Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2776.1

Experiment: MOKA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOKA
2,689,661	+				-0.3
2,689,661	+				+1.1
2,689,661	+				+1.5
2,689,662	-				+0.5
2,689,662	-				-0.1
2,689,662	-				-0.3
2,689,676	+				-0.5
2,689,676	+				-1.8
2,689,676	+				+0.6
2,689,677	-				-0.5
2,689,677	-				+0.3
2,689,677	-				-1.3
2,689,677	-				-0.7
2,689,677	-				+0.0
2,689,677	-				+1.0
2,689,677	-				-1.1
2,689,677	-				+0.6
2,689,678	+				-0.3
2,689,678	+				+0.8
2,689,678	+				-0.1
2,689,678	+				-0.5
2,689,678	+				-2.3
2,689,678	+				+0.3
2,689,678	+				-0.3
2,689,679	-				+0.3
2,689,679	-				-0.3
2,689,679	-				-1.3
2,689,679	-				+0.0
2,689,679	-				+0.2
2,689,679	-				-0.3
2,689,757	+		Xcc-8004.2773.1	0.10	+0.3
2,689,757	+		Xcc-8004.2773.1	0.10	-0.5
2,689,757	+		Xcc-8004.2773.1	0.10	-0.5
2,689,757	+		Xcc-8004.2773.1	0.10	+0.0
2,689,757	+		Xcc-8004.2773.1	0.10	-1.2
2,689,757	+		Xcc-8004.2773.1	0.10	+0.2
2,689,757	+		Xcc-8004.2773.1	0.10	-0.5
2,689,757	+		Xcc-8004.2773.1	0.10	-0.5
2,689,757	+		Xcc-8004.2773.1	0.10	+0.5
2,689,757	+		Xcc-8004.2773.1	0.10	+1.4
2,689,758	-		Xcc-8004.2773.1	0.10	-0.2
2,689,758	-		Xcc-8004.2773.1	0.10	+0.5
2,689,758	-		Xcc-8004.2773.1	0.10	+0.4
2,689,758	-		Xcc-8004.2773.1	0.10	+0.0
2,689,758	-		Xcc-8004.2773.1	0.10	-0.9
2,689,758	-		Xcc-8004.2773.1	0.10	+0.5
2,689,782	+		Xcc-8004.2773.1	0.18	+1.0
2,689,782	+		Xcc-8004.2773.1	0.18	+0.2
2,689,782	+		Xcc-8004.2773.1	0.18	-1.0
2,689,783	-		Xcc-8004.2773.1	0.18	+0.7
2,689,783	-		Xcc-8004.2773.1	0.18	-0.3
2,690,072	+				+0.2
2,690,072	+				+0.6
2,690,073	-				+0.1
2,690,398	-				+0.5
2,690,398	-				+0.3
2,690,407	-				+0.4
2,690,407	-				-0.3
2,690,438	-				-0.1
2,690,439	+				-0.0
2,690,439	+				+1.1
2,690,440	-				+0.4
2,690,440	-				-1.0
2,690,450	+				+0.0
2,690,450	+				-2.4
2,690,626	+		Xcc-8004.2776.1	0.27	-0.4
2,690,770	-		Xcc-8004.2776.1	0.50	+0.0
2,690,898	+		Xcc-8004.2776.1	0.70	+0.5
2,690,898	+		Xcc-8004.2776.1	0.70	-0.2
2,690,898	+		Xcc-8004.2776.1	0.70	+1.1
2,690,898	+		Xcc-8004.2776.1	0.70	+0.6
2,690,898	+		Xcc-8004.2776.1	0.70	-0.5
2,690,899	-		Xcc-8004.2776.1	0.70	+0.7
2,690,899	-		Xcc-8004.2776.1	0.70	+0.2
2,690,899	-		Xcc-8004.2776.1	0.70	-0.1
2,690,899	-		Xcc-8004.2776.1	0.70	+0.9
2,690,899	-		Xcc-8004.2776.1	0.70	+0.4
2,690,905	-		Xcc-8004.2776.1	0.71	-0.5
2,691,035	+				-0.7
2,691,035	+				+0.2
2,691,202	+				-0.5
2,691,202	+				-1.2
2,691,203	-				+0.5
2,691,203	-				-0.6
2,691,211	+				+0.5
2,691,211	+				-0.2
2,691,211	+				-0.1
2,691,211	+				+0.4
2,691,211	+				+0.1
2,691,211	+				+0.9
2,691,211	+				-1.6
2,691,211	+				-0.3
2,691,211	+				-2.7
2,691,211	+				+0.3
2,691,211	+				-1.4
2,691,211	+				-0.4
2,691,211	+				-0.3
2,691,211	+				+1.2
2,691,211	+				+0.1
2,691,211	+				-0.7
2,691,211	+				-0.4
2,691,211	+				-0.1
2,691,211	+				-0.3
2,691,211	+				+0.3
2,691,211	+				-0.2
2,691,211	+				+0.6
2,691,211	+				-0.4
2,691,211	+				-1.3
2,691,212	-				-0.5
2,691,212	-				-0.9
2,691,212	-				-0.5
2,691,212	-				+0.3
2,691,212	-				+1.2
