Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2361.1

Experiment: MOKA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOKA
2,302,572	-		Xcc-8004.2358.1	0.66	-2.9
2,302,572	-		Xcc-8004.2358.1	0.66	-0.4
2,302,572	-		Xcc-8004.2358.1	0.66	+1.3
2,302,617	-		Xcc-8004.2358.1	0.71	-1.2
2,302,617	-		Xcc-8004.2358.1	0.71	-0.7
2,302,617	-		Xcc-8004.2358.1	0.71	-1.1
2,302,617	-		Xcc-8004.2358.1	0.71	+1.0
2,302,617	-		Xcc-8004.2358.1	0.71	-1.9
2,302,617	-		Xcc-8004.2358.1	0.71	-0.4
2,302,617	-		Xcc-8004.2358.1	0.71	+0.5
2,302,625	+		Xcc-8004.2358.1	0.72	+0.2
2,302,626	-		Xcc-8004.2358.1	0.72	-0.5
2,302,626	-		Xcc-8004.2358.1	0.72	-0.4
2,302,755	-		Xcc-8004.2358.1	0.87	+0.5
2,302,755	-		Xcc-8004.2358.1	0.87	-0.6
2,302,755	-		Xcc-8004.2358.1	0.87	+0.1
2,302,755	-		Xcc-8004.2358.1	0.87	-0.4
2,302,755	-		Xcc-8004.2358.1	0.87	+0.3
2,302,755	-		Xcc-8004.2358.1	0.87	-1.7
2,302,755	-		Xcc-8004.2358.1	0.87	-0.3
2,302,755	-		Xcc-8004.2358.1	0.87	-2.4
2,302,755	-		Xcc-8004.2358.1	0.87	-0.5
2,302,755	-		Xcc-8004.2358.1	0.87	-0.3
2,302,755	-		Xcc-8004.2358.1	0.87	-0.2
2,302,755	-		Xcc-8004.2358.1	0.87	-0.3
2,302,755	-		Xcc-8004.2358.1	0.87	-0.6
2,302,755	-		Xcc-8004.2358.1	0.87	+0.2
2,302,755	-		Xcc-8004.2358.1	0.87	-0.8
2,302,755	-		Xcc-8004.2358.1	0.87	-0.1
2,302,755	-		Xcc-8004.2358.1	0.87	-0.7
2,302,755	-		Xcc-8004.2358.1	0.87	-0.3
2,302,755	-		Xcc-8004.2358.1	0.87	-1.0
2,302,755	-		Xcc-8004.2358.1	0.87	-1.5
2,302,946	+				-0.5
2,302,947	-				-0.9
2,302,947	-				+0.6
2,302,947	-				+0.0
2,302,947	-				+0.0
2,302,947	-				-0.7
2,302,996	-				-0.2
2,302,996	-				+0.5
2,302,996	-				+0.4
2,302,996	-				+0.0
2,302,996	-				+0.5
2,302,996	-				+0.1
2,302,996	-				+0.0
2,302,996	-				+0.3
2,302,996	-				+1.7
2,303,061	-				-1.3
2,303,061	-				+0.8
2,303,162	-				-0.2
2,303,162	-				-0.2
2,303,162	-				+0.6
2,303,162	-				+0.4
2,303,162	-				+0.3
2,303,162	-				-0.9
2,303,162	-				+0.8
2,303,248	+				-0.1
2,303,248	+				+0.0
2,303,248	+				-0.8
2,303,248	+				-0.5
2,303,248	+				+0.7
2,303,248	+				+0.7
2,303,249	-				+0.3
2,303,249	-				-1.2
2,303,249	-				-1.2
2,303,249	-				+1.1
2,303,249	-				+1.0
2,303,249	-				-0.1
2,303,249	-				+0.7
2,303,252	+				+0.6
2,303,252	+				+1.0
2,303,252	+				-0.4
2,303,252	+				+0.3
2,303,252	+				+0.2
2,303,252	+				+1.1
2,303,252	+				+0.6
2,303,252	+				+1.0
2,303,252	+				+0.0
2,303,253	-				-0.0
2,303,253	-				-0.2
2,303,253	-				+0.7
2,303,253	-				-0.9
2,303,253	-				+0.5
2,303,253	-				+0.1
2,303,253	-				-0.0
2,303,253	-				-0.1
2,303,263	+				+0.5
2,303,263	+				-0.6
2,303,263	+				-0.5
2,303,263	+				-2.2
2,303,263	+				-1.5
2,303,263	+				-0.3
2,303,263	+				+0.0
2,303,263	+				-0.2
2,303,264	-				+0.3
2,303,264	-				-0.1
2,303,264	-				+0.3
2,303,264	-				+0.7
2,303,264	-				-0.6
2,303,264	-				-0.1
2,303,264	-				+0.7
2,303,264	-				+1.4
2,303,410	-		Xcc-8004.2360.1	0.56	-0.7
2,303,410	-		Xcc-8004.2360.1	0.56	+0.3
2,303,410	-		Xcc-8004.2360.1	0.56	-0.5
2,303,479	+		Xcc-8004.2360.1	0.79	+0.4
2,303,479	+		Xcc-8004.2360.1	0.79	+0.5
