Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2175.1

Experiment: MOKA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2174.1 and Xcc-8004.2175.1 are separated by 153 nucleotidesXcc-8004.2175.1 and Xcc-8004.2176.1 overlap by 4 nucleotides Xcc-8004.2174.1: Xcc-8004.2174.1 - hypothetical protein, at 2,107,259 to 2,109,001 Xcc-8004.2174.1 Xcc-8004.2175.1: Xcc-8004.2175.1 - 1-phosphofructokinase (EC 2.7.1.56), at 2,109,155 to 2,110,111 Xcc-8004.2175.1 Xcc-8004.2176.1: Xcc-8004.2176.1 - Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9), at 2,110,108 to 2,112,624 Xcc-8004.2176.1 Position (kb) 2109 2110 2111Strain fitness (log2 ratio) -2 -1 0 1 2at 2108.178 kb on + strand, within Xcc-8004.2174.1at 2108.178 kb on + strand, within Xcc-8004.2174.1at 2108.178 kb on + strand, within Xcc-8004.2174.1at 2108.178 kb on + strand, within Xcc-8004.2174.1at 2108.178 kb on + strand, within Xcc-8004.2174.1at 2108.178 kb on + strand, within Xcc-8004.2174.1at 2108.178 kb on + strand, within Xcc-8004.2174.1at 2108.178 kb on + strand, within Xcc-8004.2174.1at 2108.178 kb on + strand, within Xcc-8004.2174.1at 2108.178 kb on + strand, within Xcc-8004.2174.1at 2108.178 kb on + strand, within Xcc-8004.2174.1at 2108.178 kb on + strand, within Xcc-8004.2174.1at 2108.178 kb on + strand, within Xcc-8004.2174.1at 2108.178 kb on + strand, within Xcc-8004.2174.1at 2108.178 kb on + strand, within Xcc-8004.2174.1at 2108.178 kb on + strand, within Xcc-8004.2174.1at 2108.178 kb on + strand, within Xcc-8004.2174.1at 2108.179 kb on - strand, within Xcc-8004.2174.1at 2108.179 kb on - strand, within Xcc-8004.2174.1at 2108.179 kb on - strand, within Xcc-8004.2174.1at 2108.179 kb on - strand, within Xcc-8004.2174.1at 2108.179 kb on - strand, within Xcc-8004.2174.1at 2108.271 kb on + strand, within Xcc-8004.2174.1at 2108.271 kb on + strand, within Xcc-8004.2174.1at 2108.271 kb on + strand, within Xcc-8004.2174.1at 2108.271 kb on + strand, within Xcc-8004.2174.1at 2108.271 kb on + strand, within Xcc-8004.2174.1at 2108.272 kb on - strand, within Xcc-8004.2174.1at 2108.272 kb on - strand, within Xcc-8004.2174.1at 2108.272 kb on - strand, within Xcc-8004.2174.1at 2108.272 kb on - strand, within Xcc-8004.2174.1at 2108.272 kb on - strand, within Xcc-8004.2174.1at 2108.272 kb on - strand, within Xcc-8004.2174.1at 2108.686 kb on + strand, within Xcc-8004.2174.1at 2108.686 kb on + strand, within Xcc-8004.2174.1at 2108.686 kb on + strand, within Xcc-8004.2174.1at 2108.686 kb on + strand, within Xcc-8004.2174.1at 2108.686 kb on + strand, within Xcc-8004.2174.1at 2108.686 kb on + strand, within Xcc-8004.2174.1at 2108.687 kb on - strand, within Xcc-8004.2174.1at 2108.687 kb on - strand, within Xcc-8004.2174.1at 2108.687 kb on - strand, within Xcc-8004.2174.1at 2108.687 kb on - strand, within Xcc-8004.2174.1at 2108.687 kb on - strand, within Xcc-8004.2174.1at 2108.744 kb on + strand, within Xcc-8004.2174.1at 2108.745 kb on - strand, within Xcc-8004.2174.1at 2108.960 kb on - strandat 2109.018 kb on + strandat 2109.018 kb on + strandat 2109.018 kb on + strandat 2109.019 kb on - strandat 2109.019 kb on - strandat 2109.019 kb on - strandat 2109.062 kb on - strandat 2109.081 kb on - strandat 2109.081 kb on - strandat 2109.081 kb on - strandat 2109.081 kb on - strandat 2109.119 kb on - strandat 2109.119 kb on - strandat 2109.119 kb on - strandat 