2,691,212	-				+0.3
2,691,212	-				-0.0
2,691,212	-				+0.9
2,691,212	-				+0.4
2,691,212	-				+0.5
2,691,212	-				+0.2
2,691,212	-				-0.9
2,691,212	-				+0.7
2,691,212	-				-0.8
2,691,212	-				-0.0
2,691,212	-				+1.1
2,691,212	-				-1.2
2,691,212	-				+0.8
2,691,212	-				+0.1
2,691,212	-				+0.7
2,691,234	+				-0.8
2,691,234	+				+0.9
2,691,234	+				-0.5
2,691,234	+				-0.7
2,691,234	+				-0.9
2,691,234	+				-0.5
2,691,235	-				+1.1
2,691,235	-				-1.1
2,691,235	-				-0.4
2,691,235	-				+0.2
2,691,307	+				-1.3
2,691,307	+				-0.0
2,691,307	+				+0.0
2,691,308	-				+0.7
2,691,308	-				-0.9
2,691,308	-				+0.5
2,691,308	-				-0.9
2,691,308	-				-0.2
2,691,308	-				+0.2
2,691,308	-				-0.3
2,691,326	+				-0.0
2,691,326	+				+0.5
2,691,326	+				+0.5
2,691,326	+				-0.9
2,691,326	+				-0.5
2,691,326	+				+0.6
2,691,326	+				-0.7
2,691,327	-				+0.4
2,691,327	-				+0.7
2,691,327	-				-0.5
2,691,329	-				-1.2
2,691,562	+		Xcc-8004.2777.1	0.26	-0.6
2,691,562	+		Xcc-8004.2777.1	0.26	+0.7
2,691,562	+		Xcc-8004.2777.1	0.26	-0.4
2,691,563	-		Xcc-8004.2777.1	0.26	-0.5
2,691,563	-		Xcc-8004.2777.1	0.26	+0.8
2,691,563	-		Xcc-8004.2777.1	0.26	-1.5
2,691,563	-		Xcc-8004.2777.1	0.26	-0.6
2,691,605	+		Xcc-8004.2777.1	0.30	+0.1
2,691,618	+		Xcc-8004.2777.1	0.32	+0.8
2,691,618	+		Xcc-8004.2777.1	0.32	+0.1
2,691,689	+		Xcc-8004.2777.1	0.39	-1.3
2,691,689	+		Xcc-8004.2777.1	0.39	-0.5
2,691,689	+		Xcc-8004.2777.1	0.39	+0.0
2,691,689	+		Xcc-8004.2777.1	0.39	+1.1
2,691,690	-		Xcc-8004.2777.1	0.39	+0.1
2,691,704	+		Xcc-8004.2777.1	0.41	+1.2
2,691,704	+		Xcc-8004.2777.1	0.41	-0.2
2,691,704	+		Xcc-8004.2777.1	0.41	-1.2
2,691,704	+		Xcc-8004.2777.1	0.41	+0.1
2,691,704	+		Xcc-8004.2777.1	0.41	-0.9
2,691,705	-		Xcc-8004.2777.1	0.41	+0.8
2,691,705	-		Xcc-8004.2777.1	0.41	-0.7
2,691,705	-		Xcc-8004.2777.1	0.41	-0.4
2,691,705	-		Xcc-8004.2777.1	0.41	-0.6
2,691,705	-		Xcc-8004.2777.1	0.41	-1.0
2,691,705	-		Xcc-8004.2777.1	0.41	+0.5
2,691,705	-		Xcc-8004.2777.1	0.41	+0.8
2,691,741	+		Xcc-8004.2777.1	0.44	-0.1
2,691,741	+		Xcc-8004.2777.1	0.44	+0.1
2,691,741	+		Xcc-8004.2777.1	0.44	-0.2
2,691,741	+		Xcc-8004.2777.1	0.44	-0.3
2,691,741	+		Xcc-8004.2777.1	0.44	-0.3
2,691,741	+		Xcc-8004.2777.1	0.44	+0.5
2,691,741	+		Xcc-8004.2777.1	0.44	-0.3
2,691,741	+		Xcc-8004.2777.1	0.44	-1.0
2,691,741	+		Xcc-8004.2777.1	0.44	-1.2
2,691,741	+		Xcc-8004.2777.1	0.44	+1.8
2,691,741	+		Xcc-8004.2777.1	0.44	+0.3
2,691,742	-		Xcc-8004.2777.1	0.45	-0.4
2,691,742	-		Xcc-8004.2777.1	0.45	+0.5
2,691,742	-		Xcc-8004.2777.1	0.45	+0.5
2,691,742	-		Xcc-8004.2777.1	0.45	-1.0
2,691,742	-		Xcc-8004.2777.1	0.45	-0.9
2,691,742	-		Xcc-8004.2777.1	0.45	-0.5
2,691,742	-		Xcc-8004.2777.1	0.45	-0.8
2,691,742	-		Xcc-8004.2777.1	0.45	-0.3
2,691,742	-		Xcc-8004.2777.1	0.45	+0.1
2,691,742	-		Xcc-8004.2777.1	0.45	+0.3
2,691,742	-		Xcc-8004.2777.1	0.45	+0.2
2,691,742	-		Xcc-8004.2777.1	0.45	-0.8
2,692,038	+		Xcc-8004.2777.1	0.75	-0.2
2,692,038	+		Xcc-8004.2777.1	0.75	-0.6
2,692,083	+		Xcc-8004.2777.1	0.80	+0.7
2,692,084	-		Xcc-8004.2777.1	0.80	+0.2