Experiment: MOKA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.2787.1 and Xcc-8004.2788.1 are separated by 11 nucleotides Xcc-8004.2788.1 and Xcc-8004.2789.1 overlap by 1 nucleotides
Xcc-8004.2787.1: Xcc-8004.2787.1 - Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-), at 2,700,002 to 2,701,189
Xcc-8004.2787.1
Xcc-8004.2788.1: Xcc-8004.2788.1 - Flagellar hook-associated protein FlgK, at 2,701,201 to 2,703,075
Xcc-8004.2788.1
Xcc-8004.2789.1: Xcc-8004.2789.1 - Flagellar hook-associated protein FlgL, at 2,703,075 to 2,704,280
Xcc-8004.2789.1
Position (kb) 2701
2702
2703
2704 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 2700.320 kb on + strand, within Xcc-8004.2787.1 at 2700.320 kb on + strand, within Xcc-8004.2787.1 at 2700.320 kb on + strand, within Xcc-8004.2787.1 at 2700.321 kb on - strand, within Xcc-8004.2787.1 at 2700.860 kb on + strand, within Xcc-8004.2787.1 at 2700.860 kb on + strand, within Xcc-8004.2787.1 at 2700.861 kb on - strand, within Xcc-8004.2787.1 at 2700.906 kb on - strand, within Xcc-8004.2787.1 at 2700.906 kb on - strand, within Xcc-8004.2787.1 at 2700.936 kb on - strand, within Xcc-8004.2787.1 at 2700.936 kb on - strand, within Xcc-8004.2787.1 at 2700.936 kb on - strand, within Xcc-8004.2787.1 at 2700.936 kb on - strand, within Xcc-8004.2787.1 at 2700.936 kb on - strand, within Xcc-8004.2787.1 at 2701.142 kb on + strand at 2701.143 kb on - strand at 2701.143 kb on - strand at 2701.143 kb on - strand at 2701.170 kb on + strand at 2701.171 kb on - strand at 2701.192 kb on + strand at 2701.192 kb on + strand at 2701.192 kb on + strand at 2701.192 kb on + strand at 2701.263 kb on + strand at 2701.287 kb on + strand at 2701.287 kb on + strand at 2701.288 kb on - strand at 2701.297 kb on + strand at 2701.298 kb on - strand at 2701.298 kb on - strand at 2701.298 kb on - strand at 2701.298 kb on - strand at 2701.348 kb on + strand at 2701.348 kb on + strand at 2701.348 kb on + strand at 2701.349 kb on - strand at 2701.492 kb on + strand, within Xcc-8004.2788.1 at 2701.493 kb on - strand, within Xcc-8004.2788.1 at 2701.493 kb on - strand, within Xcc-8004.2788.1 at 2701.493 kb on - strand, within Xcc-8004.2788.1 at 2701.500 kb on + strand, within Xcc-8004.2788.1 at 2701.501 kb on - strand, within Xcc-8004.2788.1 at 2701.506 kb on + strand, within Xcc-8004.2788.1 at 2701.819 kb on + strand, within Xcc-8004.2788.1 at 2701.819 kb on + strand, within Xcc-8004.2788.1 at 2701.820 kb on - strand, within Xcc-8004.2788.1 at 2701.820 kb on - strand, within Xcc-8004.2788.1 at 2701.936 kb on + strand, within Xcc-8004.2788.1 at 2702.137 kb on + strand, within Xcc-8004.2788.1 at 2702.137 kb on + strand, within Xcc-8004.2788.1 at 2702.137 kb on + strand, within Xcc-8004.2788.1 at 2702.137 kb on + strand, within Xcc-8004.2788.1 at 2702.137 kb on + strand, within Xcc-8004.2788.1 at 2702.138 kb on - strand, within Xcc-8004.2788.1 at 2702.138 kb on - strand, within Xcc-8004.2788.1 at 2702.138 kb on - strand, within Xcc-8004.2788.1 at 2702.138 kb on - strand, within Xcc-8004.2788.1 at 2702.304 kb on + strand, within Xcc-8004.2788.1 at 2702.305 kb on - strand, within Xcc-8004.2788.1 at 2702.623 kb on + strand, within Xcc-8004.2788.1 at 2702.623 kb on + strand, within Xcc-8004.2788.1 at 2702.623 kb on + strand, within Xcc-8004.2788.1 at 2702.623 kb on + strand, within Xcc-8004.2788.1 at 2702.624 kb on - strand, within Xcc-8004.2788.1 at 2702.624 kb on - strand, within Xcc-8004.2788.1 at 2702.624 kb on - strand, within Xcc-8004.2788.1 at 2702.653 kb on + strand, within Xcc-8004.2788.1 at 2702.654 kb on - strand, within Xcc-8004.2788.1 at 2702.890 kb on + strand at 2702.890 kb on + strand at 2702.891 kb on - strand at 2702.891 kb on - strand at 2702.891 kb on - strand at 2702.891 kb on - strand at 2702.891 kb on - strand at 2702.891 kb on - strand at 2703.004 kb on + strand at 2703.068 kb on + strand at 2703.069 kb on - strand at 2703.069 kb on - strand at 2703.069 kb on - strand at 2703.086 kb on + strand at 2703.086 kb on + strand at 2703.086 kb on + strand at 2703.086 kb on + strand at 2703.086 kb on + strand at 2703.086 kb on + strand at 2703.086 kb on + strand at 2703.086 kb on + strand at 2703.086 kb on + strand at 2703.087 kb on - strand at 2703.087 kb on - strand at 2703.087 kb on - strand at 2703.087 kb on - strand at 2703.087 kb on - strand at 2703.105 kb on + strand at 2703.105 kb on + strand at 2703.105 kb on + strand at 2703.105 kb on + strand at 2703.105 kb on + strand at 2703.105 kb on + strand at 2703.105 kb on + strand at 2703.105 kb on + strand at 2703.105 kb on + strand at 2703.105 kb on + strand at 2703.106 kb on - strand at 2703.106 kb on - strand at 2703.106 kb on - strand at 2703.374 kb on + strand, within Xcc-8004.2789.1 at 2703.374 kb on + strand, within Xcc-8004.2789.1 at 2703.375 kb on - strand, within Xcc-8004.2789.1 at 2703.375 kb on - strand, within Xcc-8004.2789.1 at 2703.402 kb on - strand, within Xcc-8004.2789.1 at 2703.402 kb on - strand, within Xcc-8004.2789.1 at 2703.480 kb on + strand, within Xcc-8004.2789.1 at 2703.481 kb on - strand, within Xcc-8004.2789.1 at 2703.543 kb on + strand, within Xcc-8004.2789.1 at 2703.544 kb on - strand, within Xcc-8004.2789.1 at 2703.544 kb on - strand, within Xcc-8004.2789.1 at 2703.747 kb on + strand, within Xcc-8004.2789.1 at 2703.747 kb on + strand, within Xcc-8004.2789.1 at 2703.747 kb on + strand, within Xcc-8004.2789.1 at 2703.747 kb on + strand, within Xcc-8004.2789.1 at 2703.747 kb on + strand, within Xcc-8004.2789.1 at 2703.747 kb on + strand, within Xcc-8004.2789.1 at 2703.747 kb on + strand, within Xcc-8004.2789.1 at 2703.747 kb on + strand, within Xcc-8004.2789.1 at 2703.747 kb on + strand, within Xcc-8004.2789.1 at 2703.747 kb on + strand, within Xcc-8004.2789.1 at 2703.747 kb on + strand, within Xcc-8004.2789.1 at 2703.747 kb on + strand, within Xcc-8004.2789.1 at 2703.747 kb on + strand, within Xcc-8004.2789.1 at 2703.747 kb on + strand, within Xcc-8004.2789.1 at 2703.748 kb on - strand, within Xcc-8004.2789.1 at 2703.748 kb on - strand, within Xcc-8004.2789.1 at 2703.748 kb on - strand, within Xcc-8004.2789.1 at 2703.748 kb on - strand, within Xcc-8004.2789.1 at 2703.748 kb on - strand, within Xcc-8004.2789.1 at 2703.748 kb on - strand, within Xcc-8004.2789.1 at 2703.748 kb on - strand, within Xcc-8004.2789.1 at 2703.748 kb on - strand, within Xcc-8004.2789.1 at 2703.748 kb on - strand, within Xcc-8004.2789.1 at 2703.748 kb on - strand, within Xcc-8004.2789.1 at 2703.748 kb on - strand, within Xcc-8004.2789.1 at 2703.748 kb on - strand, within Xcc-8004.2789.1 at 2703.748 kb on - strand, within Xcc-8004.2789.1 at 2703.748 kb on - strand, within Xcc-8004.2789.1 at 2703.748 kb on - strand, within Xcc-8004.2789.1 at 2703.748 kb on - strand, within Xcc-8004.2789.1 at 2703.748 kb on - strand, within Xcc-8004.2789.1 at 2703.748 kb on - strand, within Xcc-8004.2789.1 at 2703.748 kb on - strand, within Xcc-8004.2789.1 at 2703.750 kb on - strand, within Xcc-8004.2789.1 at 2703.750 kb on - strand, within Xcc-8004.2789.1 at 2703.750 kb on - strand, within Xcc-8004.2789.1 at 2703.750 kb on - strand, within Xcc-8004.2789.1 at 2703.750 kb on - strand, within Xcc-8004.2789.1 at 2703.777 kb on + strand, within Xcc-8004.2789.1 at 2703.777 kb on + strand, within Xcc-8004.2789.1 at 2703.777 kb on + strand, within Xcc-8004.2789.1 at 2703.777 kb on + strand, within Xcc-8004.2789.1 at 2703.778 kb on - strand, within Xcc-8004.2789.1 at 2703.778 kb on - strand, within Xcc-8004.2789.1 at 2703.778 kb on - strand, within Xcc-8004.2789.1 at 2703.778 kb on - strand, within Xcc-8004.2789.1 at 2703.778 kb on - strand, within Xcc-8004.2789.1 at 2703.778 kb on - strand, within Xcc-8004.2789.1 at 2703.778 kb on - strand, within Xcc-8004.2789.1 at 2703.818 kb on + strand, within Xcc-8004.2789.1 at 2703.819 kb on - strand, within Xcc-8004.2789.1 at 2703.822 kb on + strand, within Xcc-8004.2789.1 at 2703.822 kb on + strand, within Xcc-8004.2789.1 at 2703.822 kb on + strand, within