2109.144 kb on + strandat 2109.144 kb on + strandat 2109.145 kb on - strandat 2109.145 kb on - strandat 2109.145 kb on - strandat 2109.145 kb on - strandat 2109.145 kb on - strandat 2109.211 kb on + strandat 2109.552 kb on + strand, within Xcc-8004.2175.1at 2109.552 kb on + strand, within Xcc-8004.2175.1at 2109.552 kb on + strand, within Xcc-8004.2175.1at 2109.552 kb on + strand, within Xcc-8004.2175.1at 2109.553 kb on - strand, within Xcc-8004.2175.1at 2110.451 kb on + strand, within Xcc-8004.2176.1at 2110.451 kb on + strand, within Xcc-8004.2176.1at 2110.451 kb on + strand, within Xcc-8004.2176.1at 2110.451 kb on + strand, within Xcc-8004.2176.1at 2110.451 kb on + strand, within Xcc-8004.2176.1at 2110.451 kb on + strand, within Xcc-8004.2176.1at 2110.451 kb on + strand, within Xcc-8004.2176.1at 2110.451 kb on + strand, within Xcc-8004.2176.1at 2110.452 kb on - strand, within Xcc-8004.2176.1at 2110.452 kb on - strand, within Xcc-8004.2176.1at 2110.452 kb on - strand, within Xcc-8004.2176.1at 2110.452 kb on - strand, within Xcc-8004.2176.1at 2110.452 kb on - strand, within Xcc-8004.2176.1at 2110.452 kb on - strand, within Xcc-8004.2176.1at 2110.679 kb on + strand, within Xcc-8004.2176.1at 2110.679 kb on + strand, within Xcc-8004.2176.1at 2110.680 kb on - strand, within Xcc-8004.2176.1at 2110.862 kb on + strand, within Xcc-8004.2176.1at 2110.862 kb on + strand, within Xcc-8004.2176.1at 2110.862 kb on + strand, within Xcc-8004.2176.1at 2110.862 kb on + strand, within Xcc-8004.2176.1at 2110.862 kb on + strand, within Xcc-8004.2176.1at 2110.862 kb on + strand, within Xcc-8004.2176.1at 2110.862 kb on + strand, within Xcc-8004.2176.1at 2110.862 kb on + strand, within Xcc-8004.2176.1at 2110.862 kb on + strand, within Xcc-8004.2176.1at 2110.862 kb on + strand, within Xcc-8004.2176.1at 2110.862 kb on + strand, within Xcc-8004.2176.1at 2110.862 kb on + strand, within Xcc-8004.2176.1at 2110.862 kb on + strand, within Xcc-8004.2176.1at 2110.862 kb on + strand, within Xcc-8004.2176.1at 2110.862 kb on + strand, within Xcc-8004.2176.1at 2110.862 kb on + strand, within Xcc-8004.2176.1at 2110.862 kb on + strand, within Xcc-8004.2176.1at 2110.862 kb on + strand, within Xcc-8004.2176.1at 2110.863 kb on - strand, within Xcc-8004.2176.1at 2110.863 kb on - strand, within Xcc-8004.2176.1at 2110.863 kb on - strand, within Xcc-8004.2176.1at 2110.863 kb on - strand, within Xcc-8004.2176.1at 2110.863 kb on - strand, within Xcc-8004.2176.1at 2110.863 kb on - strand, within Xcc-8004.2176.1at 2110.863 kb on - strand, within Xcc-8004.2176.1at 2110.863 kb on - strand, within Xcc-8004.2176.1at 2110.863 kb on - strand, within Xcc-8004.2176.1at 2110.863 kb on - strand, within Xcc-8004.2176.1at 2110.863 kb on - strand, within Xcc-8004.2176.1at 2110.863 kb on - strand, within Xcc-8004.2176.1at 2110.863 kb on - strand, within Xcc-8004.2176.1at 2110.863 kb on - strand, within Xcc-8004.2176.1at 2110.863 kb on - strand, within Xcc-8004.2176.1at 2110.863 kb on - strand, within Xcc-8004.2176.1at 2110.871 kb on + strand, within Xcc-8004.2176.1at 2110.871 kb on + strand, within Xcc-8004.2176.1at 2111.085 kb on + strand, within Xcc-8004.2176.1

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Per-strain Table

Position Strand Gene LocusTag Fraction MOKA
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2,108,178 + Xcc-8004.2174.1 0.53 -1.0
