Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3159.1

Experiment: MOKA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOKA
3,075,698	+		Xcc-8004.3157.1	0.65	+0.2
3,075,698	+		Xcc-8004.3157.1	0.65	-0.1
3,075,698	+		Xcc-8004.3157.1	0.65	-0.6
3,075,698	+		Xcc-8004.3157.1	0.65	+0.5
3,075,698	+		Xcc-8004.3157.1	0.65	-0.4
3,075,699	-		Xcc-8004.3157.1	0.65	-0.5
3,075,699	-		Xcc-8004.3157.1	0.65	-0.9
3,075,763	+		Xcc-8004.3157.1	0.75	-0.1
3,075,764	-		Xcc-8004.3157.1	0.75	+0.3
3,075,764	-		Xcc-8004.3157.1	0.75	-0.7
3,075,764	-		Xcc-8004.3157.1	0.75	+1.2
3,075,764	-		Xcc-8004.3157.1	0.75	-0.1
3,075,764	-		Xcc-8004.3157.1	0.75	+0.1
3,075,764	-		Xcc-8004.3157.1	0.75	-0.8
3,075,764	-		Xcc-8004.3157.1	0.75	+0.2
3,075,764	-		Xcc-8004.3157.1	0.75	-1.0
3,075,764	-		Xcc-8004.3157.1	0.75	+0.9
3,075,966	+				+0.7
3,075,966	+				+0.8
3,075,966	+				+0.0
3,075,967	-				-0.6
3,076,035	+		Xcc-8004.3158.1	0.14	-1.0
3,076,036	-		Xcc-8004.3158.1	0.14	-2.2
3,076,036	-		Xcc-8004.3158.1	0.14	+0.0
3,076,036	-		Xcc-8004.3158.1	0.14	-1.3
3,076,143	-		Xcc-8004.3158.1	0.36	-0.5
3,076,221	+		Xcc-8004.3158.1	0.51	-0.2
3,076,221	+		Xcc-8004.3158.1	0.51	-0.8
3,076,221	+		Xcc-8004.3158.1	0.51	-0.5
3,076,221	+		Xcc-8004.3158.1	0.51	-0.4
3,076,221	+		Xcc-8004.3158.1	0.51	-0.9
3,076,221	+		Xcc-8004.3158.1	0.51	+1.3
3,076,221	+		Xcc-8004.3158.1	0.51	+0.6
3,076,222	-		Xcc-8004.3158.1	0.51	+0.5
3,076,222	-		Xcc-8004.3158.1	0.51	+0.1
3,076,222	-		Xcc-8004.3158.1	0.51	-1.5
3,076,222	-		Xcc-8004.3158.1	0.51	-0.5
3,076,222	-		Xcc-8004.3158.1	0.51	-1.9
3,076,222	-		Xcc-8004.3158.1	0.51	+2.6
3,076,246	-		Xcc-8004.3158.1	0.56	+0.6
3,076,480	+				-0.2
3,076,480	+				+0.5
3,076,480	+				+1.5
3,076,480	+				+1.1
3,076,480	+				+0.2
3,076,481	-				+0.3
3,076,481	-				-0.2
3,076,481	-				+0.1
3,076,481	-				-0.4
3,076,481	-				+1.5
3,076,481	-				+0.4
3,076,602	+				-1.4
3,076,602	+				-0.3
3,076,602	+				+0.3
3,076,602	+				+0.0
3,076,602	+				+0.5
3,076,602	+				-0.4
3,076,602	+				-1.5
3,076,603	-				+0.4
3,076,603	-				+0.5
3,076,603	-				-0.3
3,076,603	-				+0.3
3,076,606	+				-0.3
3,076,865	+		Xcc-8004.3159.1	0.34	-0.1
3,076,865	+		Xcc-8004.3159.1	0.34	-1.0
3,076,865	+		Xcc-8004.3159.1	0.34	-0.8
3,076,865	+		Xcc-8004.3159.1	0.34	-1.1
3,076,866	-		Xcc-8004.3159.1	0.34	-1.9
3,076,866	-		Xcc-8004.3159.1	0.34	+0.4
3,076,866	-		Xcc-8004.3159.1	0.34	-1.9
3,076,887	+		Xcc-8004.3159.1	0.36	-0.1
3,076,888	-		Xcc-8004.3159.1	0.36	+0.8
3,076,888	-		Xcc-8004.3159.1	0.36	-0.2
3,076,888	-		Xcc-8004.3159.1	0.36	-0.7
3,076,930	-		Xcc-8004.3159.1	0.40	-1.2
3,077,109	+		Xcc-8004.3159.1	0.58	-2.1
3,077,161	-		Xcc-8004.3159.1	0.63	-1.0
3,077,161	-		Xcc-8004.3159.1	0.63	+0.0
