Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2403.1

Experiment: MOKA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2402.1 and Xcc-8004.2403.1 are separated by 136 nucleotidesXcc-8004.2403.1 and Xcc-8004.2404.1 are separated by 351 nucleotidesXcc-8004.2404.1 and Xcc-8004.2405.1 are separated by 100 nucleotides Xcc-8004.2402.1: Xcc-8004.2402.1 - Exoenzymes regulatory protein AepA precursor, at 2,345,452 to 2,347,410 Xcc-8004.2402.1 Xcc-8004.2403.1: Xcc-8004.2403.1 - MFS transporter, at 2,347,547 to 2,349,178 Xcc-8004.2403.1 Xcc-8004.2404.1: Xcc-8004.2404.1 - hypothetical protein, at 2,349,530 to 2,349,886 Xcc-8004.2404.1 Xcc-8004.2405.1: Xcc-8004.2405.1 - Alpha/beta hydrolase fold (EC 3.8.1.5), at 2,349,987 to 2,350,979 Xcc-8004.2405.1 Position (kb) 2347 2348 2349 2350Strain fitness (log2 ratio) -2 -1 0 1 2at 2346.592 kb on + strand, within Xcc-8004.2402.1at 2346.593 kb on - strand, within Xcc-8004.2402.1at 2346.625 kb on + strand, within Xcc-8004.2402.1at 2346.760 kb on + strand, within Xcc-8004.2402.1at 2346.760 kb on + strand, within Xcc-8004.2402.1at 2346.761 kb on - strand, within Xcc-8004.2402.1at 2346.886 kb on + strand, within Xcc-8004.2402.1at 2346.886 kb on + strand, within Xcc-8004.2402.1at 2346.886 kb on + strand, within Xcc-8004.2402.1at 2346.887 kb on - strand, within Xcc-8004.2402.1at 2346.887 kb on - strand, within Xcc-8004.2402.1at 2346.949 kb on + strand, within Xcc-8004.2402.1at 2347.090 kb on + strand, within Xcc-8004.2402.1at 2347.090 kb on + strand, within Xcc-8004.2402.1at 2347.090 kb on + strand, within Xcc-8004.2402.1at 2347.091 kb on - strand, within Xcc-8004.2402.1at 2347.091 kb on - strand, within Xcc-8004.2402.1at 2347.091 kb on - strand, within Xcc-8004.2402.1at 2347.475 kb on + strandat 2347.475 kb on + strandat 2347.475 kb on + strandat 2347.475 kb on + strandat 2347.476 kb on - strandat 2347.476 kb on - strandat 2347.645 kb on + strandat 2347.806 kb on - strand, within Xcc-8004.2403.1at 2348.024 kb on - strand, within Xcc-8004.2403.1at 2348.214 kb on - strand, within Xcc-8004.2403.1at 2348.343 kb on - strand, within Xcc-8004.2403.1at 2348.343 kb on - strand, within Xcc-8004.2403.1at 2348.418 kb on - strand, within Xcc-8004.2403.1at 2348.418 kb on - strand, within Xcc-8004.2403.1at 2348.418 kb on - strand, within Xcc-8004.2403.1at 2348.618 kb on + strand, within Xcc-8004.2403.1at 2348.618 kb on + strand, within Xcc-8004.2403.1at 2348.619 kb on - strand, within Xcc-8004.2403.1at 2348.620 kb on + strand, within Xcc-8004.2403.1at 2348.621 kb on - strand, within Xcc-8004.2403.1at 2348.621 kb on - strand, within Xcc-8004.2403.1at 2348.727 kb on + strand, within Xcc-8004.2403.1at 2348.728 kb on - strand, within Xcc-8004.2403.1at 2349.000 kb on - strand, within Xcc-8004.2403.1at 2349.161 kb on - strandat 2349.161 kb on - strandat 2349.161 kb on - strandat 2349.172 kb on + strandat 2349.326 kb on - strandat 2349.326 kb on - strandat 2349.326 kb on - strandat 2349.326 kb on - strandat 2349.326 kb on - strandat 2349.326 kb on - strandat 2349.370 kb on + strandat 2349.370 kb on + strandat 2349.381 kb on - strandat 2349.465 kb on + strandat 2349.531 kb on + strandat 2349.531 kb on + strandat 2349.532 kb on - strandat 2349.589 kb on + strand, within Xcc-8004.2404.1at 2349.589 kb on + strand, within Xcc-8004.2404.1at 2349.590 kb on - strand, within Xcc-8004.2404.1at 2349.595 kb on + strand, within Xcc-8004.2404.1at 2349.596 kb on - strand, within Xcc-8004.2404.1at 2349.596 kb on - strand, within Xcc-8004.2404.1at 2349.601 kb on + strand, within Xcc-8004.2404.1at 2349.602 kb on - strand, within Xcc-8004.2404.1at 2349.726 kb on + strand, within Xcc-8004.2404.1at 2349.793 kb on + strand, within Xcc-8004.2404.1at 2349.868 kb on + strandat 2349.868 kb on + strandat 2349.872 kb on + strandat 2349.940 kb on - strandat 2350.066 kb on + strandat 2350.067 kb on - strandat 2350.067 kb on - strandat 2350.067 kb on - strandat 2350.067 kb on - strandat 2350.067 kb on - strandat 2350.152 kb on + strand, within Xcc-8004.2405.1at 2350.152 kb on + strand, within Xcc-8004.2405.1at 2350.152 kb on + strand, within Xcc-8004.2405.1at 2350.153 kb on - strand, within Xcc-8004.2405.1at 2350.153 kb on - strand, within Xcc-8004.2405.1

