Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3517.1

Experiment: MOKA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3515.1 and Xcc-8004.3516.1 are separated by 207 nucleotidesXcc-8004.3516.1 and Xcc-8004.3517.1 are separated by 7 nucleotidesXcc-8004.3517.1 and Xcc-8004.3519.1 are separated by 165 nucleotides Xcc-8004.3515.1: Xcc-8004.3515.1 - putative; ORF located using Glimmer/Genemark, at 3,401,470 to 3,401,670 Xcc-8004.3515.1 Xcc-8004.3516.1: Xcc-8004.3516.1 - GlpG protein (membrane protein of glp regulon), at 3,401,878 to 3,402,486 Xcc-8004.3516.1 Xcc-8004.3517.1: Xcc-8004.3517.1 - Oligopeptide transporter, at 3,402,494 to 3,404,356 Xcc-8004.3517.1 Xcc-8004.3519.1: Xcc-8004.3519.1 - Gll2474 protein, at 3,404,522 to 3,406,291 Xcc-8004.3519.1 Position (kb) 3402 3403 3404 3405Strain fitness (log2 ratio) -2 -1 0 1 2at 3401.508 kb on + strand, within Xcc-8004.3515.1at 3401.508 kb on + strand, within Xcc-8004.3515.1at 3401.508 kb on + strand, within Xcc-8004.3515.1at 3401.508 kb on + strand, within Xcc-8004.3515.1at 3401.508 kb on + strand, within Xcc-8004.3515.1at 3401.508 kb on + strand, within Xcc-8004.3515.1at 3401.508 kb on + strand, within Xcc-8004.3515.1at 3401.508 kb on + strand, within Xcc-8004.3515.1at 3401.508 kb on + strand, within Xcc-8004.3515.1at 3401.508 kb on + strand, within Xcc-8004.3515.1at 3401.509 kb on - strand, within Xcc-8004.3515.1at 3401.509 kb on - strand, within Xcc-8004.3515.1at 3401.509 kb on - strand, within Xcc-8004.3515.1at 3401.509 kb on - strand, within Xcc-8004.3515.1at 3401.509 kb on - strand, within Xcc-8004.3515.1at 3401.509 kb on - strand, within Xcc-8004.3515.1at 3401.509 kb on - strand, within Xcc-8004.3515.1at 3401.509 kb on - strand, within Xcc-8004.3515.1at 3401.509 kb on - strand, within Xcc-8004.3515.1at 3401.593 kb on + strand, within Xcc-8004.3515.1at 3401.594 kb on - strand, within Xcc-8004.3515.1at 3401.614 kb on + strand, within Xcc-8004.3515.1at 3401.614 kb on + strand, within Xcc-8004.3515.1at 3401.723 kb on - strandat 3401.723 kb on - strandat 3401.723 kb on - strandat 3401.774 kb on + strandat 3401.774 kb on + strandat 3401.774 kb on + strandat 3401.775 kb on - strandat 3401.775 kb on - strandat 3402.038 kb on + strand, within Xcc-8004.3516.1at 3402.038 kb on + strand, within Xcc-8004.3516.1at 3402.038 kb on + strand, within Xcc-8004.3516.1at 3402.039 kb on - strand, within Xcc-8004.3516.1at 3402.039 kb on - strand, within Xcc-8004.3516.1at 3402.039 kb on - strand, within Xcc-8004.3516.1at 3402.039 kb on - strand, within Xcc-8004.3516.1at 3402.050 kb on + strand, within Xcc-8004.3516.1at 