Experiment: MOKA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4032.1 and Xcc-8004.4033.1 are separated by 8 nucleotides Xcc-8004.4033.1 and Xcc-8004.4035.1 are separated by 24 nucleotides Xcc-8004.4035.1 and Xcc-8004.4036.1 are separated by 102 nucleotides Xcc-8004.4036.1 and Xcc-8004.4037.1 overlap by 4 nucleotides
Xcc-8004.4032.1: Xcc-8004.4032.1 - DNA polymerase III epsilon subunit (EC 2.7.7.7), at 3,897,466 to 3,898,203
Xcc-8004.4032.1
Xcc-8004.4033.1: Xcc-8004.4033.1 - Ribonuclease HI (EC 3.1.26.4), at 3,898,212 to 3,898,664
Xcc-8004.4033.1
Xcc-8004.4035.1: Xcc-8004.4035.1 - FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-), at 3,898,689 to 3,899,255
Xcc-8004.4035.1
Xcc-8004.4036.1: Xcc-8004.4036.1 - Hydroxyacylglutathione hydrolase (EC 3.1.2.6), at 3,899,358 to 3,900,125
Xcc-8004.4036.1
Xcc-8004.4037.1: Xcc-8004.4037.1 - Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-), at 3,900,122 to 3,901,288
Xcc-8004.4037.1
Position (kb) 3898
3899
3900 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3898.213 kb on + strand at 3898.213 kb on + strand at 3898.213 kb on + strand at 3898.213 kb on + strand at 3898.213 kb on + strand at 3898.213 kb on + strand at 3898.213 kb on + strand at 3898.214 kb on - strand at 3898.214 kb on - strand at 3898.214 kb on - strand at 3898.214 kb on - strand at 3898.214 kb on - strand at 3898.214 kb on - strand at 3898.214 kb on - strand at 3898.214 kb on - strand at 3898.214 kb on - strand at 3898.672 kb on + strand at 3898.672 kb on + strand at 3898.672 kb on + strand at 3898.672 kb on + strand at 3898.673 kb on - strand at 3898.673 kb on - strand at 3898.673 kb on - strand at 3898.673 kb on - strand at 3898.673 kb on - strand at 3898.783 kb on + strand, within Xcc-8004.4035.1 at 3898.783 kb on + strand, within Xcc-8004.4035.1 at 3898.783 kb on + strand, within Xcc-8004.4035.1 at 3898.783 kb on + strand, within Xcc-8004.4035.1 at 3898.783 kb on + strand, within Xcc-8004.4035.1 at 3898.784 kb on - strand, within Xcc-8004.4035.1 at 3898.784 kb on - strand, within Xcc-8004.4035.1 at 3898.784 kb on - strand, within Xcc-8004.4035.1 at 3898.784 kb on - strand, within Xcc-8004.4035.1 at 3898.784 kb on - strand, within Xcc-8004.4035.1 at 3898.784 kb on - strand, within Xcc-8004.4035.1 at 3898.784 kb on - strand, within Xcc-8004.4035.1 at 3898.784 kb on - strand, within Xcc-8004.4035.1 at 3898.784 kb on - strand, within Xcc-8004.4035.1 at 3898.853 kb on - strand, within Xcc-8004.4035.1 at 3898.853 kb on - strand, within Xcc-8004.4035.1 at 3899.146 kb on + strand, within Xcc-8004.4035.1 at 3899.146 kb on + strand, within Xcc-8004.4035.1 at 3899.357 kb on + strand at 3899.357 kb on + strand at 3899.357 kb on + strand at 3899.357 kb on + strand at 3899.358 kb on - strand at 3899.358 kb on - strand at 3899.358 kb on - strand at 3899.394 