Experiment: MOKA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3524.1 and Xcc-8004.3525.1 are separated by 6 nucleotides Xcc-8004.3525.1 and Xcc-8004.3526.1 are separated by 10 nucleotides
Xcc-8004.3524.1: Xcc-8004.3524.1 - Inner membrane component of tripartite multidrug resistance system, at 3,410,978 to 3,412,558
Xcc-8004.3524.1
Xcc-8004.3525.1: Xcc-8004.3525.1 - Membrane fusion component of tripartite multidrug resistance system, at 3,412,565 to 3,413,758
Xcc-8004.3525.1
Xcc-8004.3526.1: Xcc-8004.3526.1 - Outer membrane component of tripartite multidrug resistance system, at 3,413,769 to 3,415,283
Xcc-8004.3526.1
Position (kb) 3412
3413
3414 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3411.616 kb on - strand, within Xcc-8004.3524.1 at 3411.616 kb on - strand, within Xcc-8004.3524.1 at 3411.909 kb on + strand, within Xcc-8004.3524.1 at 3411.909 kb on + strand, within Xcc-8004.3524.1 at 3411.909 kb on + strand, within Xcc-8004.3524.1 at 3411.909 kb on + strand, within Xcc-8004.3524.1 at 3412.023 kb on + strand, within Xcc-8004.3524.1 at 3412.023 kb on + strand, within Xcc-8004.3524.1 at 3412.023 kb on + strand, within Xcc-8004.3524.1 at 3412.023 kb on + strand, within Xcc-8004.3524.1 at 3412.024 kb on - strand, within Xcc-8004.3524.1 at 3412.024 kb on - strand, within Xcc-8004.3524.1 at 3412.024 kb on - strand, within Xcc-8004.3524.1 at 3412.126 kb on - strand, within Xcc-8004.3524.1 at 3412.158 kb on + strand, within Xcc-8004.3524.1 at 3412.158 kb on + strand, within Xcc-8004.3524.1 at 3412.159 kb on - strand, within Xcc-8004.3524.1 at 3412.159 kb on - strand, within Xcc-8004.3524.1 at 3412.159 kb on - strand, within Xcc-8004.3524.1 at 3412.467 kb on - strand at 3412.796 kb on - strand, within Xcc-8004.3525.1 at 3412.908 kb on + strand, within Xcc-8004.3525.1 at 3412.909 kb on - strand, within Xcc-8004.3525.1 at 3412.909 kb on - strand, within Xcc-8004.3525.1 at 3413.088 kb on + strand, within Xcc-8004.3525.1 at 3413.089 kb on - strand, within Xcc-8004.3525.1 at 3413.089 kb on - strand, within Xcc-8004.3525.1 at 3413.089 kb on - strand, within Xcc-8004.3525.1 at 3413.106 kb on - strand, within Xcc-8004.3525.1 at 3413.407 kb on - strand, within Xcc-8004.3525.1 at 3413.595 kb on + strand, within Xcc-8004.3525.1 at 3413.596 kb on - strand, within Xcc-8004.3525.1 at 3413.637 kb on + strand, within Xcc-8004.3525.1 at 3413.638 kb on - strand, within Xcc-8004.3525.1 at 3413.638 kb on - strand, within Xcc-8004.3525.1 at 3413.638 kb on - strand, within Xcc-8004.3525.1 at 3413.698 kb on + strand at 3413.699 kb on - strand at 3413.699 kb on - strand at 3413.740 kb on + strand at 3413.740 kb on + strand