Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3665.1

Experiment: MOKA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3664.1 and Xcc-8004.3665.1 are separated by 170 nucleotidesXcc-8004.3665.1 and Xcc-8004.3666.1 are separated by 28 nucleotidesXcc-8004.3666.1 and Xcc-8004.3667.1 are separated by 76 nucleotides Xcc-8004.3664.1: Xcc-8004.3664.1 - photolyase protein family, at 3,543,558 to 3,545,147 Xcc-8004.3664.1 Xcc-8004.3665.1: Xcc-8004.3665.1 - COG3380: Amine oxidase, flavin-containing, at 3,545,318 to 3,546,325 Xcc-8004.3665.1 Xcc-8004.3666.1: Xcc-8004.3666.1 - 2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain, at 3,546,354 to 3,547,055 Xcc-8004.3666.1 Xcc-8004.3667.1: Xcc-8004.3667.1 - FIG01210304: hypothetical protein, at 3,547,132 to 3,547,596 Xcc-8004.3667.1 Position (kb) 3545 3546 3547Strain fitness (log2 ratio) -1 0 1 2at 3544.334 kb on - strand, within Xcc-8004.3664.1at 3544.627 kb on + strand, within Xcc-8004.3664.1at 3544.674 kb on + strand, within Xcc-8004.3664.1at 3544.674 kb on + strand, within Xcc-8004.3664.1at 3544.674 kb on + strand, within Xcc-8004.3664.1at 3544.674 kb on + strand, within Xcc-8004.3664.1at 3544.790 kb on - strand, within Xcc-8004.3664.1at 3544.790 kb on - strand, within Xcc-8004.3664.1at 3544.810 kb on + strand, within Xcc-8004.3664.1at 3544.810 kb on + strand, within Xcc-8004.3664.1at 3544.810 kb on + strand, within Xcc-8004.3664.1at 3544.811 kb on - strand, within Xcc-8004.3664.1at 3544.879 kb on + strand, within Xcc-8004.3664.1at 3544.879 kb on + strand, within Xcc-8004.3664.1at 3544.880 kb on - strand, within Xcc-8004.3664.1at 3544.880 kb on - strand, within Xcc-8004.3664.1at 3544.880 kb on - strand, within Xcc-8004.3664.1at 3544.968 kb on + strand, within Xcc-8004.3664.1at 3544.968 kb on + strand, within Xcc-8004.3664.1at 3544.968 kb on + strand, within Xcc-8004.3664.1at 3544.968 kb on + strand, within Xcc-8004.3664.1at 3544.968 kb on + strand, within Xcc-8004.3664.1at 3544.968 kb on + strand, within Xcc-8004.3664.1at 3544.968 kb on + strand, within Xcc-8004.3664.1at 3544.969 kb on - strand, within Xcc-8004.3664.1at 3544.969 kb on - strand, within Xcc-8004.3664.1at 3544.969 kb on - strand, within Xcc-8004.3664.1at 3544.969 kb on - strand, within Xcc-8004.3664.1at 3544.969 kb on - strand, within Xcc-8004.3664.1at 3544.969 kb on - strand, within Xcc-8004.3664.1at 3544.969 kb on - strand, within Xcc-8004.3664.1at 3544.969 kb on - strand, within Xcc-8004.3664.1at 3544.972 kb on + strand, within Xcc-8004.3664.1at 3544.972 kb on + strand, within Xcc-8004.3664.1at 3544.972 kb on + strand, within Xcc-8004.3664.1at 3544.972 kb on + strand, within Xcc-8004.3664.1at 3544.972 kb on + strand, within Xcc-8004.3664.1at 3544.972 kb on + strand, within Xcc-8004.3664.1at 3544.973 kb on - strand, within Xcc-8004.3664.1at 3545.005 kb on + strandat 3545.005 kb on + strandat 3545.006 kb on - strandat 3545.006 kb on - strandat 3545.006 kb on - strandat 3545.006 kb on - strandat 3545.039 kb on + strandat 3545.039 kb on + strandat 3545.039 kb on + strandat 3545.039 kb on + strandat 3545.039 kb on + strandat 3545.039 kb on + strandat 3545.039 kb on + strandat 3545.039 kb on + strandat 3545.039 kb