kb on + strand at 3899.394 kb on + strand at 3899.394 kb on + strand at 3899.394 kb on + strand at 3899.394 kb on + strand at 3899.394 kb on + strand at 3899.394 kb on + strand at 3899.394 kb on + strand at 3899.394 kb on + strand at 3899.394 kb on + strand at 3899.394 kb on + strand at 3899.394 kb on + strand at 3899.394 kb on + strand at 3899.394 kb on + strand at 3899.394 kb on + strand at 3899.394 kb on + strand at 3899.394 kb on + strand at 3899.394 kb on + strand at 3899.394 kb on + strand at 3899.394 kb on + strand at 3899.394 kb on + strand at 3899.394 kb on + strand at 3899.395 kb on - strand at 3899.395 kb on - strand at 3899.395 kb on - strand at 3899.395 kb on - strand at 3899.395 kb on - strand at 3899.395 kb on - strand at 3899.395 kb on - strand at 3899.395 kb on - strand at 3899.395 kb on - strand at 3899.395 kb on - strand at 3899.395 kb on - strand at 3899.395 kb on - strand at 3899.395 kb on - strand at 3899.395 kb on - strand at 3899.395 kb on - strand at 3899.395 kb on - strand at 3899.395 kb on - strand at 3899.395 kb on - strand at 3899.395 kb on - strand at 3899.395 kb on - strand at 3899.532 kb on - strand, within Xcc-8004.4036.1 at 3899.532 kb on - strand, within Xcc-8004.4036.1 at 3899.580 kb on + strand, within Xcc-8004.4036.1 at 3899.706 kb on + strand, within Xcc-8004.4036.1 at 3899.706 kb on + strand, within Xcc-8004.4036.1 at 3899.706 kb on + strand, within Xcc-8004.4036.1 at 3899.706 kb on + strand, within Xcc-8004.4036.1 at 3899.706 kb on + strand, within Xcc-8004.4036.1 at 3899.706 kb on + strand, within Xcc-8004.4036.1 at 3899.706 kb on + strand, within Xcc-8004.4036.1 at 3899.707 kb on - strand, within Xcc-8004.4036.1 at 3899.710 kb on + strand, within Xcc-8004.4036.1 at 3899.710 kb on + strand, within Xcc-8004.4036.1 at 3899.710 kb on + strand, within Xcc-8004.4036.1 at 3899.710 kb on + strand, within Xcc-8004.4036.1 at 3899.710 kb on + strand, within Xcc-8004.4036.1 at 3899.710 kb on + strand, within Xcc-8004.4036.1 at 3899.710 kb on + strand, within Xcc-8004.4036.1 at 3899.710 kb on + strand, within Xcc-8004.4036.1 at 3899.710 kb on + strand, within Xcc-8004.4036.1 at 3899.710 kb on + strand, within Xcc-8004.4036.1 at 3899.710 kb on + strand, within Xcc-8004.4036.1 at 3899.710 kb on + strand, within Xcc-8004.4036.1 at 3899.710 kb on + strand, within Xcc-8004.4036.1 at 3899.710 kb on + strand, within Xcc-8004.4036.1 at 3899.710 kb on + strand, within Xcc-8004.4036.1 at 3899.711 kb on - strand, within Xcc-8004.4036.1 at 3899.711 kb on - strand, within Xcc-8004.4036.1 at 3899.711 kb on - strand, within Xcc-8004.4036.1 at 3899.711 kb on - strand, within Xcc-8004.4036.1 at 3899.711 kb on - strand, within Xcc-8004.4036.1 at 3899.711 kb on - strand, within Xcc-8004.4036.1 at 3899.711 kb on - strand, within Xcc-8004.4036.1 at 3899.711 kb on - strand, within Xcc-8004.4036.1 at 3899.711 kb on - strand, within Xcc-8004.4036.1 at 3899.711 kb on - strand, within Xcc-8004.4036.1 at 3899.711 kb on - strand, within Xcc-8004.4036.1 at 3899.711 kb on - strand, within Xcc-8004.4036.1 at 3899.711 kb on - strand, within Xcc-8004.4036.1 at 3899.711 kb on - strand, within Xcc-8004.4036.1 at 3899.738 kb on + strand, within Xcc-8004.4036.1 at 3899.752 kb on + strand, within Xcc-8004.4036.1 at 3899.752 kb on + strand, within Xcc-8004.4036.1 at 3899.752 kb on + strand, within Xcc-8004.4036.1 at 3899.752 kb on + strand, within Xcc-8004.4036.1 at 3899.753 kb on - strand, within Xcc-8004.4036.1 at 3899.777 kb on + strand, within Xcc-8004.4036.1 at 3899.778 kb on - strand, within Xcc-8004.4036.1 at 3899.778 kb on - strand, within Xcc-8004.4036.1 at 3899.856 kb on + strand, within Xcc-8004.4036.1 at 3899.856 kb on + strand, within Xcc-8004.4036.1 at 3899.856 kb on + strand, within Xcc-8004.4036.1 at 3899.856 kb on + strand, within Xcc-8004.4036.1 at 3899.856 kb on + strand, within Xcc-8004.4036.1 at 3899.856 kb on + strand, within Xcc-8004.4036.1 at 3899.856 kb on + strand, within Xcc-8004.4036.1 at 3899.856 kb on + strand, within Xcc-8004.4036.1 at 3899.857 kb on - strand, within Xcc-8004.4036.1 at 3899.857 kb on - strand, within Xcc-8004.4036.1 at 3899.857 kb on - strand, within Xcc-8004.4036.1 at 3899.857 kb on - strand, within Xcc-8004.4036.1 at 3899.857 kb on - strand, within Xcc-8004.4036.1 at 3899.857 kb on - strand, within Xcc-8004.4036.1 at 3899.857 kb on - strand, within Xcc-8004.4036.1 at 3899.857 kb on - strand, within Xcc-8004.4036.1 at 3899.857 kb on - strand, within Xcc-8004.4036.1 at 3899.857 kb on - strand, within Xcc-8004.4036.1 at 3899.857 kb on - strand, within Xcc-8004.4036.1 at 3899.960 kb on + strand, within Xcc-8004.4036.1 at 3899.960 kb on + strand, within Xcc-8004.4036.1 at 3899.960 kb on + strand, within Xcc-8004.4036.1 at 3899.960 kb on + strand, within Xcc-8004.4036.1 at 3899.961 kb on - strand, within Xcc-8004.4036.1 at 3899.961 kb on - strand, within Xcc-8004.4036.1 at 3900.017 kb on + strand, within Xcc-8004.4036.1 at 3900.017 kb on + strand, within Xcc-8004.4036.1 at 3900.017 kb on + strand, within Xcc-8004.4036.1 at 3900.017 kb on + strand, within Xcc-8004.4036.1 at 3900.017 kb on + strand, within Xcc-8004.4036.1 at 3900.017 kb on + strand, within Xcc-8004.4036.1 at 3900.017 kb on + strand, within Xcc-8004.4036.1 at 3900.017 kb on + strand, within Xcc-8004.4036.1 at 3900.018 kb on - strand, within Xcc-8004.4036.1 at 3900.018 kb on - strand, within Xcc-8004.4036.1 at 3900.018 kb on - strand, within Xcc-8004.4036.1 at 3900.018 kb on - strand, within Xcc-8004.4036.1 at 3900.018 kb on - strand, within Xcc-8004.4036.1 at 3900.018 kb on - strand, within Xcc-8004.4036.1 at 3900.018 kb on - strand, within