Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2627.1

Experiment: MOKA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2626.1 and Xcc-8004.2627.1 overlap by 4 nucleotidesXcc-8004.2627.1 and Xcc-8004.2628.1 are separated by 3 nucleotidesXcc-8004.2628.1 and Xcc-8004.2629.1 are separated by 27 nucleotidesXcc-8004.2629.1 and Xcc-8004.2630.1 are separated by 129 nucleotides Xcc-8004.2626.1: Xcc-8004.2626.1 - Replication initiation protein, at 2,532,075 to 2,533,115 Xcc-8004.2626.1 Xcc-8004.2627.1: Xcc-8004.2627.1 - Phi-Lf prophage-derived helix-destabilizing protein, at 2,533,112 to 2,533,408 Xcc-8004.2627.1 Xcc-8004.2628.1: Xcc-8004.2628.1 - Minor coat protein, at 2,533,412 to 2,533,663 Xcc-8004.2628.1 Xcc-8004.2629.1: Xcc-8004.2629.1 - hypothetical protein, at 2,533,691 to 2,533,819 Xcc-8004.2629.1 Xcc-8004.2630.1: Xcc-8004.2630.1 - Adsorption protein, at 2,533,949 to 2,535,001 Xcc-8004.2630.1 Position (kb) 2533 2534Strain fitness (log2 ratio) -2 -1 0 1 2at 2532.117 kb on + strandat 2532.206 kb on - strand, within Xcc-8004.2626.1at 2532.391 kb on - strand, within Xcc-8004.2626.1at 2532.416 kb on + strand, within Xcc-8004.2626.1at 2532.451 kb on + strand, within Xcc-8004.2626.1at 2532.451 kb on + strand, within Xcc-8004.2626.1at 2532.564 kb on + strand, within Xcc-8004.2626.1at 2532.565 kb on - strand, within Xcc-8004.2626.1at 2532.607 kb on + strand, within Xcc-8004.2626.1at 2532.608 kb on - strand, within Xcc-8004.2626.1at 2532.611 kb on + strand, within Xcc-8004.2626.1at 2532.612 kb on - strand, within Xcc-8004.2626.1at 2532.642 kb on - strand, within Xcc-8004.2626.1at 2532.682 kb on - strand, within Xcc-8004.2626.1at 2532.685 kb on + strand, within Xcc-8004.2626.1at 2532.686 kb on - strand, within Xcc-8004.2626.1at 2532.835 kb on - strand, within Xcc-8004.2626.1at 2532.847 kb on - strand, within Xcc-8004.2626.1at 2532.847 kb on - strand, within Xcc-8004.2626.1at 2532.869 kb on + strand, within Xcc-8004.2626.1at 2533.102 kb on + strandat 2533.103 kb on - strandat 2533.103 kb on - strandat 2533.111 kb on + strandat 2533.171 kb on + strand, within Xcc-8004.2627.1at 2533.271 kb on + strand, within Xcc-8004.2627.1at 2533.272 kb on - strand, within Xcc-8004.2627.1at 2533.287 kb on - strand, within Xcc-8004.2627.1at 2534.003 kb on - strandat 2534.015 kb on - strandat 2534.015 kb on - strandat 2534.015 kb on - strandat 2534.068 kb on + strand, within Xcc-8004.2630.1at 2534.196 kb on - strand, within Xcc-8004.2630.1at 2534.196 kb on - strand, within Xcc-8004.2630.1at 2534.222 kb on + strand, within Xcc-8004.2630.1at 2534.256 kb on - strand, within Xcc-8004.2630.1at 2534.269 kb on + strand, within Xcc-8004.2630.1at 2534.270 kb on - strand, within Xcc-8004.2630.1at 2534.352 kb on - strand, within Xcc-8004.2630.1at 2534.352 kb on - strand, within Xcc-8004.2630.1at 2534.354 kb on + strand, within Xcc-8004.2630.1at 2534.354 kb on + strand, within Xcc-8004.2630.1at 2534.360 kb on + strand, within Xcc-8004.2630.1at 2534.361 kb on - strand, within Xcc-8004.2630.1at 2534.361 kb on - strand, within Xcc-8004.2630.1at 2534.390 kb on + strand, within Xcc-8004.2630.1at 2534.390 kb on + strand, within Xcc-8004.2630.1at 2534.396 kb on + strand, within Xcc-8004.2630.1at 2534.396 kb on + strand, within Xcc-8004.2630.1at 2534.397 kb on - strand, within Xcc-8004.2630.1at 2534.397 kb on - strand, within Xcc-8004.2630.1at 2534.397 kb on - strand, within Xcc-8004.2630.1at 2534.397 kb on - strand, within Xcc-8004.2630.1at 2534.397 kb on - strand, within Xcc-8004.2630.1

