Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2552.1

Experiment: MOKA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOKA
2,466,095	+		Xcc-8004.2550.1	0.43	-1.1
2,466,096	-		Xcc-8004.2550.1	0.43	-0.3
2,466,101	+		Xcc-8004.2550.1	0.44	-0.7
2,466,101	+		Xcc-8004.2550.1	0.44	+0.3
2,466,102	-		Xcc-8004.2550.1	0.44	-0.6
2,466,102	-		Xcc-8004.2550.1	0.44	+0.1
2,466,198	-		Xcc-8004.2550.1	0.54	-2.5
2,466,332	+		Xcc-8004.2550.1	0.68	+0.3
2,466,332	+		Xcc-8004.2550.1	0.68	+0.5
2,466,332	+		Xcc-8004.2550.1	0.68	-0.4
2,466,332	+		Xcc-8004.2550.1	0.68	-1.8
2,466,333	-		Xcc-8004.2550.1	0.69	+0.2
2,466,333	-		Xcc-8004.2550.1	0.69	+0.7
2,466,333	-		Xcc-8004.2550.1	0.69	-0.8
2,466,333	-		Xcc-8004.2550.1	0.69	-0.2
2,466,333	-		Xcc-8004.2550.1	0.69	+0.3
2,466,346	+		Xcc-8004.2550.1	0.70	+0.1
2,466,346	+		Xcc-8004.2550.1	0.70	-0.2
2,466,347	-		Xcc-8004.2550.1	0.70	-0.7
2,466,347	-		Xcc-8004.2550.1	0.70	-0.3
2,466,404	+		Xcc-8004.2550.1	0.76	+0.3
2,466,404	+		Xcc-8004.2550.1	0.76	-0.5
2,466,404	+		Xcc-8004.2550.1	0.76	-1.0
2,466,404	+		Xcc-8004.2550.1	0.76	-0.0
2,466,404	+		Xcc-8004.2550.1	0.76	-0.1
2,466,404	+		Xcc-8004.2550.1	0.76	-1.5
2,466,405	-		Xcc-8004.2550.1	0.76	-0.3
2,466,405	-		Xcc-8004.2550.1	0.76	+0.5
2,466,456	-		Xcc-8004.2550.1	0.82	-0.1
2,466,461	+		Xcc-8004.2550.1	0.82	+0.2
2,466,461	+		Xcc-8004.2550.1	0.82	-0.5
2,466,544	+				+0.1
2,466,545	-				+0.1
2,466,685	-				+0.3
2,466,703	+				+0.0
2,466,703	+				-1.1
2,466,704	-				+0.5
2,466,704	-				-0.6
2,466,946	+				+0.0
2,466,946	+				-0.2
2,467,130	+				-0.1
2,467,131	-				+0.1
2,467,131	-				+0.8
2,467,131	-				+0.5
2,467,131	-				+0.4
2,467,131	-				-1.2
2,467,133	-				-0.2
2,467,270	-		Xcc-8004.2552.1	0.76	+0.2
2,467,293	+		Xcc-8004.2552.1	0.85	-0.0
2,467,293	+		Xcc-8004.2552.1	0.85	-0.1
2,467,294	-		Xcc-8004.2552.1	0.86	+1.4
2,467,338	+				-0.6
2,467,338	+				-0.3
2,467,339	-				+1.1
2,467,339	-				-0.2
2,467,408	-				-0.3
2,467,452	+				+0.2
2,467,452	+				-0.1
2,467,452	+				+0.2
2,467,452	+				-0.9
2,467,453	-				+0.5
2,467,553	+				+1.4
2,467,553	+				+1.0
2,467,553	+				-0.9
2,467,554	-				-0.8
2,467,563	+				+0.4
2,467,563	+				-0.1
2,467,564	-				-0.3
2,467,566	+				-0.1
2,467,566	+				+0.3
2,467,566	+				+0.1
2,467,566	+				+0.1
2,467,566	+				+1.5
2,467,566	+				+0.9
2,467,613	+				+1.5
2,467,613	+				-0.1
2,467,614	-				+0.0
2,467,655	+				-0.4
2,467,666	+				-0.7
2,467,668	+				+1.4
2,467,668	+				+0.3
2,467,668	+				+0.6
2,467,668	+				-0.5
2,467,668	+				-1.2
2,467,669	-				+1.0
2,467,669	-				-0.0
2,467,673	+				-0.8
2,467,674	-				+0.4
2,467,703	+				-0.3