3402.050 kb on + strand, within Xcc-8004.3516.1at 3402.050 kb on + strand, within Xcc-8004.3516.1at 3402.050 kb on + strand, within Xcc-8004.3516.1at 3402.050 kb on + strand, within Xcc-8004.3516.1at 3402.050 kb on + strand, within Xcc-8004.3516.1at 3402.051 kb on - strand, within Xcc-8004.3516.1at 3402.051 kb on - strand, within Xcc-8004.3516.1at 3402.051 kb on - strand, within Xcc-8004.3516.1at 3402.051 kb on - strand, within Xcc-8004.3516.1at 3402.051 kb on - strand, within Xcc-8004.3516.1at 3402.051 kb on - strand, within Xcc-8004.3516.1at 3402.051 kb on - strand, within Xcc-8004.3516.1at 3402.051 kb on - strand, within Xcc-8004.3516.1at 3402.161 kb on + strand, within Xcc-8004.3516.1at 3402.161 kb on + strand, within Xcc-8004.3516.1at 3402.161 kb on + strand, within Xcc-8004.3516.1at 3402.162 kb on - strand, within Xcc-8004.3516.1at 3402.188 kb on + strand, within Xcc-8004.3516.1at 3402.188 kb on + strand, within Xcc-8004.3516.1at 3402.188 kb on + strand, within Xcc-8004.3516.1at 3402.189 kb on - strand, within Xcc-8004.3516.1at 3402.225 kb on - strand, within Xcc-8004.3516.1at 3402.225 kb on - strand, within Xcc-8004.3516.1at 3402.237 kb on - strand, within Xcc-8004.3516.1at 3402.237 kb on - strand, within Xcc-8004.3516.1at 3402.281 kb on + strand, within Xcc-8004.3516.1at 3402.281 kb on + strand, within Xcc-8004.3516.1at 3402.282 kb on - strand, within Xcc-8004.3516.1at 3402.282 kb on - strand, within Xcc-8004.3516.1at 3402.282 kb on - strand, within Xcc-8004.3516.1at 3402.351 kb on - strand, within Xcc-8004.3516.1at 3402.351 kb on - strand, within Xcc-8004.3516.1at 3402.351 kb on - strand, within Xcc-8004.3516.1at 3402.369 kb on - strand, within Xcc-8004.3516.1at 3402.369 kb on - strand, within Xcc-8004.3516.1at 3402.369 kb on - strand, within Xcc-8004.3516.1at 3402.480 kb on + strandat 3402.481 kb on - strandat 3402.507 kb on + strandat 3402.507 kb on + strandat 3402.507 kb on + strandat 3402.507 kb on + strandat 3402.508 kb on - strandat 3402.508 kb on - strandat 3402.508 kb on - strandat 3402.508 kb on - strandat 3402.508 kb on - strandat 3402.626 kb on - strandat 3402.703 kb on - strand, within Xcc-8004.3517.1at 3402.751 kb on - strand, within Xcc-8004.3517.1at 3402.751 kb on - strand, within Xcc-8004.3517.1at 3402.963 kb on + strand, within Xcc-8004.3517.1at 3402.964 kb on - strand, within Xcc-8004.3517.1at 3403.277 kb on + strand, within Xcc-8004.3517.1at 3403.277 kb on + strand, within Xcc-8004.3517.1at 3403.277 kb on + strand, within Xcc-8004.3517.1at 3403.278 kb on - strand, within Xcc-8004.3517.1at 3403.438 kb on - strand, within Xcc-8004.3517.1at 