on + strandat 3545.039 kb on + strandat 3545.039 kb on + strandat 3545.039 kb on + strandat 3545.040 kb on - strandat 3545.040 kb on - strandat 3545.040 kb on - strandat 3545.040 kb on - strandat 3545.040 kb on - strandat 3545.040 kb on - strandat 3545.040 kb on - strandat 3545.040 kb on - strandat 3545.040 kb on - strandat 3545.040 kb on - strandat 3545.081 kb on + strandat 3545.081 kb on + strandat 3545.081 kb on + strandat 3545.276 kb on + strandat 3545.276 kb on + strandat 3545.276 kb on + strandat 3545.277 kb on - strandat 3545.341 kb on - strandat 3545.374 kb on + strandat 3545.374 kb on + strandat 3545.375 kb on - strandat 3545.731 kb on + strand, within Xcc-8004.3665.1at 3545.951 kb on + strand, within Xcc-8004.3665.1at 3546.141 kb on + strand, within Xcc-8004.3665.1at 3546.142 kb on - strand, within Xcc-8004.3665.1at 3546.502 kb on - strand, within Xcc-8004.3666.1at 3546.759 kb on + strand, within Xcc-8004.3666.1at 3546.759 kb on + strand, within Xcc-8004.3666.1at 3546.759 kb on + strand, within Xcc-8004.3666.1at 3546.759 kb on + strand, within Xcc-8004.3666.1at 3546.759 kb on + strand, within Xcc-8004.3666.1at 3546.759 kb on + strand, within Xcc-8004.3666.1at 3546.760 kb on - strand, within Xcc-8004.3666.1at 3546.837 kb on - strand, within Xcc-8004.3666.1at 3546.925 kb on + strand, within Xcc-8004.3666.1at 3546.926 kb on - strand, within Xcc-8004.3666.1at 3547.081 kb on + strandat 3547.081 kb on + strandat 3547.082 kb on - strandat 3547.181 kb on + strand, within Xcc-8004.3667.1at 3547.181 kb on + strand, within Xcc-8004.3667.1at 3547.181 kb on + strand, within Xcc-8004.3667.1at 3547.181 kb on + strand, within Xcc-8004.3667.1at 3547.181 kb on + strand, within Xcc-8004.3667.1at 3547.181 kb on + strand, within Xcc-8004.3667.1at 3547.181 kb on + strand, within Xcc-8004.3667.1at 3547.181 kb on + strand, within Xcc-8004.3667.1at 3547.182 kb on - strand, within Xcc-8004.3667.1at 3547.182 kb on - strand, within Xcc-8004.3667.1at 3547.182 kb on - strand, within Xcc-8004.3667.1at 3547.182 kb on - strand, within Xcc-8004.3667.1at 3547.182 kb on - strand, within Xcc-8004.3667.1at 3547.182 kb on - strand, within Xcc-8004.3667.1at 3547.182 kb on - strand, within Xcc-8004.3667.1at 3547.184 kb on + strand, within Xcc-8004.3667.1at 3547.184 kb on + strand, within Xcc-8004.3667.1at 3547.185 kb on - strand, within Xcc-8004.3667.1at 3547.185 kb on - strand, within Xcc-8004.3667.1at 3547.185 kb on - strand, within Xcc-8004.3667.1at 3547.185 kb on - strand, within Xcc-8004.3667.1at 3547.185 kb on - strand, within Xcc-8004.3667.1

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Per-strain Table

Position Strand Gene LocusTag Fraction MOKA
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3,544,334 - Xcc-8004.3664.1 0.49 +2.1
3,544,627 + Xcc-8004.3664.1 0.67 +0.1
3,544,674 + Xcc-8004.3664.1 0.70 +0.2
3,544,674 + Xcc-8004.3664.1 0.70 -1.1
3,544,674 + Xcc-8004.3664.1 0.70 -1.0
3,544,674 + Xcc-8004.3664.1 0.70 -0.5
3,544,790 - Xcc-8004.3664.1 0.77 +0.0
3,544,790 - Xcc-8004.3664.1 0.77 -0.5
3,544,810 + Xcc-8004.3664.1 0.79 -0.1
3,544,810 + Xcc-8004.3664.1 0.79 +0.2
3,544,810 + Xcc-8004.3664.1 0.79 +0.8
3,544,811 - Xcc-8004.3664.1 0.79 -0.6
