Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2427.1

Experiment: MOKA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOKA
2,368,042	+		Xcc-8004.2426.1	0.60	-0.5
2,368,042	+		Xcc-8004.2426.1	0.60	-1.2
2,368,043	-		Xcc-8004.2426.1	0.60	+0.1
2,368,043	-		Xcc-8004.2426.1	0.60	-0.6
2,368,063	+		Xcc-8004.2426.1	0.61	+0.9
2,368,064	-		Xcc-8004.2426.1	0.61	+0.2
2,368,064	-		Xcc-8004.2426.1	0.61	-0.4
2,368,123	+		Xcc-8004.2426.1	0.63	+0.4
2,368,123	+		Xcc-8004.2426.1	0.63	-0.7
2,368,123	+		Xcc-8004.2426.1	0.63	-1.1
2,368,124	-		Xcc-8004.2426.1	0.63	-0.4
2,368,124	-		Xcc-8004.2426.1	0.63	-0.5
2,368,124	-		Xcc-8004.2426.1	0.63	-0.7
2,368,124	-		Xcc-8004.2426.1	0.63	-1.3
2,368,131	+		Xcc-8004.2426.1	0.64	-0.6
2,368,176	+		Xcc-8004.2426.1	0.66	+1.5
2,368,177	-		Xcc-8004.2426.1	0.66	+1.5
2,368,177	-		Xcc-8004.2426.1	0.66	-0.1
2,368,804	-				-1.0
2,369,045	-				-1.1
2,369,045	-				+0.3
2,369,169	-				+1.1
2,369,243	+				-0.0
2,369,244	-				+0.3
2,369,244	-				-0.3
2,369,288	+				-0.5
2,369,288	+				+1.8
2,369,288	+				+0.4
2,369,288	+				+0.6
2,369,289	-				+0.9
2,369,289	-				-0.2
2,369,289	-				+0.5
2,369,289	-				+0.8
2,369,289	-				+0.8
2,369,289	-				+0.4
2,369,289	-				+0.5
2,369,289	-				+0.1
2,369,719	+		Xcc-8004.2427.1	0.20	+0.3
2,369,720	-		Xcc-8004.2427.1	0.20	+0.3
2,370,003	+		Xcc-8004.2427.1	0.28	+1.1
2,370,283	+		Xcc-8004.2427.1	0.37	+0.4
2,370,283	+		Xcc-8004.2427.1	0.37	-0.6
2,370,284	-		Xcc-8004.2427.1	0.37	+0.6
2,370,284	-		Xcc-8004.2427.1	0.37	+0.0
2,370,344	+		Xcc-8004.2427.1	0.38	+1.0
2,370,344	+		Xcc-8004.2427.1	0.38	+0.3
2,370,345	-		Xcc-8004.2427.1	0.38	-0.4
2,370,345	-		Xcc-8004.2427.1	0.38	-0.2
2,370,347	+		Xcc-8004.2427.1	0.38	+0.3
2,370,347	+		Xcc-8004.2427.1	0.38	-0.7
2,370,347	+		Xcc-8004.2427.1	0.38	+0.1
2,370,347	+		Xcc-8004.2427.1	0.38	+0.0
2,370,347	+		Xcc-8004.2427.1	0.38	+1.2
2,370,347	+		Xcc-8004.2427.1	0.38	+2.7
2,370,347	+		Xcc-8004.2427.1	0.38	+0.9
2,370,348	-		Xcc-8004.2427.1	0.39	+1.1
2,370,348	-		Xcc-8004.2427.1	0.39	+0.2
2,370,348	-		Xcc-8004.2427.1	0.39	-0.9
2,370,348	-		Xcc-8004.2427.1	0.39	-0.1
2,370,348	-		Xcc-8004.2427.1	0.39	+1.0
2,370,348	-		Xcc-8004.2427.1	0.39	+0.2