3403.758 kb on + strand, within Xcc-8004.3517.1at 3403.758 kb on + strand, within Xcc-8004.3517.1at 3403.759 kb on - strand, within Xcc-8004.3517.1at 3403.759 kb on - strand, within Xcc-8004.3517.1at 3403.759 kb on - strand, within Xcc-8004.3517.1at 3403.759 kb on - strand, within Xcc-8004.3517.1at 3403.759 kb on - strand, within Xcc-8004.3517.1at 3403.759 kb on - strand, within Xcc-8004.3517.1at 3403.788 kb on + strand, within Xcc-8004.3517.1at 3403.788 kb on + strand, within Xcc-8004.3517.1at 3403.788 kb on + strand, within Xcc-8004.3517.1at 3403.788 kb on + strand, within Xcc-8004.3517.1at 3403.789 kb on - strand, within Xcc-8004.3517.1at 3403.789 kb on - strand, within Xcc-8004.3517.1at 3403.789 kb on - strand, within Xcc-8004.3517.1at 3404.090 kb on + strand, within Xcc-8004.3517.1at 3404.281 kb on + strandat 3404.281 kb on + strandat 3404.281 kb on + strandat 3404.281 kb on + strandat 3404.281 kb on + strandat 3404.281 kb on + strandat 3404.281 kb on + strandat 3404.281 kb on + strandat 3404.282 kb on - strandat 3404.282 kb on - strandat 3404.282 kb on - strandat 3404.365 kb on + strandat 3404.365 kb on + strandat 3404.366 kb on - strandat 3404.427 kb on + strandat 3404.427 kb on + strandat 3404.427 kb on + strandat 3404.428 kb on - strandat 3404.428 kb on - strandat 3404.428 kb on - strandat 3404.485 kb on - strandat 3405.056 kb on + strand, within Xcc-8004.3519.1at 3405.056 kb on + strand, within Xcc-8004.3519.1at 3405.056 kb on + strand, within Xcc-8004.3519.1at 3405.057 kb on - strand, within Xcc-8004.3519.1at 3405.057 kb on - strand, within Xcc-8004.3519.1at 3405.125 kb on + strand, within Xcc-8004.3519.1at 3405.125 kb on + strand, within Xcc-8004.3519.1at 3405.125 kb on + strand, within Xcc-8004.3519.1at 3405.125 kb on + strand, within Xcc-8004.3519.1at 3405.125 kb on + strand, within Xcc-8004.3519.1at 3405.126 kb on - strand, within Xcc-8004.3519.1at 3405.126 kb on - strand, within Xcc-8004.3519.1at 3405.126 kb on - strand, within Xcc-8004.3519.1at 3405.126 kb on - strand, within Xcc-8004.3519.1at 3405.126 kb on - strand, within Xcc-8004.3519.1at 3405.126 kb on - strand, within Xcc-8004.3519.1at 3405.126 kb on - strand, within Xcc-8004.3519.1at 3405.126 kb on - strand, within Xcc-8004.3519.1at 3405.126 kb on - strand, within Xcc-8004.3519.1at 3405.287 kb on + strand, within Xcc-8004.3519.1at 3405.290 kb on + strand, within Xcc-8004.3519.1at 3405.291 kb on - strand, within Xcc-8004.3519.1at 3405.291 kb on - strand, within Xcc-8004.3519.1

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Per-strain Table

Position Strand Gene LocusTag Fraction MOKA