3,077,161	-		Xcc-8004.3159.1	0.63	+0.1
3,077,418	+		Xcc-8004.3159.1	0.89	-0.6
3,077,590	+				+0.5
3,077,590	+				+0.9
3,077,590	+				-1.0
3,077,591	-				+0.3
3,077,591	-				+0.2
3,077,591	-				-0.2
3,077,611	+				+0.1
3,077,678	+				+0.2
3,077,678	+				-1.2
3,077,678	+				-0.5
3,077,678	+				-1.9
3,077,678	+				-0.1
3,077,678	+				+0.7
3,077,679	-				+0.2
3,077,679	-				-1.9
3,077,679	-				+1.0
3,077,679	-				+0.6
3,077,679	-				-0.0
3,077,679	-				-0.4
3,077,679	-				-0.7
3,077,748	+				+0.2
3,077,748	+				-0.5
3,077,748	+				+0.2
3,077,748	+				+0.0
3,077,748	+				+0.1
3,077,748	+				-0.8
3,077,748	+				+0.2
3,077,748	+				-0.2
3,077,748	+				+1.3
3,077,748	+				+0.6
3,077,749	-				+0.4
3,077,749	-				+0.3
3,077,749	-				+1.6
3,077,749	-				-0.8
3,077,749	-				-1.6
3,077,749	-				+0.1
3,077,749	-				+1.1
3,077,880	-				-0.5
3,077,918	+				-1.3
3,077,919	-				+0.6
3,077,919	-				-0.0
3,077,919	-				-0.6
3,078,086	+				-0.9
3,078,086	+				+0.4
3,078,086	+				-0.9
3,078,087	-				-0.6
3,078,087	-				+0.3
3,078,107	+		Xcc-8004.3160.1	0.11	+0.4
3,078,107	+		Xcc-8004.3160.1	0.11	+0.3
3,078,107	+		Xcc-8004.3160.1	0.11	+0.1
3,078,107	+		Xcc-8004.3160.1	0.11	-1.0
3,078,107	+		Xcc-8004.3160.1	0.11	-0.5
3,078,107	+		Xcc-8004.3160.1	0.11	-1.0
3,078,107	+		Xcc-8004.3160.1	0.11	+0.1
3,078,107	+		Xcc-8004.3160.1	0.11	-0.3
3,078,107	+		Xcc-8004.3160.1	0.11	-0.6
3,078,108	-		Xcc-8004.3160.1	0.11	-0.3
3,078,108	-		Xcc-8004.3160.1	0.11	-0.7
3,078,108	-		Xcc-8004.3160.1	0.11	+0.4
3,078,108	-		Xcc-8004.3160.1	0.11	+0.5
3,078,108	-		Xcc-8004.3160.1	0.11	-0.5
3,078,108	-		Xcc-8004.3160.1	0.11	+1.8
3,078,109	+		Xcc-8004.3160.1	0.11	-0.4
3,078,109	+		Xcc-8004.3160.1	0.11	-0.3
3,078,109	+		Xcc-8004.3160.1	0.11	+0.5
3,078,109	+		Xcc-8004.3160.1	0.11	-0.8
3,078,110	-		Xcc-8004.3160.1	0.11	-2.1
3,078,110	-		Xcc-8004.3160.1	0.11	+0.4
3,078,110	-		Xcc-8004.3160.1	0.11	-0.7
3,078,294	-		Xcc-8004.3160.1	0.24	+0.2
3,078,294	-		Xcc-8004.3160.1	0.24	+0.1
3,078,400	+		Xcc-8004.3160.1	0.32	-1.2
3,078,401	-		Xcc-8004.3160.1	0.32	+1.5
3,078,401	-		Xcc-8004.3160.1	0.32	+0.3
3,078,401	-		Xcc-8004.3160.1	0.32	+0.7
3,078,404	+		Xcc-8004.3160.1	0.32	-0.8
3,078,404	+		Xcc-8004.3160.1	0.32	+0.3
3,078,404	+		Xcc-8004.3160.1	0.32	-0.0
3,078,404	+		Xcc-8004.3160.1	0.32	+0.2
3,078,404	+		Xcc-8004.3160.1	0.32	-0.6
3,078,404	+		Xcc-8004.3160.1	0.32	+0.5
3,078,404	+		Xcc-8004.3160.1	0.32	+0.2
3,078,404	+		Xcc-8004.3160.1	0.32	-0.7
3,078,405	-		Xcc-8004.3160.1	0.32	-0.1
3,078,405	-		Xcc-8004.3160.1	0.32	+0.1
3,078,405	-		Xcc-8004.3160.1	0.32	-0.3
3,078,405	-		Xcc-8004.3160.1	0.32	+0.2
3,078,405	-		Xcc-8004.3160.1	0.32	-0.4
3,078,405	-		Xcc-8004.3160.1	0.32	-0.1
3,078,405	-		Xcc-8004.3160.1	0.32	-1.7