2,303,479	+		Xcc-8004.2360.1	0.79	+0.0
2,303,479	+		Xcc-8004.2360.1	0.79	-0.2
2,303,479	+		Xcc-8004.2360.1	0.79	-1.4
2,303,480	-		Xcc-8004.2360.1	0.79	+0.0
2,303,480	-		Xcc-8004.2360.1	0.79	-0.6
2,303,480	-		Xcc-8004.2360.1	0.79	+0.5
2,303,480	-		Xcc-8004.2360.1	0.79	+1.0
2,303,480	-		Xcc-8004.2360.1	0.79	-0.5
2,303,480	-		Xcc-8004.2360.1	0.79	+0.4
2,303,480	-		Xcc-8004.2360.1	0.79	-0.1
2,303,480	-		Xcc-8004.2360.1	0.79	+0.5
2,303,480	-		Xcc-8004.2360.1	0.79	+1.2
2,303,480	-		Xcc-8004.2360.1	0.79	-0.1
2,303,480	-		Xcc-8004.2360.1	0.79	-1.4
2,303,480	-		Xcc-8004.2360.1	0.79	-0.3
2,303,480	-		Xcc-8004.2360.1	0.79	-1.7
2,303,480	-		Xcc-8004.2360.1	0.79	-1.1
2,303,480	-		Xcc-8004.2360.1	0.79	-0.2
2,303,497	+		Xcc-8004.2360.1	0.85	+0.1
2,303,497	+		Xcc-8004.2360.1	0.85	+0.2
2,303,497	+		Xcc-8004.2360.1	0.85	+2.4
2,303,497	+		Xcc-8004.2360.1	0.85	-1.4
2,303,497	+		Xcc-8004.2360.1	0.85	-0.3
2,303,497	+		Xcc-8004.2360.1	0.85	+0.5
2,303,497	+		Xcc-8004.2360.1	0.85	-0.8
2,303,497	+		Xcc-8004.2360.1	0.85	-0.0
2,303,497	+		Xcc-8004.2360.1	0.85	+0.8
2,303,497	+		Xcc-8004.2360.1	0.85	-1.1
2,303,497	+		Xcc-8004.2360.1	0.85	+0.6
2,303,497	+		Xcc-8004.2360.1	0.85	-0.6
2,303,497	+		Xcc-8004.2360.1	0.85	-0.6
2,303,497	+		Xcc-8004.2360.1	0.85	-1.2
2,303,497	+		Xcc-8004.2360.1	0.85	-1.3
2,303,497	+		Xcc-8004.2360.1	0.85	-0.3
2,303,498	-		Xcc-8004.2360.1	0.85	+0.1
2,303,498	-		Xcc-8004.2360.1	0.85	-0.2
2,303,498	-		Xcc-8004.2360.1	0.85	-0.2
2,303,498	-		Xcc-8004.2360.1	0.85	-0.3
2,303,498	-		Xcc-8004.2360.1	0.85	-1.4
2,303,498	-		Xcc-8004.2360.1	0.85	-0.6
2,303,498	-		Xcc-8004.2360.1	0.85	+0.6
2,303,498	-		Xcc-8004.2360.1	0.85	-0.3
2,303,498	-		Xcc-8004.2360.1	0.85	+0.8
2,303,498	-		Xcc-8004.2360.1	0.85	+0.5
2,303,498	-		Xcc-8004.2360.1	0.85	+0.8
2,303,498	-		Xcc-8004.2360.1	0.85	+0.6
2,303,498	-		Xcc-8004.2360.1	0.85	-0.3
2,303,498	-		Xcc-8004.2360.1	0.85	+0.2
2,303,727	+		Xcc-8004.2361.1	0.70	+0.6
2,303,727	+		Xcc-8004.2361.1	0.70	+0.5
2,303,727	+		Xcc-8004.2361.1	0.70	-1.7
2,303,727	+		Xcc-8004.2361.1	0.70	-0.3
2,303,727	+		Xcc-8004.2361.1	0.70	+1.3
2,303,728	-		Xcc-8004.2361.1	0.70	+0.7
2,303,728	-		Xcc-8004.2361.1	0.70	+0.9
2,303,728	-		Xcc-8004.2361.1	0.70	-0.4
2,303,728	-		Xcc-8004.2361.1	0.70	+0.9
2,303,806	-				-1.5
2,304,142	-				-0.1
2,304,146	-				-0.9
2,304,166	+				+0.3
2,304,166	+				+0.6
2,304,166	+				-0.3
2,304,166	+				+1.1
2,304,166	+				-0.6
2,304,167	-				-0.2
2,304,167	-				-0.1
2,304,167	-				+0.6
2,304,167	-				-0.2
2,304,167	-				-0.8
2,304,213	+				+0.7
2,304,213	+				-0.2
2,304,213	+				-0.1
2,304,213	+				-0.2
2,304,214	-				+0.3
2,304,347	+				+0.5
2,304,502	+		Xcc-8004.2362.1	0.21	-0.0
2,304,503	-		Xcc-8004.2362.1	0.22	-1.1
2,304,503	-		Xcc-8004.2362.1	0.22	+0.4
2,304,503	-		Xcc-8004.2362.1	0.22	-0.2
2,304,583	+		Xcc-8004.2362.1	0.29	+0.3
2,304,583	+		Xcc-8004.2362.1	0.29	+0.6
2,304,584	-		Xcc-8004.2362.1	0.29	-0.1
2,304,584	-		Xcc-8004.2362.1	0.29	+1.5
2,304,664	+		Xcc-8004.2362.1	0.37	-0.3
2,304,664	+		Xcc-8004.2362.1	0.37	-1.1
2,304,665	-		Xcc-8004.2362.1	0.37	-0.2