Experiment: MOKA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4245.1 and Xcc-8004.4246.1 are separated by 167 nucleotides Xcc-8004.4246.1 and Xcc-8004.4247.1 are separated by 144 nucleotides Xcc-8004.4247.1 and Xcc-8004.4248.1 are separated by 33 nucleotides Xcc-8004.4248.1 and Xcc-8004.4249.1 are separated by 86 nucleotides
Xcc-8004.4245.1: Xcc-8004.4245.1 - FIG01213330: hypothetical protein, at 4,068,470 to 4,069,192
Xcc-8004.4245.1
Xcc-8004.4246.1: Xcc-8004.4246.1 - FIG01212910: hypothetical protein, at 4,069,360 to 4,069,818
Xcc-8004.4246.1
Xcc-8004.4247.1: Xcc-8004.4247.1 - Transcriptional regulator, MarR family, at 4,069,963 to 4,070,433
Xcc-8004.4247.1
Xcc-8004.4248.1: Xcc-8004.4248.1 - Enoyl-CoA hydratase (EC 4.2.1.17), at 4,070,467 to 4,071,294
Xcc-8004.4248.1
Xcc-8004.4249.1: Xcc-8004.4249.1 - Aldehyde dehydrogenase (EC 1.2.1.3), at 4,071,381 to 4,072,535
Xcc-8004.4249.1
Position (kb) 4069
4070
4071 Strain fitness (log2 ratio) -1
0
1
2 at 4068.974 kb on + strand, within Xcc-8004.4245.1 at 4068.974 kb on + strand, within Xcc-8004.4245.1 at 4068.974 kb on + strand, within Xcc-8004.4245.1 at 4068.975 kb on - strand, within Xcc-8004.4245.1 at 4069.226 kb on + strand at 4069.226 kb on + strand at 4069.226 kb on + strand at 4069.226 kb on + strand at 4069.226 kb on + strand at 4069.226 kb on + strand at 4069.227 kb on - strand at 4069.227 kb on - strand at 4069.227 kb on - strand at 4069.328 kb on + strand at 4069.328 kb on + strand at 4069.328 kb on + strand at 4069.328 kb on + strand at 4069.328 kb on + strand at 4069.329 kb on - strand at 4069.329 kb on - strand at 4069.329 kb on - strand at 4069.329 kb on - strand at 4069.329 kb on - strand at 4069.389 kb on - strand at 4069.443 kb on + strand, within Xcc-8004.4246.1 at 4069.443 kb on + strand, within Xcc-8004.4246.1 at 4069.444 kb on - strand, within Xcc-8004.4246.1 at 4069.444 kb on - strand, within Xcc-8004.4246.1 at 4069.657 kb on + strand, within Xcc-8004.4246.1 at 4069.658 kb on - strand, within Xcc-8004.4246.1 at 4069.761 kb on + strand, within Xcc-8004.4246.1 at 4069.761 kb on + strand, within Xcc-8004.4246.1 at 4069.816 kb on + strand at 4069.816 kb on + strand at 4069.816 kb on + strand at 4069.817 kb on - strand at 4069.817 kb on - strand at 4069.898 kb on + strand at 4069.902 kb on + strand at 4069.902 kb on + strand at 4070.000 kb on - strand at 4070.245 kb on + strand, within Xcc-8004.4247.1 at 4070.245 kb on + strand, within Xcc-8004.4247.1 at 4070.246 kb on - strand, within Xcc-8004.4247.1 at 4070.246 kb on - strand, within Xcc-8004.4247.1 at 4070.313 kb on + strand, within Xcc-8004.4247.1 at 4070.314 kb on - strand, within Xcc-8004.4247.1 at 4070.439 kb on + strand at 4070.440 kb on - strand at 4070.454 kb on + strand at 4070.454 kb on + strand at 4070.455 kb on - strand at 4070.644 kb on - strand, within Xcc-8004.4248.1 at 4070.678 kb on - strand, within Xcc-8004.4248.1 at 4070.737 kb on + strand, within Xcc-8004.4248.1 at 4070.738 kb on - strand, within Xcc-8004.4248.1 at 4071.052 kb on - strand, within Xcc-8004.4248.1 at 4071.142 kb on + strand, within Xcc-8004.4248.1 at 4071.160 kb on + strand, within Xcc-8004.4248.1 at 4071.160 kb on + strand, within Xcc-8004.4248.1 at 4071.161 kb on - strand, within Xcc-8004.4248.1 at 4071.247 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MOKA remove 4,068,974 + Xcc-8004.4245.1 0.70 -0.5 4,068,974 + Xcc-8004.4245.1 0.70 -0.1 4,068,974 + Xcc-8004.4245.1 0.70 +0.1 4,068,975 - Xcc-8004.4245.1 0.70 +0.6 4,069,226 + +0.7 4,069,226 + -0.2 4,069,226 + -0.7 4,069,226 + -0.6 4,069,226 + +0.4 4,069,226 + +0.7 4,069,227 - +0.8 4,069,227 - +1.0 4,069,227 - +0.6 4,069,328 + -0.9 4,069,328 + +0.8 4,069,328 + -0.4 4,069,328 + -0.6 4,069,328 + -0.4 4,069,329 - -1.7 4,069,329 - -0.0 4,069,329 - +0.1 4,069,329 - -0.4 4,069,329 - -0.6 4,069,389 - +0.7 4,069,443 + Xcc-8004.4246.1 0.18 +1.0 4,069,443 + Xcc-8004.4246.1 0.18 -1.0 4,069,444 - Xcc-8004.4246.1 0.18 -1.1 4,069,444 - Xcc-8004.4246.1 0.18 +0.6 4,069,657 + Xcc-8004.4246.1 0.65 +0.3 4,069,658 - Xcc-8004.4246.1 0.65 -1.5 4,069,761 + Xcc-8004.4246.1 0.87 +0.2 4,069,761 + Xcc-8004.4246.1 0.87 +0.5 4,069,816 + -0.7 4,069,816 + +0.8 4,069,816 + +1.2 4,069,817 - +0.3 4,069,817 - -0.1 4,069,898 + -0.7 4,069,902 + +0.1 4,069,902 + -0.6 4,070,000 - -0.6 4,070,245 + Xcc-8004.4247.1 0.60 -1.5 4,070,245 + Xcc-8004.4247.1 0.60 +0.1 4,070,246 - Xcc-8004.4247.1 0.60 -0.7 4,070,246 - Xcc-8004.4247.1 0.60 -0.2 4,070,313 + Xcc-8004.4247.1 0.74 -0.9 4,070,314 - Xcc-8004.4247.1 0.75 -0.6 4,070,439 + -0.3 4,070,440 - +0.5 4,070,454 + -1.0 4,070,454 + -0.3 4,070,455 - -0.4 4,070,644 - Xcc-8004.4248.1 0.21 +0.1 4,070,678 - Xcc-8004.4248.1 0.25 +2.0 4,070,737 + Xcc-8004.4248.1 0.33 -0.2 4,070,738 - Xcc-8004.4248.1 0.33 +0.7 4,071,052 - Xcc-8004.4248.1 0.71 -1.6 4,071,142 + Xcc-8004.4248.1 0.82 +1.0 4,071,160 + Xcc-8004.4248.1 0.84 -0.1 4,071,160 + Xcc-8004.4248.1 0.84 -0.6 4,071,161 - Xcc-8004.4248.1 0.84 -1.2 4,071,247 + -0.1
Or see this region's nucleotide sequence