Experiment: MOKA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3802.1 and Xcc-8004.3803.1 are separated by 99 nucleotides Xcc-8004.3803.1 and Xcc-8004.3804.1 are separated by 135 nucleotides Xcc-8004.3804.1 and Xcc-8004.3805.1 are separated by 22 nucleotides
Xcc-8004.3802.1: Xcc-8004.3802.1 - NADH:flavin oxidoreductase/NADH oxidase, at 3,676,614 to 3,677,714
Xcc-8004.3802.1
Xcc-8004.3803.1: Xcc-8004.3803.1 - hypothetical protein, at 3,677,814 to 3,677,945
Xcc-8004.3803.1
Xcc-8004.3804.1: Xcc-8004.3804.1 - FOG: TPR repeat, at 3,678,081 to 3,680,405
Xcc-8004.3804.1
Xcc-8004.3805.1: Xcc-8004.3805.1 - probable heat shock protein (hsp90 family), at 3,680,428 to 3,682,446
Xcc-8004.3805.1
Position (kb) 3678
3679
3680
3681 Strain fitness (log2 ratio) -1
0
1
2 at 3677.160 kb on + strand, within Xcc-8004.3802.1 at 3677.185 kb on + strand, within Xcc-8004.3802.1 at 3677.185 kb on + strand, within Xcc-8004.3802.1 at 3677.186 kb on - strand, within Xcc-8004.3802.1 at 3677.186 kb on - strand, within Xcc-8004.3802.1 at 3677.619 kb on + strand at 3677.619 kb on + strand at 3677.620 kb on - strand at 3677.676 kb on + strand at 3677.677 kb on - strand at 3677.677 kb on - strand at 3677.677 kb on - strand at 3677.677 kb on - strand at 3677.831 kb on + strand, within Xcc-8004.3803.1 at 3677.831 kb on + strand, within Xcc-8004.3803.1 at 3678.027 kb on - strand at 3678.029 kb on + strand at 3678.082 kb on + strand at 3678.083 kb on - strand at 3678.083 kb on - strand at 3678.083 kb on - strand at 3678.110 kb on + strand at 3678.515 kb on - strand, within Xcc-8004.3804.1 at 3678.619 kb on + strand, within Xcc-8004.3804.1 at 3678.619 kb on + strand, within Xcc-8004.3804.1 at 3678.619 kb on + strand, within Xcc-8004.3804.1 at 3678.620 kb on - strand, within Xcc-8004.3804.1 at 3678.620 kb on - strand, within Xcc-8004.3804.1 at 3678.785 kb on - strand, within Xcc-8004.3804.1 at 3678.807 kb on + strand, within Xcc-8004.3804.1 at 3678.866 kb on - strand, within Xcc-8004.3804.1 at 3678.866 kb on - strand, within Xcc-8004.3804.1 at 3679.015 kb on + strand, within Xcc-8004.3804.1 at 3679.015 kb on + strand, within Xcc-8004.3804.1 at 3679.016 kb on - strand, within Xcc-8004.3804.1 at 3679.525 kb on + strand, within Xcc-8004.3804.1 at 3679.525 kb on + strand, within Xcc-8004.3804.1 at 3679.832 kb on + strand, within Xcc-8004.3804.1 at 3679.832 kb on + strand, within Xcc-8004.3804.1 at 3679.832 kb on + strand, within Xcc-8004.3804.1 at 3679.832 kb on + strand, within Xcc-8004.3804.1 at 3679.832 kb on + strand, within Xcc-8004.3804.1 