Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3676.1

Experiment: MOKA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3674.1 and Xcc-8004.3675.1 are separated by 0 nucleotidesXcc-8004.3675.1 and Xcc-8004.3676.1 are separated by 103 nucleotidesXcc-8004.3676.1 and Xcc-8004.3679.1 are separated by 165 nucleotides Xcc-8004.3674.1: Xcc-8004.3674.1 - FIG01209931: hypothetical protein, at 3,553,334 to 3,553,741 Xcc-8004.3674.1 Xcc-8004.3675.1: Xcc-8004.3675.1 - Signal peptidase I (EC 3.4.21.89), at 3,553,742 to 3,554,542 Xcc-8004.3675.1 Xcc-8004.3676.1: Xcc-8004.3676.1 - Translation elongation factor LepA, at 3,554,646 to 3,556,451 Xcc-8004.3676.1 Xcc-8004.3679.1: Xcc-8004.3679.1 - Serine protease precursor MucD/AlgY associated with sigma factor RpoE, at 3,556,617 to 3,558,194 Xcc-8004.3679.1 Position (kb) 3554 3555 3556 3557Strain fitness (log2 ratio) -2 -1 0 1at 3553.744 kb on - strandat 3554.652 kb on - strandat 3554.652 kb on - strandat 3554.652 kb on - strandat 3554.652 kb on - strandat 3554.777 kb on - strandat 3555.110 kb on - strand, within Xcc-8004.3676.1at 3555.137 kb on - strand, within Xcc-8004.3676.1at 3555.323 kb on - strand, within Xcc-8004.3676.1at 3555.323 kb on - strand, within Xcc-8004.3676.1at 3555.826 kb on - strand, within Xcc-8004.3676.1at 3555.826 kb on - strand, within Xcc-8004.3676.1at 3555.826 kb on - strand, within Xcc-8004.3676.1at 3555.830 kb on - strand, within Xcc-8004.3676.1at 3556.088 kb on - strand, within Xcc-8004.3676.1at 3556.088 kb on - strand, within Xcc-8004.3676.1at 3556.181 kb on - strand, within Xcc-8004.3676.1at 3556.496 kb on - strandat 3556.550 kb on + strandat 3556.551 kb on - strandat 3556.642 kb on + strandat 3556.642 kb on + strandat 3556.642 kb on + strandat 3556.642 kb on + strandat 3556.642 kb on + strandat 3556.642 kb on + strandat 3556.643 kb on - strandat 3556.643 kb on - strandat 3556.643 kb on - strandat 3556.643 kb on - strandat 3556.643 kb on - strandat 3556.643 kb on - strandat 3556.643 kb on - strandat 3556.643 kb on - strandat 3556.643 kb on - strandat 3556.643 kb on - strandat 3556.643 kb on - strandat 3556.643 kb on - strandat 3556.643 kb on - strandat 3556.696 kb on + strandat 3556.696 kb on + strandat 3556.697 kb on - strandat 3556.697 kb on - strandat 3556.776 kb on + strand, within Xcc-8004.3679.1at 3556.776 kb on + strand, within Xcc-8004.3679.1at 3556.776 kb on + strand, within Xcc-8004.3679.1at 3556.776 kb on + strand, within Xcc-8004.3679.1at 3556.777 kb on - strand, within Xcc-8004.3679.1at 3556.777 kb on - strand, within