Xcc-8004.2789.1 at 2703.822 kb on + strand, within Xcc-8004.2789.1 at 2703.822 kb on + strand, within Xcc-8004.2789.1 at 2703.822 kb on + strand, within Xcc-8004.2789.1 at 2703.822 kb on + strand, within Xcc-8004.2789.1 at 2703.822 kb on + strand, within Xcc-8004.2789.1 at 2703.822 kb on + strand, within Xcc-8004.2789.1 at 2703.822 kb on + strand, within Xcc-8004.2789.1 at 2703.822 kb on + strand, within Xcc-8004.2789.1 at 2703.822 kb on + strand, within Xcc-8004.2789.1 at 2703.822 kb on + strand, within Xcc-8004.2789.1 at 2703.822 kb on + strand, within Xcc-8004.2789.1 at 2703.822 kb on + strand, within Xcc-8004.2789.1 at 2703.822 kb on + strand, within Xcc-8004.2789.1 at 2703.823 kb on - strand, within Xcc-8004.2789.1 at 2703.823 kb on - strand, within Xcc-8004.2789.1 at 2703.823 kb on - strand, within Xcc-8004.2789.1 at 2703.823 kb on - strand, within Xcc-8004.2789.1 at 2703.823 kb on - strand, within Xcc-8004.2789.1 at 2703.823 kb on - strand, within Xcc-8004.2789.1 at 2703.823 kb on - strand, within Xcc-8004.2789.1 at 2703.823 kb on - strand, within Xcc-8004.2789.1 at 2703.823 kb on - strand, within Xcc-8004.2789.1 at 2703.823 kb on - strand, within Xcc-8004.2789.1 at 2703.823 kb on - strand, within Xcc-8004.2789.1 at 2703.824 kb on + strand, within Xcc-8004.2789.1 at 2703.825 kb on - strand, within Xcc-8004.2789.1 at 2703.825 kb on - strand, within Xcc-8004.2789.1 at 2703.825 kb on - strand, within Xcc-8004.2789.1 at 2703.825 kb on - strand, within Xcc-8004.2789.1
Per-strain Table
Position Strand Gene LocusTag Fraction MOKA remove 2,700,320 + Xcc-8004.2787.1 0.27 +0.6 2,700,320 + Xcc-8004.2787.1 0.27 +1.3 2,700,320 + Xcc-8004.2787.1 0.27 +0.1 2,700,321 - Xcc-8004.2787.1 0.27 -1.4 2,700,860 + Xcc-8004.2787.1 0.72 +0.5 2,700,860 + Xcc-8004.2787.1 0.72 +0.5 2,700,861 - Xcc-8004.2787.1 0.72 -0.7 2,700,906 - Xcc-8004.2787.1 0.76 -0.3 2,700,906 - Xcc-8004.2787.1 0.76 +1.5 2,700,936 - Xcc-8004.2787.1 0.79 -0.4 2,700,936 - Xcc-8004.2787.1 0.79 -0.2 2,700,936 - Xcc-8004.2787.1 0.79 +0.2 2,700,936 - Xcc-8004.2787.1 0.79 +2.3 2,700,936 - Xcc-8004.2787.1 0.79 -0.4 2,701,142 + -0.5 2,701,143 - +0.3 2,701,143 - +0.7 2,701,143 - +0.0 2,701,170 + +1.2 2,701,171 - +0.6 2,701,192 + -0.8 2,701,192 + -0.8 2,701,192 + +1.4 2,701,192 + -0.5 2,701,263 + -0.5 2,701,287 + -0.1 2,701,287 + +0.2 2,701,288 - -0.4 2,701,297 + -0.9 2,701,298 - -0.2 2,701,298 - +0.8 2,701,298 - -0.6 2,701,298 - -0.0 2,701,348 + -0.5 2,701,348 + -1.3 2,701,348 + -0.9 2,701,349 - -0.8 2,701,492 + Xcc-8004.2788.1 0.16 +0.8 2,701,493 - Xcc-8004.2788.1 0.16 -0.5 2,701,493 - Xcc-8004.2788.1 0.16 +0.7 2,701,493 - Xcc-8004.2788.1 0.16 +1.4 2,701,500 + Xcc-8004.2788.1 