2,467,724	+				-0.1
2,467,738	-				+0.0
2,467,742	+				+0.1
2,467,743	-				-0.3
2,467,743	-				+0.9
2,467,764	+				-0.1
2,467,803	+				-0.9
2,467,804	-				+0.1
2,467,804	-				-0.4
2,467,804	-				-1.2
2,467,836	+		Xcc-8004.2554.1	0.12	+0.0
2,467,851	+		Xcc-8004.2554.1	0.15	-1.2
2,467,852	-		Xcc-8004.2554.1	0.15	+0.1
2,467,870	+		Xcc-8004.2554.1	0.18	-1.2
2,467,871	-		Xcc-8004.2554.1	0.18	+0.4
2,467,944	+		Xcc-8004.2554.1	0.30	-0.2
2,467,944	+		Xcc-8004.2554.1	0.30	-0.9
2,467,944	+		Xcc-8004.2554.1	0.30	+0.6
2,467,944	+		Xcc-8004.2554.1	0.30	+0.9
2,467,944	+		Xcc-8004.2554.1	0.30	+0.5
2,467,944	+		Xcc-8004.2554.1	0.30	+0.1
2,467,945	-		Xcc-8004.2554.1	0.30	-0.1
2,467,945	-		Xcc-8004.2554.1	0.30	-0.2
2,467,945	-		Xcc-8004.2554.1	0.30	+1.0
2,467,945	-		Xcc-8004.2554.1	0.30	+0.3
2,467,945	-		Xcc-8004.2554.1	0.30	-2.8
2,467,945	-		Xcc-8004.2554.1	0.30	-1.3
2,468,004	+		Xcc-8004.2554.1	0.39	+0.4
2,468,005	-		Xcc-8004.2554.1	0.39	-0.4
2,468,071	-		Xcc-8004.2554.1	0.50	-1.0
2,468,076	+		Xcc-8004.2554.1	0.51	-0.7
2,468,149	+		Xcc-8004.2554.1	0.62	+0.3
2,468,149	+		Xcc-8004.2554.1	0.62	+0.2
2,468,150	-		Xcc-8004.2554.1	0.62	-0.3
2,468,150	-		Xcc-8004.2554.1	0.62	-0.7
2,468,150	-		Xcc-8004.2554.1	0.62	-0.3
2,468,150	-		Xcc-8004.2554.1	0.62	-0.7
2,468,150	-		Xcc-8004.2554.1	0.62	-0.2
2,468,201	+		Xcc-8004.2554.1	0.70	-0.5
2,468,201	+		Xcc-8004.2554.1	0.70	-1.1
2,468,201	+		Xcc-8004.2554.1	0.70	+0.1
2,468,221	+		Xcc-8004.2554.1	0.74	-1.4
2,468,222	-		Xcc-8004.2554.1	0.74	+0.5
2,468,227	+		Xcc-8004.2554.1	0.75	-0.9
2,468,227	+		Xcc-8004.2554.1	0.75	+0.2
2,468,228	-		Xcc-8004.2554.1	0.75	-0.1
2,468,228	-		Xcc-8004.2554.1	0.75	-1.0
2,468,281	+		Xcc-8004.2554.1	0.83	-0.3
2,468,281	+		Xcc-8004.2554.1	0.83	-1.2
2,468,281	+		Xcc-8004.2554.1	0.83	+0.4
2,468,282	-		Xcc-8004.2554.1	0.83	+0.8
2,468,283	+		Xcc-8004.2554.1	0.84	+0.3
2,468,315	+		Xcc-8004.2554.1	0.89	-0.5
2,468,315	+		Xcc-8004.2554.1	0.89	-0.9
2,468,315	+		Xcc-8004.2554.1	0.89	+0.4
2,468,315	+		Xcc-8004.2554.1	0.89	+0.4
2,468,315	+		Xcc-8004.2554.1	0.89	+0.0
2,468,315	+		Xcc-8004.2554.1	0.89	-0.5
2,468,315	+		Xcc-8004.2554.1	0.89	-0.5
2,468,315	+		Xcc-8004.2554.1	0.89	+0.1
2,468,315	+		Xcc-8004.2554.1	0.89	+0.7
2,468,315	+		Xcc-8004.2554.1	0.89	+0.1
2,468,315	+		Xcc-8004.2554.1	0.89	+0.9
2,468,315	+		Xcc-8004.2554.1	0.89	+1.1
2,468,316	-		Xcc-8004.2554.1	0.89	+0.2
2,468,316	-		Xcc-8004.2554.1	0.89	-0.6
2,468,316	-		Xcc-8004.2554.1	0.89	-0.6
2,468,316	-		Xcc-8004.2554.1	0.89	+0.1
2,468,316	-		Xcc-8004.2554.1	0.89	+0.2
2,468,316	-		Xcc-8004.2554.1	0.89	+0.2
2,468,316	-		Xcc-8004.2554.1	0.89	-1.0