2,370,348	-		Xcc-8004.2427.1	0.39	-0.6
2,370,348	-		Xcc-8004.2427.1	0.39	+0.1
2,370,348	-		Xcc-8004.2427.1	0.39	+0.1
2,370,348	-		Xcc-8004.2427.1	0.39	+0.4
2,370,348	-		Xcc-8004.2427.1	0.39	+0.9
2,370,635	+		Xcc-8004.2427.1	0.47	+0.5
2,370,636	-		Xcc-8004.2427.1	0.47	+0.7
2,370,636	-		Xcc-8004.2427.1	0.47	+2.0
2,370,774	+		Xcc-8004.2427.1	0.51	+0.5
2,370,843	+		Xcc-8004.2427.1	0.53	+0.5
2,370,843	+		Xcc-8004.2427.1	0.53	-1.4
2,370,843	+		Xcc-8004.2427.1	0.53	-0.3
2,370,855	-		Xcc-8004.2427.1	0.53	+0.5
2,370,855	-		Xcc-8004.2427.1	0.53	-0.5
2,371,016	+		Xcc-8004.2427.1	0.58	-0.8
2,371,016	+		Xcc-8004.2427.1	0.58	+0.5
2,371,017	-		Xcc-8004.2427.1	0.58	+0.3
2,371,017	-		Xcc-8004.2427.1	0.58	+0.3
2,371,034	+		Xcc-8004.2427.1	0.58	+0.1
2,371,035	-		Xcc-8004.2427.1	0.58	-0.1
2,371,035	-		Xcc-8004.2427.1	0.58	-0.2
2,371,160	+		Xcc-8004.2427.1	0.62	+0.8
2,371,160	+		Xcc-8004.2427.1	0.62	+0.9
2,371,160	+		Xcc-8004.2427.1	0.62	+0.2
2,371,160	+		Xcc-8004.2427.1	0.62	+0.5
2,371,160	+		Xcc-8004.2427.1	0.62	-0.8
2,371,160	+		Xcc-8004.2427.1	0.62	+0.1
2,371,161	-		Xcc-8004.2427.1	0.62	+0.7
2,371,161	-		Xcc-8004.2427.1	0.62	-0.3
2,371,161	-		Xcc-8004.2427.1	0.62	-0.2
2,371,161	-		Xcc-8004.2427.1	0.62	-0.6
2,371,271	+		Xcc-8004.2427.1	0.65	-0.3
2,371,388	+		Xcc-8004.2427.1	0.69	-0.1
2,371,388	+		Xcc-8004.2427.1	0.69	+0.4
2,371,388	+		Xcc-8004.2427.1	0.69	+0.5
2,371,388	+		Xcc-8004.2427.1	0.69	-0.3
2,371,389	-		Xcc-8004.2427.1	0.69	-0.7
2,371,389	-		Xcc-8004.2427.1	0.69	+0.2
2,371,389	-		Xcc-8004.2427.1	0.69	-1.1
2,371,389	-		Xcc-8004.2427.1	0.69	+1.9
2,371,389	-		Xcc-8004.2427.1	0.69	+0.6
2,371,394	+		Xcc-8004.2427.1	0.69	-0.4
2,371,412	+		Xcc-8004.2427.1	0.69	+0.5
2,371,412	+		Xcc-8004.2427.1	0.69	+0.4
2,371,413	-		Xcc-8004.2427.1	0.69	+0.6
2,371,413	-		Xcc-8004.2427.1	0.69	+0.7
2,371,693	+		Xcc-8004.2427.1	0.78	+0.3
2,371,693	+		Xcc-8004.2427.1	0.78	+1.3
2,371,694	-		Xcc-8004.2427.1	0.78	-0.4
2,371,694	-		Xcc-8004.2427.1	0.78	+0.8
2,371,694	-		Xcc-8004.2427.1	0.78	+1.0
2,371,694	-		Xcc-8004.2427.1	0.78	-0.6
2,371,694	-		Xcc-8004.2427.1	0.78	+1.1
2,371,694	-		Xcc-8004.2427.1	0.78	-0.9
2,371,694	-		Xcc-8004.2427.1	0.78	+0.5