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Per-strain Table

Position Strand Gene LocusTag Fraction MOKA
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2,532,117 + +2.2
2,532,206 - Xcc-8004.2626.1 0.13 -2.3
2,532,391 - Xcc-8004.2626.1 0.30 +0.2
2,532,416 + Xcc-8004.2626.1 0.33 -0.5
2,532,451 + Xcc-8004.2626.1 0.36 -2.0
2,532,451 + Xcc-8004.2626.1 0.36 +0.4
2,532,564 + Xcc-8004.2626.1 0.47 -0.2
2,532,565 - Xcc-8004.2626.1 0.47 -0.1
2,532,607 + Xcc-8004.2626.1 0.51 -0.3
2,532,608 - Xcc-8004.2626.1 0.51 +1.2
2,532,611 + Xcc-8004.2626.1 0.51 +0.3
2,532,612 - Xcc-8004.2626.1 0.52 -0.1
2,532,642 - Xcc-8004.2626.1 0.54 -0.0
2,532,682 - Xcc-8004.2626.1 0.58 -0.4
2,532,685 + Xcc-8004.2626.1 0.59 +0.5
2,532,686 - Xcc-8004.2626.1 0.59 -0.5
2,532,835 - Xcc-8004.2626.1 0.73 -0.4
2,532,847 - Xcc-8004.2626.1 0.74 +0.7
2,532,847 - Xcc-8004.2626.1 0.74 -0.7
2,532,869 + Xcc-8004.2626.1 0.76 -1.0
2,533,102 + -1.0
2,533,103 - +1.8
2,533,103 - -1.0
2,533,111 + -0.4
2,533,171 + Xcc-8004.2627.1 0.20 -2.2
2,533,271 + Xcc-8004.2627.1 0.54 -0.5
2,533,272 - Xcc-8004.2627.1 0.54 +0.2
2,533,287 - Xcc-8004.2627.1 0.59 -0.3
2,534,003 - -0.3
2,534,015 - +1.5
2,534,015 - -1.5
2,534,015 - +0.9
2,534,068 + Xcc-8004.2630.1 0.11 +0.0
2,534,196 - Xcc-8004.2630.1 0.23 +0.7
2,534,196 - Xcc-8004.2630.1 0.23 -1.5
2,534,222 + Xcc-8004.2630.1 0.26 -0.7
2,534,256 - Xcc-8004.2630.1 0.29 -0.1
2,534,269 + Xcc-8004.2630.1 0.30 +0.7
2,534,270 - Xcc-8004.2630.1 0.30 -0.6
2,534,352 - Xcc-8004.2630.1 0.38 -0.4
2,534,352 - Xcc-8004.2630.1 0.38 -0.4
2,534,354 + Xcc-8004.2630.1 0.38 -0.8
2,534,354 + Xcc-8004.2630.1 0.38 +0.8
2,534,360 + Xcc-8004.2630.1 0.39 -0.5
2,534,361 - Xcc-8004.2630.1 0.39 +0.3
2,534,361 - Xcc-8004.2630.1 0.39 +0.8
2,534,390 + Xcc-8004.2630.1 0.42 -2.2
2,534,390 + Xcc-8004.2630.1 0.42 -0.6
2,534,396 + Xcc-8004.2630.1 0.42 -1.2
2,534,396 + Xcc-8004.2630.1 0.42 -0.4
2,534,397 - Xcc-8004.2630.1 0.43 -1.0
2,534,397 - Xcc-8004.2630.1 0.43 -0.0
2,534,397 - Xcc-8004.2630.1 0.43 +0.1
2,534,397 - Xcc-8004.2630.1 0.43 +0.3
2,534,397 - Xcc-8004.2630.1 0.43 -0.4

Or see this region's nucleotide sequence