004.4254.1 0.88 +1.5 4,076,265 + Xcc-8004.4254.1 0.88 +0.0 4,076,266 - Xcc-8004.4254.1 0.88 -1.3 4,076,433 + Xcc-8004.4255.1 0.13 -0.3 4,076,529 + Xcc-8004.4255.1 0.23 -0.3 4,076,530 - Xcc-8004.4255.1 0.24 -0.1 4,076,536 + Xcc-8004.4255.1 0.24 +0.4 4,076,867 + Xcc-8004.4255.1 0.61 +1.4
Or see this region's nucleotide sequence