at 3413.741 kb on - strand at 3413.741 kb on - strand at 3413.831 kb on + strand at 3413.950 kb on + strand, within Xcc-8004.3526.1 at 3413.950 kb on + strand, within Xcc-8004.3526.1 at 3413.972 kb on - strand, within Xcc-8004.3526.1 at 3414.109 kb on + strand, within Xcc-8004.3526.1 at 3414.130 kb on + strand, within Xcc-8004.3526.1 at 3414.130 kb on + strand, within Xcc-8004.3526.1 at 3414.131 kb on - strand, within Xcc-8004.3526.1 at 3414.292 kb on + strand, within Xcc-8004.3526.1 at 3414.292 kb on + strand, within Xcc-8004.3526.1 at 3414.691 kb on + strand, within Xcc-8004.3526.1 at 3414.691 kb on + strand, within Xcc-8004.3526.1
Per-strain Table
Position Strand Gene LocusTag Fraction MOKA remove 3,411,616 - Xcc-8004.3524.1 0.40 +1.4 3,411,616 - Xcc-8004.3524.1 0.40 -1.0 3,411,909 + Xcc-8004.3524.1 0.59 -0.2 3,411,909 + Xcc-8004.3524.1 0.59 -0.4 3,411,909 + Xcc-8004.3524.1 0.59 -0.2 3,411,909 + Xcc-8004.3524.1 0.59 -1.0 3,412,023 + Xcc-8004.3524.1 0.66 -0.4 3,412,023 + Xcc-8004.3524.1 0.66 +0.2 3,412,023 + Xcc-8004.3524.1 0.66 -0.1 3,412,023 + Xcc-8004.3524.1 0.66 +0.5 3,412,024 - Xcc-8004.3524.1 0.66 +0.5 3,412,024 - Xcc-8004.3524.1 0.66 -0.3 3,412,024 - Xcc-8004.3524.1 0.66 +0.5 3,412,126 - Xcc-8004.3524.1 0.73 +0.5 3,412,158 + Xcc-8004.3524.1 0.75 -0.7 3,412,158 + Xcc-8004.3524.1 0.75 -0.0 3,412,159 - Xcc-8004.3524.1 0.75 -0.2 3,412,159 - Xcc-8004.3524.1 0.75 +0.8 3,412,159 - Xcc-8004.3524.1 0.75 -1.3 3,412,467 - +0.1 3,412,796 - Xcc-8004.3525.1 0.19 +0.3 3,412,908 + Xcc-8004.3525.1 0.29 +0.2 3,412,909 - Xcc-8004.3525.1 0.29 +0.8 3,412,909 - Xcc-8004.3525.1 0.29 +0.9 3,413,088 + Xcc-8004.3525.1 0.44 +0.7 3,413,089 - Xcc-8004.3525.1 0.44 +0.4 3,413,089 - Xcc-8004.3525.1 0.44 +0.2 3,413,089 - Xcc-8004.3525.1 0.44 +1.4 3,413,106 - Xcc-8004.3525.1 0.45 -0.7 3,413,407 - Xcc-8004.3525.1 0.71 +2.5 3,413,595 + Xcc-8004.3525.1 0.86 +0.1 3,413,596 - Xcc-8004.3525.1 0.86 -1.8 3,413,637 + Xcc-8004.3525.1 0.90 -0.5 3,413,638 - Xcc-8004.3525.1 0.90 +0.8 3,413,638 - Xcc-8004.3525.1 0.90 +0.2 3,413,638 - Xcc-8004.3525.1 0.90 +1.5 3,413,698 + -0.6 3,413,699 - +0.9 3,413,699 - -0.9 3,413,740 + -1.2 3,413,740 + +0.3 3,413,741 - -0.8 3,413,741 - +0.6 3,413,831 + +0.9 3,413,950 + Xcc-8004.3526.1 0.12 +0.6 3,413,950 + Xcc-8004.3526.1 0.12 -0.1 3,413,972 - Xcc-8004.3526.1 0.13 -1.0 3,414,109 + Xcc-8004.3526.1 0.22 -0.7 3,414,130 + Xcc-8004.3526.1 0.24 -1.4 3,414,130 + Xcc-8004.3526.1 0.24 -0.1 3,414,131 - Xcc-8004.3526.1 0.24 -0.7 3,414,292 + Xcc-8004.3526.1 0.35 -0.8 3,414,292 + Xcc-8004.3526.1 0.35 +0.9 3,414,691 + Xcc-8004.3526.1 0.61 -0.2 3,414,691 + Xcc-8004.3526.1 0.61 -0.7
Or see this region's nucleotide sequence