0.16 -0.1 2,701,501 - Xcc-8004.2788.1 0.16 +0.1 2,701,506 + Xcc-8004.2788.1 0.16 +1.1 2,701,819 + Xcc-8004.2788.1 0.33 -0.1 2,701,819 + Xcc-8004.2788.1 0.33 +0.3 2,701,820 - Xcc-8004.2788.1 0.33 +0.3 2,701,820 - Xcc-8004.2788.1 0.33 +1.1 2,701,936 + Xcc-8004.2788.1 0.39 +1.6 2,702,137 + Xcc-8004.2788.1 0.50 -3.0 2,702,137 + Xcc-8004.2788.1 0.50 -0.4 2,702,137 + Xcc-8004.2788.1 0.50 -0.1 2,702,137 + Xcc-8004.2788.1 0.50 -0.1 2,702,137 + Xcc-8004.2788.1 0.50 -0.1 2,702,138 - Xcc-8004.2788.1 0.50 -0.1 2,702,138 - Xcc-8004.2788.1 0.50 +0.9 2,702,138 - Xcc-8004.2788.1 0.50 +0.7 2,702,138 - Xcc-8004.2788.1 0.50 +1.2 2,702,304 + Xcc-8004.2788.1 0.59 +1.1 2,702,305 - Xcc-8004.2788.1 0.59 -0.2 2,702,623 + Xcc-8004.2788.1 0.76 +0.8 2,702,623 + Xcc-8004.2788.1 0.76 +0.1 2,702,623 + Xcc-8004.2788.1 0.76 +0.3 2,702,623 + Xcc-8004.2788.1 0.76 -0.3 2,702,624 - Xcc-8004.2788.1 0.76 -0.1 2,702,624 - Xcc-8004.2788.1 0.76 +0.3 2,702,624 - Xcc-8004.2788.1 0.76 -0.3 2,702,653 + Xcc-8004.2788.1 0.77 +0.1 2,702,654 - Xcc-8004.2788.1 0.77 +0.3 2,702,890 + -0.9 2,702,890 + -0.3 2,702,891 - +0.7 2,702,891 - -0.8 2,702,891 - +1.1 2,702,891 - -0.1 2,702,891 - +0.4 2,702,891 - +0.3 2,703,004 + -0.8 2,703,068 + -0.2 2,703,069 - +0.1 2,703,069 - -0.1 2,703,069 - -0.9 2,703,086 + -0.1 2,703,086 + +0.3 2,703,086 + +0.7 2,703,086 + -0.0 2,703,086 + -0.5 2,703,086 + -0.7 2,703,086 + -0.4 2,703,086 + -1.2 2,703,086 + -0.4 2,703,087 - -0.9 2,703,087 - +0.0 2,703,087 - -1.5 2,703,087 - -0.2 2,703,087 - -1.4 2,703,105 + +0.3 2,703,105 + -0.1 2,703,105 + +0.3 2,703,105 + -0.2 2,703,105 + +0.6 2,703,105 + -0.4 2,703,105 + +0.3 2,703,105 + +0.1 2,703,105 + -0.0 2,703,105 + +0.3 2,703,106 - +0.3 2,703,106 - -0.5 2,703,106 - +0.8 2,703,374 + Xcc-8004.2789.1 0.25 +0.6 2,703,374 + Xcc-8004.2789.1 0.25 +0.5 2,703,375 - Xcc-8004.2789.1 0.25 +0.3 2,703,375 - Xcc-8004.2789.1 0.25 -1.1 2,703,402 - Xcc-8004.2789.1 0.27 +0.3 2,703,402 - Xcc-8004.2789.1 0.27 -0.5 2,703,480 + Xcc-8004.2789.1 0.34 -0.3 2,703,481 - Xcc-8004.2789.1 0.34 -0.8 2,703,543 + Xcc-8004.2789.1 0.39 +0.5 2,703,544 - Xcc-8004.2789.1 0.39 -0.3 2,703,544 - Xcc-8004.2789.1 0.39 -0.8 2,703,747 + Xcc-8004.2789.1 0.56 +0.5 2,703,747 + Xcc-8004.2789.1 0.56 -0.7 2,703,747 + Xcc-8004.2789.1 0.56 -2.8 2,703,747 + Xcc-8004.2789.1 0.56 +0.8 2,703,747 + Xcc-8004.2789.1 0.56 +0.2 2,703,747 + Xcc-8004.2789.1 0.56 -1.2 2,703,747 + Xcc-8004.2789.1 0.56 -0.1 2,703,747 + Xcc-8004.2789.1 0.56 -0.6 2,703,747 + Xcc-8004.2789.1 0.56 +0.1 2,703,747 + Xcc-8004.2789.1 0.56 -1.3 2,703,747 + Xcc-8004.2789.1 0.56 -0.2 2,703,747 + Xcc-8004.2789.1 0.56 -1.8 2,703,747 + Xcc-8004.2789.1 0.56 -0.1 2,703,747 + Xcc-8004.2789.1 0.56 -0.1 