Xcc-8004.4036.1 at 3900.018 kb on - strand, within Xcc-8004.4036.1 at 3900.082 kb on + strand at 3900.082 kb on + strand at 3900.234 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MOKA remove 3,898,213 + -0.5 3,898,213 + -0.3 3,898,213 + +0.5 3,898,213 + -0.2 3,898,213 + -1.7 3,898,213 + +0.6 3,898,213 + +0.5 3,898,214 - +0.9 3,898,214 - -0.4 3,898,214 - -1.4 3,898,214 - +0.1 3,898,214 - +0.6 3,898,214 - -1.2 3,898,214 - +1.3 3,898,214 - -1.9 3,898,214 - +0.2 3,898,672 + -1.6 3,898,672 + -1.1 3,898,672 + -1.0 3,898,672 + +0.4 3,898,673 - -0.0 3,898,673 - -0.6 3,898,673 - -3.1 3,898,673 - +0.8 3,898,673 - -0.1 3,898,783 + Xcc-8004.4035.1 0.17 -0.6 3,898,783 + Xcc-8004.4035.1 0.17 -0.4 3,898,783 + Xcc-8004.4035.1 0.17 -1.5 3,898,783 + Xcc-8004.4035.1 0.17 -0.7 3,898,783 + Xcc-8004.4035.1 0.17 -0.5 3,898,784 - Xcc-8004.4035.1 0.17 -0.0 3,898,784 - Xcc-8004.4035.1 0.17 -1.6 3,898,784 - Xcc-8004.4035.1 0.17 -1.0 3,898,784 - Xcc-8004.4035.1 0.17 +0.4 3,898,784 - Xcc-8004.4035.1 0.17 -1.0 3,898,784 - Xcc-8004.4035.1 0.17 +0.7 3,898,784 - Xcc-8004.4035.1 0.17 -0.7 3,898,784 - Xcc-8004.4035.1 0.17 +0.1 3,898,784 - Xcc-8004.4035.1 0.17 -0.5 3,898,853 - Xcc-8004.4035.1 0.29 -0.4 3,898,853 - Xcc-8004.4035.1 0.29 +0.1 3,899,146 + Xcc-8004.4035.1 0.81 -1.0 3,899,146 + Xcc-8004.4035.1 0.81 -0.4 3,899,357 + -0.4 3,899,357 + +1.0 3,899,357 + -0.6 3,899,357 + -0.2 3,899,358 - -1.0 3,899,358 - +0.6 3,899,358 - -0.6 3,899,394 + -2.1 3,899,394 + +0.4 3,899,394 + +1.4 3,899,394 + +0.8 3,899,394 + +0.6 3,899,394 + -0.5 3,899,394 + +0.1 3,899,394 + +0.6 3,899,394 + -1.4 3,899,394 + +0.1 3,899,394 + +0.3 3,899,394 + -0.6 3,899,394 + +0.3 3,899,394 + +1.3 3,899,394 + -1.0 3,899,394 + -0.5 3,899,394 + +0.1 3,899,394 + -0.4 3,899,394 + -0.3 3,899,394 + -0.6 3,899,394 + +0.7 3,899,394 + -0.5 3,899,395 - +0.4 3,899,395 - -0.7 3,899,395 - +0.8 3,899,395 - -0.1 3,899,395 - -1.4 3,899,395 - +0.2 3,899,395 - -0.0 3,899,395 - +1.1 3,899,395 - -0.1 3,899,395 - +1.0 3,899,395 - -0.6 3,899,395 - -0.3 3,899,395 - -0.7 3,899,395 - -0.7 3,899,395 - -0.3 3,899,395 - -0.4 3,899,395 - -0.1 3,899,395 - -1.4 3,899,395 - -0.7 3,899,395 - +0.7 3,899,532 - Xcc-8004.4036.1 0.23 +0.5 3,899,532 - Xcc-8004.4036.1 0.23 -0.4 3,899,580 + Xcc-8004.4036.1 0.29 +0.1 3,899,706 + Xcc-8004.4036.1 0.45 +0.1 3,899,706 + Xcc-8004.4036.1 0.45 +1.9 3,899,706 + Xcc-8004.4036.1 0.45 +0.5 3,899,706 + Xcc-8004.4036.1 0.45 -0.2 3,899,706 + Xcc-8004.4036.1 0.45 -1.0 3,899,706 + Xcc-8004.4036.1 0.45 +0.3 3,899,706 + Xcc-8004.4036.1 0.45 -1.2 3,899,707 - Xcc-8004.4036.1 0.45 -0.5 3,899,710 + Xcc-8004.4036.1 0.46 +0.2 3,899,710 + Xcc-8004.4036.1 0.46 -1.7 3,899,710 + Xcc-8004.4036.1 0.46 -0.9 3,899,710 + Xcc-8004.4036.1 0.46 +0.1 3,899,710 + Xcc-8004.4036.1 0.46 +0.4 3,899,710 + Xcc-8004.4036.1 0.46 +0.9 3,899,710 + Xcc-8004.4036.1 0.46 -2.1 