2,371,694	-		Xcc-8004.2427.1	0.78	-0.3
2,371,697	+		Xcc-8004.2427.1	0.78	+0.4
2,371,697	+		Xcc-8004.2427.1	0.78	+0.6
2,371,697	+		Xcc-8004.2427.1	0.78	-0.2
2,371,697	+		Xcc-8004.2427.1	0.78	+1.5
2,371,697	+		Xcc-8004.2427.1	0.78	-0.0
2,371,823	+		Xcc-8004.2427.1	0.81	+1.5
2,371,823	+		Xcc-8004.2427.1	0.81	+0.4
2,371,823	+		Xcc-8004.2427.1	0.81	+0.4
2,371,824	-		Xcc-8004.2427.1	0.81	+1.5
2,371,824	-		Xcc-8004.2427.1	0.81	+0.9
2,371,975	+		Xcc-8004.2427.1	0.86	+0.3
2,371,976	-		Xcc-8004.2427.1	0.86	-1.7
2,371,976	-		Xcc-8004.2427.1	0.86	-0.6
2,371,976	-		Xcc-8004.2427.1	0.86	+0.3
2,371,976	-		Xcc-8004.2427.1	0.86	-0.0
2,371,976	-		Xcc-8004.2427.1	0.86	-0.2
2,371,976	-		Xcc-8004.2427.1	0.86	-0.0
2,372,040	+		Xcc-8004.2427.1	0.88	+1.0
2,372,041	-		Xcc-8004.2427.1	0.88	+0.3
2,372,041	-		Xcc-8004.2427.1	0.88	-1.5
2,372,041	-		Xcc-8004.2427.1	0.88	-0.0
2,372,041	-		Xcc-8004.2427.1	0.88	+0.1
2,372,041	-		Xcc-8004.2427.1	0.88	+0.2
2,372,085	+		Xcc-8004.2427.1	0.89	-0.3
2,372,086	-		Xcc-8004.2427.1	0.89	+0.1
2,372,086	-		Xcc-8004.2427.1	0.89	+0.7
2,372,087	+		Xcc-8004.2427.1	0.89	-0.7
2,372,087	+		Xcc-8004.2427.1	0.89	+1.3
2,372,087	+		Xcc-8004.2427.1	0.89	+0.6
2,372,087	+		Xcc-8004.2427.1	0.89	-0.6
2,372,087	+		Xcc-8004.2427.1	0.89	+0.6
2,372,087	+		Xcc-8004.2427.1	0.89	+0.3
2,372,087	+		Xcc-8004.2427.1	0.89	-0.2
2,372,087	+		Xcc-8004.2427.1	0.89	-0.2
2,372,087	+		Xcc-8004.2427.1	0.89	+0.6
2,372,087	+		Xcc-8004.2427.1	0.89	+1.5
2,372,088	-		Xcc-8004.2427.1	0.89	+0.7
2,372,088	-		Xcc-8004.2427.1	0.89	-0.2
2,372,088	-		Xcc-8004.2427.1	0.89	+1.5
2,372,088	-		Xcc-8004.2427.1	0.89	+0.1
2,372,088	-		Xcc-8004.2427.1	0.89	+0.1
2,372,088	-		Xcc-8004.2427.1	0.89	-0.2
2,372,088	-		Xcc-8004.2427.1	0.89	+0.4
2,372,088	-		Xcc-8004.2427.1	0.89	+0.2
2,372,088	-		Xcc-8004.2427.1	0.89	-0.6
2,372,200	-				+0.1
2,372,205	+				+0.8
2,372,205	+				+0.4
2,372,206	-				-0.3
2,372,206	-				+0.3
2,372,270	+				-1.4
2,372,270	+				+0.4
2,372,270	+				+0.7
2,372,270	+				+1.2
2,372,270	+				+0.2
2,372,270	+				-0.3
2,372,270	+				+0.5
2,372,270	+				+1.3
2,372,270	+				-0.1
2,372,271	-				+0.7
2,372,271	-				-0.5
2,372,271	-				+0.1