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3,401,508 + Xcc-8004.3515.1 0.19 -1.0
3,401,508 + Xcc-8004.3515.1 0.19 +0.1
3,401,508 + Xcc-8004.3515.1 0.19 -0.3
3,401,508 + Xcc-8004.3515.1 0.19 -1.9
3,401,508 + Xcc-8004.3515.1 0.19 -0.3
3,401,508 + Xcc-8004.3515.1 0.19 -0.2
3,401,508 + Xcc-8004.3515.1 0.19 +0.1
3,401,508 + Xcc-8004.3515.1 0.19 -0.5
3,401,508 + Xcc-8004.3515.1 0.19 +0.9
3,401,508 + Xcc-8004.3515.1 0.19 -1.8
3,401,509 - Xcc-8004.3515.1 0.19 -0.7
3,401,509 - Xcc-8004.3515.1 0.19 -1.0
3,401,509 - Xcc-8004.3515.1 0.19 -0.7
3,401,509 - Xcc-8004.3515.1 0.19 -0.2
3,401,509 - Xcc-8004.3515.1 0.19 -0.3
3,401,509 - Xcc-8004.3515.1 0.19 +1.3
3,401,509 - Xcc-8004.3515.1 0.19 -0.5
3,401,509 - Xcc-8004.3515.1 0.19 -0.6
3,401,509 - Xcc-8004.3515.1 0.19 +0.2
3,401,593 + Xcc-8004.3515.1 0.61 -0.1
3,401,594 - Xcc-8004.3515.1 0.62 -0.5
3,401,614 + Xcc-8004.3515.1 0.72 -1.3
3,401,614 + Xcc-8004.3515.1 0.72 +0.1
3,401,723 - -0.4
3,401,723 - +1.1
3,401,723 - -0.3
3,401,774 + -0.6
3,401,774 + +0.2
3,401,774 + -0.3
3,401,775 - +0.1
3,401,775 - +0.3
3,402,038 + Xcc-8004.3516.1 0.26 +0.3
3,402,038 + Xcc-8004.3516.1 0.26 -0.5
3,402,038 + Xcc-8004.3516.1 0.26 +0.3
3,402,039 - Xcc-8004.3516.1 0.26 -1.6
3,402,039 - Xcc-8004.3516.1 0.26 +0.7
3,402,039 - Xcc-8004.3516.1 0.26 +0.3
3,402,039 - Xcc-8004.3516.1 0.26 -0.5
3,402,050 + Xcc-8004.3516.1 0.28 -0.4
3,402,050 + Xcc-8004.3516.1 0.28 -2.3
3,402,050 + Xcc-8004.3516.1 0.28 +0.1
3,402,050 + Xcc-8004.3516.1 0.28 -0.7
3,402,050 + Xcc-8004.3516.1 0.28 +1.2
3,402,050 + Xcc-8004.3516.1 0.28 -0.2
3,402,051 - Xcc-8004.3516.1 0.28 +0.6
3,402,051 - Xcc-8004.3516.1 0.28 +0.3
3,402,051 - Xcc-8004.3516.1 0.28 -2.1
3,402,051 - Xcc-8004.3516.1 0.28 -1.3
3,402,051 - Xcc-8004.3516.1 0.28 +0.2
3,402,051 - Xcc-8004.3516.1 0.28 -0.1
3,402,051 - Xcc-8004.3516.1 0.28 +0.2
3,402,051 - Xcc-8004.3516.1 0.28 +0.5
3,402,161 + Xcc-8004.3516.1 0.46 +0.1
3,402,161 + Xcc-8004.3516.1 0.46 +0.8
3,402,161 + Xcc-8004.3516.1 0.46 -0.1
3,402,162 - Xcc-8004.3516.1 0.47 +0.9
3,402,188 + Xcc-8004.3516.1 0.51 +0.4
3,402,188 + Xcc-8004.3516.1 0.51 -0.8
3,402,188 + Xcc-8004.3516.1 0.51 +0.5
3,402,189 - Xcc-8004.3516.1 0.51 +0.8
3,402,225 - Xcc-8004.3516.1 0.57 +0.1
3,402,225 - Xcc-8004.3516.1 0.57 -1.0
3,402,237 - Xcc-8004.3516.1 0.59 -0.2
3,402,237 - Xcc-8004.3516.1 0.59 +0.5
3,402,281 + Xcc-8004.3516.1 0.66 -0.3
3,402,281 + Xcc-8004.3516.1 0.66 +0.9
3,402,282 - Xcc-8004.3516.1 0.66 -0.4
3,402,282 - Xcc-8004.3516.1 0.66 -0.0
3,402,282 - Xcc-8004.3516.1 0.66 +0.5
3,402,351 - Xcc-8004.3516.1 0.78 -0.2
3,402,351 - Xcc-8004.3516.1 0.78 +1.0