3,544,879 + Xcc-8004.3664.1 0.83 +0.9
3,544,879 + Xcc-8004.3664.1 0.83 +0.2
3,544,880 - Xcc-8004.3664.1 0.83 -0.6
3,544,880 - Xcc-8004.3664.1 0.83 -0.7
3,544,880 - Xcc-8004.3664.1 0.83 +0.0
3,544,968 + Xcc-8004.3664.1 0.89 -1.5
3,544,968 + Xcc-8004.3664.1 0.89 +0.1
3,544,968 + Xcc-8004.3664.1 0.89 -0.2
3,544,968 + Xcc-8004.3664.1 0.89 +1.0
3,544,968 + Xcc-8004.3664.1 0.89 +0.2
3,544,968 + Xcc-8004.3664.1 0.89 +0.5
3,544,968 + Xcc-8004.3664.1 0.89 +0.5
3,544,969 - Xcc-8004.3664.1 0.89 -0.3
3,544,969 - Xcc-8004.3664.1 0.89 +0.5
3,544,969 - Xcc-8004.3664.1 0.89 -0.1
3,544,969 - Xcc-8004.3664.1 0.89 -0.1
3,544,969 - Xcc-8004.3664.1 0.89 -0.4
3,544,969 - Xcc-8004.3664.1 0.89 -0.5
3,544,969 - Xcc-8004.3664.1 0.89 -1.0
3,544,969 - Xcc-8004.3664.1 0.89 -0.7
3,544,972 + Xcc-8004.3664.1 0.89 -0.5
3,544,972 + Xcc-8004.3664.1 0.89 -1.0
3,544,972 + Xcc-8004.3664.1 0.89 +0.1
3,544,972 + Xcc-8004.3664.1 0.89 +0.5
3,544,972 + Xcc-8004.3664.1 0.89 -0.7
3,544,972 + Xcc-8004.3664.1 0.89 -0.5
3,544,973 - Xcc-8004.3664.1 0.89 -0.2
3,545,005 + -0.3
3,545,005 + -0.1
3,545,006 - -0.8
3,545,006 - -0.0
3,545,006 - -1.2
3,545,006 - -0.5
3,545,039 + -0.0
3,545,039 + +0.1
3,545,039 + -0.3
3,545,039 + -0.5
3,545,039 + +0.3
3,545,039 + +0.2
3,545,039 + -0.4
3,545,039 + -1.3
3,545,039 + +0.7
3,545,039 + +1.0
3,545,039 + +0.1
3,545,039 + -0.3
3,545,040 - -0.4
3,545,040 - +0.2
3,545,040 - +0.0
3,545,040 - +0.3
3,545,040 - -1.3
3,545,040 - +0.5
3,545,040 - +0.2
3,545,040 - +0.8
3,545,040 - -0.1
3,545,040 - -0.2
3,545,081 + -0.6
3,545,081 + +1.1
3,545,081 + -0.9
3,545,276 + -1.2
3,545,276 + +0.3
3,545,276 + +1.0
3,545,277 - -0.3
3,545,341 - +0.8
3,545,374 + +0.2
3,545,374 + +0.7
3,545,375 - -0.1
3,545,731 + Xcc-8004.3665.1 0.41 -1.0
3,545,951 + Xcc-8004.3665.1 0.63 -0.0
3,546,141 + Xcc-8004.3665.1 0.82 -1.1
3,546,142 - Xcc-8004.3665.1 0.82 -0.7
3,546,502 - Xcc-8004.3666.1 0.21 -0.5
3,546,759 + Xcc-8004.3666.1 0.58 -1.6
3,546,759 + Xcc-8004.3666.1 0.58 -0.0
3,546,759 + Xcc-8004.3666.1 0.58 -0.7
3,546,759 + Xcc-8004.3666.1 0.58 -1.5
3,546,759 + Xcc-8004.3666.1 0.58 -1.6
3,546,759 + Xcc-8004.3666.1 0.58 -1.6
3,546,760 - Xcc-8004.3666.1 0.58 -0.1
3,546,837 - Xcc-8004.3666.1 0.69 +0.5
3,546,925 + Xcc-8004.3666.1 0.81 -1.3
3,546,926 - Xcc-8004.3666.1 0.81 +0.2
3,547,081 + +0.3
3,547,081 + -0.1
3,547,082 - +0.0
3,547,181 + Xcc-8004.3667.1 0.11 +0.4
3,547,181 + Xcc-8004.3667.1 0.11 +0.1
3,547,181 + Xcc-8004.3667.1 0.11 +0.2
3,547,181 + Xcc-8004.3667.1 0.11 +0.1
3,547,181 + Xcc-8004.3667.1 0.11 +0.2
3,547,181 + Xcc-8004.3667.1 0.11 +0.6
3,547,181 + Xcc-8004.3667.1 0.11 +2.2
3,547,181 + Xcc-8004.3667.1 0.11 -0.0
3,547,182 - Xcc-8004.3667.1 0.11 +0.2
3,547,182 - Xcc-8004.3667.1 0.11 +0.6
3,547,182 - Xcc-8004.3667.1 0.11 -1.3
3,547,182 - Xcc-8004.3667.1 0.11 -1.3
3,547,182 - Xcc-8004.3667.1 0.11 -1.2
3,547,182 - Xcc-8004.3667.1 0.11 -0.3
3,547,182 - Xcc-8004.3667.1 0.11 +0.5
3,547,184 + Xcc-8004.3667.1 0.11 -0.3
3,547,184 + Xcc-8004.3667.1 0.11 -0.0
3,547,185 - Xcc-8004.3667.1 0.11 +0.1
3,547,185 - Xcc-8004.3667.1 0.11 +0.2
3,547,185 - Xcc-8004.3667.1 0.11 +0.0
3,547,185 - Xcc-8004.3667.1 0.11 -0.1
3,547,185 - Xcc-8004.3667.1 0.11 +0.3

Or see this region's nucleotide sequence