2,372,271	-				+0.4
2,372,401	+				-0.6
2,372,401	+				-1.7
2,372,402	-				+0.1
2,372,402	-				+1.3
2,372,501	+				-0.2
2,372,501	+				+0.3
2,372,501	+				-0.2
2,372,502	-				+1.6
2,372,502	-				-0.4
2,372,593	+		Xcc-8004.2428.1	0.17	+1.1
2,372,593	+		Xcc-8004.2428.1	0.17	-0.9
2,372,593	+		Xcc-8004.2428.1	0.17	-0.1
2,372,593	+		Xcc-8004.2428.1	0.17	-1.3
2,372,593	+		Xcc-8004.2428.1	0.17	-1.0
2,372,593	+		Xcc-8004.2428.1	0.17	-1.5
2,372,593	+		Xcc-8004.2428.1	0.17	+0.4
2,372,593	+		Xcc-8004.2428.1	0.17	-0.5
2,372,594	-		Xcc-8004.2428.1	0.17	-0.3
2,372,594	-		Xcc-8004.2428.1	0.17	-1.0
2,372,594	-		Xcc-8004.2428.1	0.17	-0.3
2,372,594	-		Xcc-8004.2428.1	0.17	-0.7
2,372,594	-		Xcc-8004.2428.1	0.17	+0.2
2,372,594	-		Xcc-8004.2428.1	0.17	+0.0
2,372,594	-		Xcc-8004.2428.1	0.17	+1.2
2,372,594	-		Xcc-8004.2428.1	0.17	+0.0
2,372,914	+				-0.1
2,372,914	+				+0.5
2,372,915	-				+1.3
2,372,915	-				-1.0
2,372,915	-				-0.9
2,372,938	+				-0.2
2,372,938	+				+0.3
2,372,938	+				+0.5
2,372,938	+				-0.9
2,372,938	+				-3.1
2,372,938	+				-0.5
2,372,938	+				+0.7
2,372,938	+				+0.5
2,372,938	+				+0.4
2,372,939	-				+2.2
2,372,939	-				-0.2
2,372,939	-				-0.9
2,372,939	-				-0.3
2,372,939	-				-0.1
2,372,940	+				-0.2
2,373,033	+				-0.1
2,373,033	+				+0.4
2,373,033	+				+1.8
2,373,147	+				-0.2
2,373,147	+				+0.9
2,373,148	-				-2.1
2,373,148	-				+0.4
2,373,148	-				+0.5
2,373,148	-				-1.0
2,373,153	+				+1.3
2,373,153	+				-0.5
2,373,153	+				+0.8
2,373,153	+				-0.1
2,373,154	-				-0.4
2,373,154	-				-0.0
2,373,154	-				-0.0
2,373,154	-				+0.1
2,373,154	-				-1.1
2,373,154	-				+1.5
2,373,154	-				-0.7
2,373,188	-				-0.4
2,373,188	-				+0.1
2,373,252	+				-0.5
2,373,252	+				-2.1
2,373,252	+				+0.3
2,373,252	+				-0.2
2,373,252	+				+0.8
2,373,252	+				-1.2
2,373,252	+				+0.9
2,373,253	-				+0.2
2,373,253	-				+1.0
2,373,253	-				-1.7
2,373,308	+				-0.7
2,373,308	+				-1.0
2,373,308	+				-0.2
2,373,308	+				+1.0
2,373,308	+				-0.2
2,373,308	+				-0.3
2,373,309	-				-0.8
2,373,309	-				-1.1
2,373,309	-				+1.1
2,373,309	-				-0.5
2,373,309	-				+0.5
2,373,351	+				-0.2
2,373,352	-				-0.8
2,373,380	-				-0.4