3,402,351 - Xcc-8004.3516.1 0.78 +0.0
3,402,369 - Xcc-8004.3516.1 0.81 -0.1
3,402,369 - Xcc-8004.3516.1 0.81 +0.2
3,402,369 - Xcc-8004.3516.1 0.81 +0.7
3,402,480 + -0.0
3,402,481 - -1.9
3,402,507 + -0.0
3,402,507 + +0.0
3,402,507 + +0.6
3,402,507 + -0.2
3,402,508 - +0.4
3,402,508 - +0.0
3,402,508 - -0.5
3,402,508 - -0.3
3,402,508 - +0.4
3,402,626 - -1.1
3,402,703 - Xcc-8004.3517.1 0.11 +0.3
3,402,751 - Xcc-8004.3517.1 0.14 -0.4
3,402,751 - Xcc-8004.3517.1 0.14 +0.5
3,402,963 + Xcc-8004.3517.1 0.25 +0.5
3,402,964 - Xcc-8004.3517.1 0.25 -1.6
3,403,277 + Xcc-8004.3517.1 0.42 -1.9
3,403,277 + Xcc-8004.3517.1 0.42 -0.4
3,403,277 + Xcc-8004.3517.1 0.42 -0.9
3,403,278 - Xcc-8004.3517.1 0.42 -0.8
3,403,438 - Xcc-8004.3517.1 0.51 +0.4
3,403,758 + Xcc-8004.3517.1 0.68 -0.8
3,403,758 + Xcc-8004.3517.1 0.68 +1.2
3,403,759 - Xcc-8004.3517.1 0.68 -0.6
3,403,759 - Xcc-8004.3517.1 0.68 -0.8
3,403,759 - Xcc-8004.3517.1 0.68 +0.2
3,403,759 - Xcc-8004.3517.1 0.68 -0.4
3,403,759 - Xcc-8004.3517.1 0.68 -0.7
3,403,759 - Xcc-8004.3517.1 0.68 -0.6
3,403,788 + Xcc-8004.3517.1 0.69 -0.5
3,403,788 + Xcc-8004.3517.1 0.69 -0.5
3,403,788 + Xcc-8004.3517.1 0.69 -1.7
3,403,788 + Xcc-8004.3517.1 0.69 -1.2
3,403,789 - Xcc-8004.3517.1 0.70 -0.5
3,403,789 - Xcc-8004.3517.1 0.70 +0.1
3,403,789 - Xcc-8004.3517.1 0.70 -1.5
3,404,090 + Xcc-8004.3517.1 0.86 -0.9
3,404,281 + +0.0
3,404,281 + -0.2
3,404,281 + +1.7
3,404,281 + +1.9
3,404,281 + +0.2
3,404,281 + -0.1
3,404,281 + +0.5
3,404,281 + -0.1
3,404,282 - +0.1
3,404,282 - -0.2
3,404,282 - -0.3
3,404,365 + -0.2
3,404,365 + -0.7
3,404,366 - -0.1
3,404,427 + -0.6
3,404,427 + -1.3
3,404,427 + +0.2
3,404,428 - +0.7
3,404,428 - -0.1
3,404,428 - +0.4
3,404,485 - -0.7
3,405,056 + Xcc-8004.3519.1 0.30 -0.2
3,405,056 + Xcc-8004.3519.1 0.30 -1.0
3,405,056 + Xcc-8004.3519.1 0.30 +0.3
3,405,057 - Xcc-8004.3519.1 0.30 -0.8
3,405,057 - Xcc-8004.3519.1 0.30 +0.1
3,405,125 + Xcc-8004.3519.1 0.34 +1.0
3,405,125 + Xcc-8004.3519.1 0.34 -0.5
3,405,125 + Xcc-8004.3519.1 0.34 +1.5
3,405,125 + Xcc-8004.3519.1 0.34 -0.1
3,405,125 + Xcc-8004.3519.1 0.34 -0.5
3,405,126 - Xcc-8004.3519.1 0.34 +1.4
3,405,126 - Xcc-8004.3519.1 0.34 +0.3
3,405,126 - Xcc-8004.3519.1 0.34 -0.4
3,405,126 - Xcc-8004.3519.1 0.34 +1.5
3,405,126 - Xcc-8004.3519.1 0.34 -0.6
3,405,126 - Xcc-8004.3519.1 0.34 +0.9
3,405,126 - Xcc-8004.3519.1 0.34 -0.2
3,405,126 - Xcc-8004.3519.1 0.34 -0.0
3,405,126 - Xcc-8004.3519.1 0.34 -0.8
3,405,287 + Xcc-8004.3519.1 0.43 -0.5
3,405,290 + Xcc-8004.3519.1 0.43 +0.3
3,405,291 - Xcc-8004.3519.1 0.43 -0.7
3,405,291 - Xcc-8004.3519.1 0.43 +0.3

Or see this region's nucleotide sequence