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Per-strain Table

Position Strand Gene LocusTag Fraction MOKA
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2,346,592 + Xcc-8004.2402.1 0.58 +0.4
2,346,593 - Xcc-8004.2402.1 0.58 +0.2
2,346,625 + Xcc-8004.2402.1 0.60 -0.3
2,346,760 + Xcc-8004.2402.1 0.67 +0.3
2,346,760 + Xcc-8004.2402.1 0.67 +1.5
2,346,761 - Xcc-8004.2402.1 0.67 +0.6
2,346,886 + Xcc-8004.2402.1 0.73 -0.6
2,346,886 + Xcc-8004.2402.1 0.73 +0.4
2,346,886 + Xcc-8004.2402.1 0.73 +0.7
2,346,887 - Xcc-8004.2402.1 0.73 -0.0
2,346,887 - Xcc-8004.2402.1 0.73 -0.8
2,346,949 + Xcc-8004.2402.1 0.76 +0.8
2,347,090 + Xcc-8004.2402.1 0.84 -0.6
2,347,090 + Xcc-8004.2402.1 0.84 -0.9
2,347,090 + Xcc-8004.2402.1 0.84 -0.9
2,347,091 - Xcc-8004.2402.1 0.84 -0.3
2,347,091 - Xcc-8004.2402.1 0.84 -2.0
2,347,091 - Xcc-8004.2402.1 0.84 -0.3
2,347,475 + -0.7
2,347,475 + +0.3
2,347,475 + +0.8
2,347,475 + -1.5
2,347,476 - +1.3
2,347,476 - +0.3
2,347,645 + +0.2
2,347,806 - Xcc-8004.2403.1 0.16 -1.3
2,348,024 - Xcc-8004.2403.1 0.29 -0.3
2,348,214 - Xcc-8004.2403.1 0.41 +1.0
2,348,343 - Xcc-8004.2403.1 0.49 +0.8
2,348,343 - Xcc-8004.2403.1 0.49 +0.2
2,348,418 - Xcc-8004.2403.1 0.53 +0.9
2,348,418 - Xcc-8004.2403.1 0.53 +0.0
2,348,418 - Xcc-8004.2403.1 0.53 +1.0
2,348,618 + Xcc-8004.2403.1 0.66 -0.3
2,348,618 + Xcc-8004.2403.1 0.66 -0.1
2,348,619 - Xcc-8004.2403.1 0.66 -0.1
2,348,620 + Xcc-8004.2403.1 0.66 -0.5
2,348,621 - Xcc-8004.2403.1 0.66 +0.3
2,348,621 - Xcc-8004.2403.1 0.66 +0.4
2,348,727 + Xcc-8004.2403.1 0.72 +2.0
2,348,728 - Xcc-8004.2403.1 0.72 +0.7
2,349,000 - Xcc-8004.2403.1 0.89 -0.7
2,349,161 - +0.0
2,349,161 - -0.4
2,349,161 - -0.9
2,349,172 + +0.7
2,349,326 - +0.2
2,349,326 - -1.0
2,349,326 - +0.1
2,349,326 - +0.6
2,349,326 - -1.2
2,349,326 - -0.1
2,349,370 + -0.7
2,349,370 + +0.5
2,349,381 - +0.5
2,349,465 + +0.2
2,349,531 + +0.4
2,349,531 + -0.9
2,349,532 - -1.2
2,349,589 + Xcc-8004.2404.1 0.17 -0.5
2,349,589 + Xcc-8004.2404.1 0.17 -0.7
2,349,590 - Xcc-8004.2404.1 0.17 -0.6
2,349,595 + Xcc-8004.2404.1 0.18 +1.3
2,349,596 - Xcc-8004.2404.1 0.18 -0.4
2,349,596 - Xcc-8004.2404.1 0.18 -0.4
2,349,601 + Xcc-8004.2404.1 0.20 +1.4
2,349,602 - Xcc-8004.2404.1 0.20 -0.4
2,349,726 + Xcc-8004.2404.1 0.55 -0.8
2,349,793 + Xcc-8004.2404.1 0.74 -0.0
2,349,868 + -0.8
2,349,868 + -0.2
2,349,872 + -0.8
2,349,940 - -1.1
2,350,066 + -1.5
2,350,067 - -0.6
2,350,067 - -1.0
2,350,067 - -0.0
2,350,067 - -0.2
2,350,067 - +0.0
2,350,152 + Xcc-8004.2405.1 0.17 +1.7
2,350,152 + Xcc-8004.2405.1 0.17 -0.4
2,350,152 + Xcc-8004.2405.1 0.17 -0.8
2,350,153 - Xcc-8004.2405.1 0.17 +1.0
2,350,153 - Xcc-8004.2405.1 0.17 +0.7

Or see this region's nucleotide sequence