Experiment: MOKA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.297.1 and Xcc-8004.298.1 are separated by 163 nucleotides Xcc-8004.298.1 and Xcc-8004.299.1 are separated by 2 nucleotides Xcc-8004.299.1 and Xcc-8004.300.1 are separated by 59 nucleotides
Xcc-8004.297.1: Xcc-8004.297.1 - FIG01210478: hypothetical protein, at 284,918 to 285,460
Xcc-8004.297.1
Xcc-8004.298.1: Xcc-8004.298.1 - Hypothetical protein YaeJ with similarity to translation release factor, at 285,624 to 285,986
Xcc-8004.298.1
Xcc-8004.299.1: Xcc-8004.299.1 - Acyltransferase, at 285,989 to 286,618
Xcc-8004.299.1
Xcc-8004.300.1: Xcc-8004.300.1 - Isoaspartyl aminopeptidase (EC 3.4.19.5) @ Asp-X dipeptidase, at 286,678 to 287,685
Xcc-8004.300.1
Position (kb) 285
286 Strain fitness (log2 ratio) -2
-1
0
1
2 at 284.983 kb on + strand, within Xcc-8004.297.1 at 285.078 kb on + strand, within Xcc-8004.297.1 at 285.078 kb on + strand, within Xcc-8004.297.1 at 285.126 kb on + strand, within Xcc-8004.297.1 at 285.126 kb on + strand, within Xcc-8004.297.1 at 285.126 kb on + strand, within Xcc-8004.297.1 at 285.127 kb on - strand, within Xcc-8004.297.1 at 285.127 kb on - strand, within Xcc-8004.297.1 at 285.127 kb on - strand, within Xcc-8004.297.1 at 285.127 kb on - strand, within Xcc-8004.297.1 at 285.127 kb on - strand, within Xcc-8004.297.1 at 285.127 kb on - strand, within Xcc-8004.297.1 at 285.127 kb on - strand, within Xcc-8004.297.1 at 285.127 kb on - strand, within Xcc-8004.297.1 at 285.138 kb on + strand, within Xcc-8004.297.1 at 285.138 kb on + strand, within Xcc-8004.297.1 at 285.138 kb on + strand, within Xcc-8004.297.1 at 285.138 kb on + strand, within Xcc-8004.297.1 at 285.138 kb on + strand, within Xcc-8004.297.1 at 285.139 kb on - strand, within Xcc-8004.297.1 at 285.139 kb on - strand, within Xcc-8004.297.1 at 285.139 kb on - strand, within Xcc-8004.297.1 at 285.139 kb on - strand, within Xcc-8004.297.1 at 285.139 kb on - strand, within Xcc-8004.297.1 at 285.139 kb on - strand, within Xcc-8004.297.1 at 285.139 kb on - strand, within Xcc-8004.297.1 at 285.497 kb on - strand at 285.542 kb on + strand at 285.916 kb on + strand, within Xcc-8004.298.1 at 285.916 kb on + strand, within Xcc-8004.298.1 at 285.917 kb on - strand, within Xcc-8004.298.1 at 285.944 kb on + strand, within Xcc-8004.298.1 at 285.944 kb on + strand, within Xcc-8004.298.1 at 285.984 kb on + strand at 285.984 kb on + strand at 285.985 kb on - strand at 285.985 kb on - strand at 285.985 kb on - strand at 285.985 kb on - strand at 286.388 kb on + strand, within Xcc-8004.299.1 at 286.388 kb on + strand, within Xcc-8004.299.1 at 286.388 kb on + strand, within Xcc-8004.299.1 at 286.389 kb on - strand, within Xcc-8004.299.1 at 286.487 kb on + strand, within Xcc-8004.299.1 at 286.581 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MOKA remove 284,983 + Xcc-8004.297.1 0.12 +0.5 285,078 + Xcc-8004.297.1 0.29 -0.3 285,078 + Xcc-8004.297.1 0.29 +0.1 285,126 + Xcc-8004.297.1 0.38 +0.6 285,126 + Xcc-8004.297.1 0.38 -0.5 285,126 + Xcc-8004.297.1 0.38 +0.9 285,127 - Xcc-8004.297.1 0.38 -0.8 285,127 - Xcc-8004.297.1 0.38 +0.7 285,127 - Xcc-8004.297.1 0.38 -1.1 285,127 - Xcc-8004.297.1 0.38 -0.8 285,127 - Xcc-8004.297.1 0.38 +0.1 285,127 - Xcc-8004.297.1 0.38 -0.3 285,127 - Xcc-8004.297.1 0.38 -0.1 285,127 - Xcc-8004.297.1 0.38 +2.0 285,138 + Xcc-8004.297.1 0.41 +0.2 285,138 + Xcc-8004.297.1 0.41 -1.1 285,138 + Xcc-8004.297.1 0.41 -0.3 285,138 + Xcc-8004.297.1 0.41 -0.1 285,138 + Xcc-8004.297.1 0.41 +0.3 285,139 - Xcc-8004.297.1 0.41 -0.9 285,139 - Xcc-8004.297.1 0.41 +1.2 285,139 - Xcc-8004.297.1 0.41 +0.3 285,139 - Xcc-8004.297.1 0.41 -1.3 285,139 - Xcc-8004.297.1 0.41 -0.1 285,139 - Xcc-8004.297.1 0.41 -0.5 285,139 - Xcc-8004.297.1 0.41 -0.3 285,497 - -0.9 285,542 + -1.4 285,916 + Xcc-8004.298.1 0.80 +0.4 285,916 + Xcc-8004.298.1 0.80 -0.8 285,917 - Xcc-8004.298.1 0.81 +0.3 285,944 + Xcc-8004.298.1 0.88 -0.9 285,944 + Xcc-8004.298.1 0.88 +0.6 285,984 + +0.7 285,984 + -1.0 285,985 - +0.7 285,985 - +0.2 285,985 - -0.3 285,985 - -0.0 286,388 + Xcc-8004.299.1 0.63 -2.2 286,388 + Xcc-8004.299.1 0.63 +1.0 286,388 + Xcc-8004.299.1 0.63 +0.2 286,389 - Xcc-8004.299.1 0.63 +0.7 286,487 + Xcc-8004.299.1 0.79 -1.2 286,581 - +0.2
Or see this region's nucleotide sequence