Xcc-8004.3679.1at 3556.777 kb on - strand, within Xcc-8004.3679.1at 3556.777 kb on - strand, within Xcc-8004.3679.1at 3556.791 kb on - strand, within Xcc-8004.3679.1at 3556.791 kb on - strand, within Xcc-8004.3679.1at 3556.791 kb on - strand, within Xcc-8004.3679.1at 3556.791 kb on - strand, within Xcc-8004.3679.1at 3556.932 kb on - strand, within Xcc-8004.3679.1at 3556.932 kb on - strand, within Xcc-8004.3679.1at 3557.229 kb on - strand, within Xcc-8004.3679.1at 3557.229 kb on - strand, within Xcc-8004.3679.1at 3557.344 kb on + strand, within Xcc-8004.3679.1at 3557.344 kb on + strand, within Xcc-8004.3679.1at 3557.344 kb on + strand, within Xcc-8004.3679.1at 3557.344 kb on + strand, within Xcc-8004.3679.1at 3557.345 kb on - strand, within Xcc-8004.3679.1at 3557.345 kb on - strand, within Xcc-8004.3679.1at 3557.345 kb on - strand, within Xcc-8004.3679.1at 3557.345 kb on - strand, within Xcc-8004.3679.1at 3557.345 kb on - strand, within Xcc-8004.3679.1at 3557.345 kb on - strand, within Xcc-8004.3679.1at 3557.345 kb on - strand, within Xcc-8004.3679.1at 3557.399 kb on + strand, within Xcc-8004.3679.1at 3557.399 kb on + strand, within Xcc-8004.3679.1at 3557.399 kb on + strand, within Xcc-8004.3679.1at 3557.400 kb on - strand, within Xcc-8004.3679.1at 3557.400 kb on - strand, within Xcc-8004.3679.1at 3557.400 kb on - strand, within Xcc-8004.3679.1at 3557.402 kb on + strand, within Xcc-8004.3679.1at 3557.402 kb on + strand, within Xcc-8004.3679.1at 3557.402 kb on + strand, within Xcc-8004.3679.1at 3557.402 kb on + strand, within Xcc-8004.3679.1at 3557.402 kb on + strand, within Xcc-8004.3679.1at 3557.403 kb on - strand, within Xcc-8004.3679.1at 3557.403 kb on - strand, within Xcc-8004.3679.1at 3557.403 kb on - strand, within Xcc-8004.3679.1at 3557.403 kb on - strand, within Xcc-8004.3679.1at 3557.403 kb on - strand, within Xcc-8004.3679.1at 3557.406 kb on + strand, within Xcc-8004.3679.1at 3557.406 kb on + strand, within Xcc-8004.3679.1at 3557.406 kb on + strand, within Xcc-8004.3679.1at 3557.407 kb on - strand, within Xcc-8004.3679.1at 3557.407 kb on - strand, within Xcc-8004.3679.1

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Per-strain Table

Position Strand Gene LocusTag Fraction MOKA
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3,553,744 - -0.0
3,554,652 - -0.0
3,554,652 - +0.4
3,554,652 - +0.4
3,554,652 - -0.4
3,554,777 - -0.1
3,555,110 - Xcc-8004.3676.1 0.26 +0.3
3,555,137 - Xcc-8004.3676.1 0.27 -0.4
3,555,323 - Xcc-8004.3676.1 0.37 +0.1
3,555,323 - Xcc-8004.3676.1 0.37 -0.5
3,555,826 - Xcc-8004.3676.1 0.65 -0.6