3,899,710 + Xcc-8004.4036.1 0.46 -0.6 3,899,710 + Xcc-8004.4036.1 0.46 -0.1 3,899,710 + Xcc-8004.4036.1 0.46 +1.0 3,899,710 + Xcc-8004.4036.1 0.46 -0.1 3,899,710 + Xcc-8004.4036.1 0.46 +1.3 3,899,710 + Xcc-8004.4036.1 0.46 +0.3 3,899,710 + Xcc-8004.4036.1 0.46 +0.4 3,899,710 + Xcc-8004.4036.1 0.46 -2.0 3,899,711 - Xcc-8004.4036.1 0.46 -1.3 3,899,711 - Xcc-8004.4036.1 0.46 +0.5 3,899,711 - Xcc-8004.4036.1 0.46 -0.2 3,899,711 - Xcc-8004.4036.1 0.46 -0.8 3,899,711 - Xcc-8004.4036.1 0.46 -0.7 3,899,711 - Xcc-8004.4036.1 0.46 +0.4 3,899,711 - Xcc-8004.4036.1 0.46 -1.0 3,899,711 - Xcc-8004.4036.1 0.46 -1.1 3,899,711 - Xcc-8004.4036.1 0.46 -1.4 3,899,711 - Xcc-8004.4036.1 0.46 +0.4 3,899,711 - Xcc-8004.4036.1 0.46 +0.2 3,899,711 - Xcc-8004.4036.1 0.46 -2.2 3,899,711 - Xcc-8004.4036.1 0.46 +0.7 3,899,711 - Xcc-8004.4036.1 0.46 -0.7 3,899,738 + Xcc-8004.4036.1 0.49 -0.1 3,899,752 + Xcc-8004.4036.1 0.51 +0.5 3,899,752 + Xcc-8004.4036.1 0.51 -0.2 3,899,752 + Xcc-8004.4036.1 0.51 -1.0 3,899,752 + Xcc-8004.4036.1 0.51 -0.8 3,899,753 - Xcc-8004.4036.1 0.51 -0.1 3,899,777 + Xcc-8004.4036.1 0.55 -0.4 3,899,778 - Xcc-8004.4036.1 0.55 -0.6 3,899,778 - Xcc-8004.4036.1 0.55 +0.7 3,899,856 + Xcc-8004.4036.1 0.65 +0.6 3,899,856 + Xcc-8004.4036.1 0.65 -1.2 3,899,856 + Xcc-8004.4036.1 0.65 -0.9 3,899,856 + Xcc-8004.4036.1 0.65 +0.1 3,899,856 + Xcc-8004.4036.1 0.65 -0.0 3,899,856 + Xcc-8004.4036.1 0.65 +0.3 3,899,856 + Xcc-8004.4036.1 0.65 -0.8 3,899,856 + Xcc-8004.4036.1 0.65 -0.4 3,899,857 - Xcc-8004.4036.1 0.65 +0.1 3,899,857 - Xcc-8004.4036.1 0.65 +1.1 3,899,857 - Xcc-8004.4036.1 0.65 +0.8 3,899,857 - Xcc-8004.4036.1 0.65 +0.5 3,899,857 - Xcc-8004.4036.1 0.65 +0.4 3,899,857 - Xcc-8004.4036.1 0.65 -0.9 3,899,857 - Xcc-8004.4036.1 0.65 +0.7 3,899,857 - Xcc-8004.4036.1 0.65 -0.1 3,899,857 - Xcc-8004.4036.1 0.65 -1.4 3,899,857 - Xcc-8004.4036.1 0.65 +0.9 3,899,857 - Xcc-8004.4036.1 0.65 -0.6 3,899,960 + Xcc-8004.4036.1 0.78 -0.8 3,899,960 + Xcc-8004.4036.1 0.78 -0.8 3,899,960 + Xcc-8004.4036.1 0.78 -0.9 3,899,960 + Xcc-8004.4036.1 0.78 +0.8 3,899,961 - Xcc-8004.4036.1 0.79 +0.2 3,899,961 - Xcc-8004.4036.1 0.79 +1.1 3,900,017 + Xcc-8004.4036.1 0.86 +0.3 3,900,017 + Xcc-8004.4036.1 0.86 -0.9 3,900,017 + Xcc-8004.4036.1 0.86 -0.2 3,900,017 + Xcc-8004.4036.1 0.86 +0.3 3,900,017 + Xcc-8004.4036.1 0.86 -0.1 3,900,017 + Xcc-8004.4036.1 0.86 +0.3 3,900,017 + Xcc-8004.4036.1 0.86 +1.1 3,900,017 + Xcc-8004.4036.1 0.86 -0.3 3,900,018 - Xcc-8004.4036.1 0.86 -0.5 3,900,018 - Xcc-8004.4036.1 0.86 -0.3 3,900,018 - Xcc-8004.4036.1 0.86 +0.1 3,900,018 - Xcc-8004.4036.1 0.86 -2.2 3,900,018 - Xcc-8004.4036.1 0.86 -0.7 3,900,018 - Xcc-8004.4036.1 0.86 -0.0 3,900,018 - Xcc-8004.4036.1 0.86 -1.7 3,900,018 - Xcc-8004.4036.1 0.86 -0.1 3,900,082 + -0.3 3,900,082 + +0.4 3,900,234 + -0.4
Or see this region's nucleotide sequence