at 3679.833 kb on - strand, within Xcc-8004.3804.1 at 3679.833 kb on - strand, within Xcc-8004.3804.1 at 3679.833 kb on - strand, within Xcc-8004.3804.1 at 3679.855 kb on + strand, within Xcc-8004.3804.1 at 3679.972 kb on + strand, within Xcc-8004.3804.1 at 3680.016 kb on + strand, within Xcc-8004.3804.1 at 3680.016 kb on + strand, within Xcc-8004.3804.1 at 3680.017 kb on - strand, within Xcc-8004.3804.1 at 3680.657 kb on + strand, within Xcc-8004.3805.1 at 3680.993 kb on + strand, within Xcc-8004.3805.1 at 3680.994 kb on - strand, within Xcc-8004.3805.1 at 3681.070 kb on + strand, within Xcc-8004.3805.1 at 3681.303 kb on - strand, within Xcc-8004.3805.1
Per-strain Table
Position Strand Gene LocusTag Fraction MOKA remove 3,677,160 + Xcc-8004.3802.1 0.50 -0.7 3,677,185 + Xcc-8004.3802.1 0.52 +0.7 3,677,185 + Xcc-8004.3802.1 0.52 -0.9 3,677,186 - Xcc-8004.3802.1 0.52 +0.2 3,677,186 - Xcc-8004.3802.1 0.52 -1.0 3,677,619 + +0.2 3,677,619 + -0.2 3,677,620 - -0.1 3,677,676 + +1.6 3,677,677 - +0.2 3,677,677 - +0.3 3,677,677 - +0.6 3,677,677 - +0.9 3,677,831 + Xcc-8004.3803.1 0.13 +0.2 3,677,831 + Xcc-8004.3803.1 0.13 +0.1 3,678,027 - -0.2 3,678,029 + -1.4 3,678,082 + +1.4 3,678,083 - +0.5 3,678,083 - +0.0 3,678,083 - -0.9 3,678,110 + +0.9 3,678,515 - Xcc-8004.3804.1 0.19 +0.2 3,678,619 + Xcc-8004.3804.1 0.23 -0.4 3,678,619 + Xcc-8004.3804.1 0.23 -0.2 3,678,619 + Xcc-8004.3804.1 0.23 -0.6 3,678,620 - Xcc-8004.3804.1 0.23 +0.5 3,678,620 - Xcc-8004.3804.1 0.23 +0.2 3,678,785 - Xcc-8004.3804.1 0.30 -0.2 3,678,807 + Xcc-8004.3804.1 0.31 -0.4 3,678,866 - Xcc-8004.3804.1 0.34 -0.0 3,678,866 - Xcc-8004.3804.1 0.34 +1.4 3,679,015 + Xcc-8004.3804.1 0.40 -0.4 3,679,015 + Xcc-8004.3804.1 0.40 +0.3 3,679,016 - Xcc-8004.3804.1 0.40 -1.6 3,679,525 + Xcc-8004.3804.1 0.62 +2.3 3,679,525 + Xcc-8004.3804.1 0.62 +0.6 3,679,832 + Xcc-8004.3804.1 0.75 +0.7 3,679,832 + Xcc-8004.3804.1 0.75 +0.1 3,679,832 + Xcc-8004.3804.1 0.75 +0.4 3,679,832 + Xcc-8004.3804.1 0.75 +0.3 3,679,832 + Xcc-8004.3804.1 0.75 +1.0 3,679,833 - Xcc-8004.3804.1 0.75 +0.6 3,679,833 - Xcc-8004.3804.1 0.75 +0.6 3,679,833 - Xcc-8004.3804.1 0.75 +1.2 3,679,855 + Xcc-8004.3804.1 0.76 +0.7 3,679,972 + Xcc-8004.3804.1 0.81 -0.8 3,680,016 + Xcc-8004.3804.1 0.83 -0.0 3,680,016 + Xcc-8004.3804.1 0.83 +0.0 3,680,017 - Xcc-8004.3804.1 0.83 +0.8 3,680,657 + Xcc-8004.3805.1 0.11 -0.6 3,680,993 + Xcc-8004.3805.1 0.28 +0.0 3,680,994 - Xcc-8004.3805.1 0.28 -0.4 3,681,070 + Xcc-8004.3805.1 0.32 -0.3 3,681,303 - Xcc-8004.3805.1 0.43 -0.2
Or see this region's nucleotide sequence