3,555,826 - Xcc-8004.3676.1 0.65 -0.1
3,555,826 - Xcc-8004.3676.1 0.65 -0.4
3,555,830 - Xcc-8004.3676.1 0.66 -0.8
3,556,088 - Xcc-8004.3676.1 0.80 -1.0
3,556,088 - Xcc-8004.3676.1 0.80 +0.8
3,556,181 - Xcc-8004.3676.1 0.85 -0.6
3,556,496 - -0.3
3,556,550 + +0.6
3,556,551 - -1.3
3,556,642 + -0.8
3,556,642 + -1.0
3,556,642 + +0.6
3,556,642 + -0.4
3,556,642 + +0.8
3,556,642 + +1.6
3,556,643 - -2.1
3,556,643 - +0.4
3,556,643 - -1.4
3,556,643 - +0.2
3,556,643 - -1.4
3,556,643 - -0.3
3,556,643 - +1.2
3,556,643 - -0.5
3,556,643 - -0.6
3,556,643 - +0.4
3,556,643 - +0.2
3,556,643 - +0.8
3,556,643 - -0.0
3,556,696 + -0.4
3,556,696 + -1.6
3,556,697 - -0.4
3,556,697 - +0.1
3,556,776 + Xcc-8004.3679.1 0.10 -0.8
3,556,776 + Xcc-8004.3679.1 0.10 -1.9
3,556,776 + Xcc-8004.3679.1 0.10 +0.0
3,556,776 + Xcc-8004.3679.1 0.10 -0.2
3,556,777 - Xcc-8004.3679.1 0.10 -0.3
3,556,777 - Xcc-8004.3679.1 0.10 -0.0
3,556,777 - Xcc-8004.3679.1 0.10 -1.0
3,556,777 - Xcc-8004.3679.1 0.10 -0.8
3,556,791 - Xcc-8004.3679.1 0.11 +0.2
3,556,791 - Xcc-8004.3679.1 0.11 -0.2
3,556,791 - Xcc-8004.3679.1 0.11 +0.5
3,556,791 - Xcc-8004.3679.1 0.11 +0.5
3,556,932 - Xcc-8004.3679.1 0.20 +0.4
3,556,932 - Xcc-8004.3679.1 0.20 -1.3
3,557,229 - Xcc-8004.3679.1 0.39 -0.0
3,557,229 - Xcc-8004.3679.1 0.39 +0.6
3,557,344 + Xcc-8004.3679.1 0.46 +0.1
3,557,344 + Xcc-8004.3679.1 0.46 +0.2
3,557,344 + Xcc-8004.3679.1 0.46 -0.6
3,557,344 + Xcc-8004.3679.1 0.46 -0.3
3,557,345 - Xcc-8004.3679.1 0.46 +0.6
3,557,345 - Xcc-8004.3679.1 0.46 -0.1
3,557,345 - Xcc-8004.3679.1 0.46 -0.3
3,557,345 - Xcc-8004.3679.1 0.46 -0.4
3,557,345 - Xcc-8004.3679.1 0.46 -0.2
3,557,345 - Xcc-8004.3679.1 0.46 -0.8
3,557,345 - Xcc-8004.3679.1 0.46 -0.4
3,557,399 + Xcc-8004.3679.1 0.50 -0.0
3,557,399 + Xcc-8004.3679.1 0.50 +0.9
3,557,399 + Xcc-8004.3679.1 0.50 +0.9
3,557,400 - Xcc-8004.3679.1 0.50 -0.2
3,557,400 - Xcc-8004.3679.1 0.50 +0.7
3,557,400 - Xcc-8004.3679.1 0.50 -0.0
3,557,402 + Xcc-8004.3679.1 0.50 -1.9
3,557,402 + Xcc-8004.3679.1 0.50 +0.5
3,557,402 + Xcc-8004.3679.1 0.50 -0.6
3,557,402 + Xcc-8004.3679.1 0.50 -0.4
3,557,402 + Xcc-8004.3679.1 0.50 -0.2
3,557,403 - Xcc-8004.3679.1 0.50 -0.4
3,557,403 - Xcc-8004.3679.1 0.50 -1.2
3,557,403 - Xcc-8004.3679.1 0.50 -0.6
3,557,403 - Xcc-8004.3679.1 0.50 -0.0
3,557,403 - Xcc-8004.3679.1 0.50 -0.8
3,557,406 + Xcc-8004.3679.1 0.50 +0.3
3,557,406 + Xcc-8004.3679.1 0.50 +0.8
3,557,406 + Xcc-8004.3679.1 0.50 +0.0
3,557,407 - Xcc-8004.3679.1 0.50 +0.7
3,557,407 - Xcc-8004.3679.1 0.50 -0.0

Or see this region's nucleotide sequence