2,703,748 - Xcc-8004.2789.1 0.56 -1.3 2,703,748 - Xcc-8004.2789.1 0.56 +0.1 2,703,748 - Xcc-8004.2789.1 0.56 +0.9 2,703,748 - Xcc-8004.2789.1 0.56 +0.5 2,703,748 - Xcc-8004.2789.1 0.56 -0.0 2,703,748 - Xcc-8004.2789.1 0.56 +0.1 2,703,748 - Xcc-8004.2789.1 0.56 +0.4 2,703,748 - Xcc-8004.2789.1 0.56 -0.2 2,703,748 - Xcc-8004.2789.1 0.56 +1.6 2,703,748 - Xcc-8004.2789.1 0.56 -1.2 2,703,748 - Xcc-8004.2789.1 0.56 -0.1 2,703,748 - Xcc-8004.2789.1 0.56 -0.2 2,703,748 - Xcc-8004.2789.1 0.56 -0.4 2,703,748 - Xcc-8004.2789.1 0.56 -0.9 2,703,748 - Xcc-8004.2789.1 0.56 +0.1 2,703,748 - Xcc-8004.2789.1 0.56 -0.1 2,703,748 - Xcc-8004.2789.1 0.56 -0.8 2,703,748 - Xcc-8004.2789.1 0.56 +0.2 2,703,748 - Xcc-8004.2789.1 0.56 +0.3 2,703,750 - Xcc-8004.2789.1 0.56 +0.3 2,703,750 - Xcc-8004.2789.1 0.56 -0.8 2,703,750 - Xcc-8004.2789.1 0.56 +0.4 2,703,750 - Xcc-8004.2789.1 0.56 -0.7 2,703,750 - Xcc-8004.2789.1 0.56 +0.1 2,703,777 + Xcc-8004.2789.1 0.58 +0.1 2,703,777 + Xcc-8004.2789.1 0.58 -0.8 2,703,777 + Xcc-8004.2789.1 0.58 -0.7 2,703,777 + Xcc-8004.2789.1 0.58 +0.6 2,703,778 - Xcc-8004.2789.1 0.58 +0.3 2,703,778 - Xcc-8004.2789.1 0.58 +1.2 2,703,778 - Xcc-8004.2789.1 0.58 +0.4 2,703,778 - Xcc-8004.2789.1 0.58 +0.0 2,703,778 - Xcc-8004.2789.1 0.58 +0.5 2,703,778 - Xcc-8004.2789.1 0.58 +0.3 2,703,778 - Xcc-8004.2789.1 0.58 +1.0 2,703,818 + Xcc-8004.2789.1 0.62 -0.4 2,703,819 - Xcc-8004.2789.1 0.62 -0.6 2,703,822 + Xcc-8004.2789.1 0.62 +1.0 2,703,822 + Xcc-8004.2789.1 0.62 -0.7 2,703,822 + Xcc-8004.2789.1 0.62 +0.4 2,703,822 + Xcc-8004.2789.1 0.62 -0.2 2,703,822 + Xcc-8004.2789.1 0.62 -2.3 2,703,822 + Xcc-8004.2789.1 0.62 +0.0 2,703,822 + Xcc-8004.2789.1 0.62 -0.2 2,703,822 + Xcc-8004.2789.1 0.62 -0.2 2,703,822 + Xcc-8004.2789.1 0.62 -0.9 2,703,822 + Xcc-8004.2789.1 0.62 +0.2 2,703,822 + Xcc-8004.2789.1 0.62 -0.6 2,703,822 + Xcc-8004.2789.1 0.62 -0.8 2,703,822 + Xcc-8004.2789.1 0.62 -0.1 2,703,822 + Xcc-8004.2789.1 0.62 +1.6 2,703,822 + Xcc-8004.2789.1 0.62 -0.4 2,703,822 + Xcc-8004.2789.1 0.62 +1.5 2,703,823 - Xcc-8004.2789.1 0.62 +0.7 2,703,823 - Xcc-8004.2789.1 0.62 -1.1 2,703,823 - Xcc-8004.2789.1 0.62 -0.6 2,703,823 - Xcc-8004.2789.1 0.62 +1.2 2,703,823 - Xcc-8004.2789.1 0.62 +1.6 2,703,823 - Xcc-8004.2789.1 0.62 -0.3 2,703,823 - Xcc-8004.2789.1 0.62 +0.4 2,703,823 - Xcc-8004.2789.1 0.62 -0.3 2,703,823 - Xcc-8004.2789.1 0.62 +0.1 2,703,823 - Xcc-8004.2789.1 0.62 -0.2 2,703,823 - Xcc-8004.2789.1 0.62 +0.3 2,703,824 + Xcc-8004.2789.1 0.62 -1.3 2,703,825 - Xcc-8004.2789.1 0.62 -1.3 2,703,825 - Xcc-8004.2789.1 0.62 -1.1 2,703,825 - Xcc-8004.2789.1 0.62 -1.0 2,703,825 - Xcc-8004.2789.1 0.62 +0.2
Or see this region's nucleotide sequence