2,108,178 + Xcc-8004.2174.1 0.53 +0.5
2,108,178 + Xcc-8004.2174.1 0.53 +1.5
2,108,178 + Xcc-8004.2174.1 0.53 -1.0
2,108,178 + Xcc-8004.2174.1 0.53 +0.4
2,108,178 + Xcc-8004.2174.1 0.53 +0.5
2,108,178 + Xcc-8004.2174.1 0.53 +1.1
2,108,178 + Xcc-8004.2174.1 0.53 -0.8
2,108,178 + Xcc-8004.2174.1 0.53 +1.1
2,108,178 + Xcc-8004.2174.1 0.53 -0.1
2,108,178 + Xcc-8004.2174.1 0.53 -1.3
2,108,178 + Xcc-8004.2174.1 0.53 -1.0
2,108,178 + Xcc-8004.2174.1 0.53 -0.8
2,108,178 + Xcc-8004.2174.1 0.53 -0.7
2,108,178 + Xcc-8004.2174.1 0.53 -1.5
2,108,178 + Xcc-8004.2174.1 0.53 +0.4
2,108,178 + Xcc-8004.2174.1 0.53 +0.3
2,108,179 - Xcc-8004.2174.1 0.53 +1.0
2,108,179 - Xcc-8004.2174.1 0.53 +1.4
2,108,179 - Xcc-8004.2174.1 0.53 -1.4
2,108,179 - Xcc-8004.2174.1 0.53 +0.4
2,108,179 - Xcc-8004.2174.1 0.53 -1.0
2,108,271 + Xcc-8004.2174.1 0.58 -0.8
2,108,271 + Xcc-8004.2174.1 0.58 -0.1
2,108,271 + Xcc-8004.2174.1 0.58 +0.9
2,108,271 + Xcc-8004.2174.1 0.58 -0.5
2,108,271 + Xcc-8004.2174.1 0.58 +0.1
2,108,272 - Xcc-8004.2174.1 0.58 -1.6
2,108,272 - Xcc-8004.2174.1 0.58 -0.0
2,108,272 - Xcc-8004.2174.1 0.58 -0.3
2,108,272 - Xcc-8004.2174.1 0.58 +0.1
2,108,272 - Xcc-8004.2174.1 0.58 -0.3
2,108,272 - Xcc-8004.2174.1 0.58 +1.0
2,108,686 + Xcc-8004.2174.1 0.82 +0.1
2,108,686 + Xcc-8004.2174.1 0.82 -0.1
2,108,686 + Xcc-8004.2174.1 0.82 -0.1
2,108,686 + Xcc-8004.2174.1 0.82 -0.6
2,108,686 + Xcc-8004.2174.1 0.82 -0.7
2,108,686 + Xcc-8004.2174.1 0.82 +0.7
2,108,687 - Xcc-8004.2174.1 0.82 +0.5
2,108,687 - Xcc-8004.2174.1 0.82 +0.7
2,108,687 - Xcc-8004.2174.1 0.82 +0.2
2,108,687 - Xcc-8004.2174.1 0.82 -1.6
2,108,687 - Xcc-8004.2174.1 0.82 -1.0
2,108,744 + Xcc-8004.2174.1 0.85 +0.4
2,108,745 - Xcc-8004.2174.1 0.85 -0.8
2,108,960 - -0.1
2,109,018 + -1.3
2,109,018 + +0.1
2,109,018 + +0.7
2,109,019 - +0.2
2,109,019 - +0.1
2,109,019 - +0.9
2,109,062 - -0.5
2,109,081 - +1.0
2,109,081 - +1.1
2,109,081 - -0.2
2,109,081 - -0.6
2,109,119 - +0.2
2,109,119 - +0.0
2,109,119 - -0.8
2,109,144 + +0.5
2,109,144 + -0.5
2,109,145 - +0.4
2,109,145 - +0.0
2,109,145 - +0.0
2,109,145 - -0.0
2,109,145 - +0.2
2,109,211 + -0.1
2,109,552 + Xcc-8004.2175.1 0.41 +1.9
2,109,552 + Xcc-8004.2175.1 0.41 +0.2
2,109,552 + Xcc-8004.2175.1 0.41 +0.9
2,109,552 + Xcc-8004.2175.1 0.41 +0.4
2,109,553 - Xcc-8004.2175.1 0.42 +0.4
2,110,451 + Xcc-8004.2176.1 0.14 -0.3
2,110,451 + Xcc-8004.2176.1 0.14 +0.1
2,110,451 + Xcc-8004.2176.1 0.14 -1.4
2,110,451 + Xcc-8004.2176.1 0.14 -0.9
2,110,451 + Xcc-8004.2176.1 0.14 +0.1
2,110,451 + Xcc-8004.2176.1 0.14 +0.0
2,110,451 + Xcc-8004.2176.1 0.14 +0.9
2,110,451 + Xcc-8004.2176.1 0.14 -0.3
2,110,452 - Xcc-8004.2176.1 0.14 +1.1
2,110,452 - Xcc-8004.2176.1 0.14 -0.6
2,110,452 - Xcc-8004.2176.1 0.14 -2.0
2,110,452 - Xcc-8004.2176.1 0.14 -1.2
2,110,452 - Xcc-8004.2176.1 0.14 -0.5
2,110,452 - Xcc-8004.2176.1 0.14 -0.5
2,110,679 + Xcc-8004.2176.1 0.23 -1.6
2,110,679 + Xcc-8004.2176.1 0.23 +0.9
2,110,680 - Xcc-8004.2176.1 0.23 -0.2
2,110,862 + Xcc-8004.2176.1 0.30 -0.4
2,110,862 + Xcc-8004.2176.1 0.30 +0.2
2,110,862 + Xcc-8004.2176.1 0.30 -0.3
2,110,862 + Xcc-8004.2176.1 0.30 -1.6
2,110,862 + Xcc-8004.2176.1 0.30 -0.1
2,110,862 + Xcc-8004.2176.1 0.30 -0.6
2,110,862 + Xcc-8004.2176.1 0.30 +0.8
2,110,862 + Xcc-8004.2176.1 0.30 +1.1
2,110,862 + Xcc-8004.2176.1 0.30 -0.7
2,110,862 + Xcc-8004.2176.1 0.30 -0.0
2,110,862 + Xcc-8004.2176.1 0.30 -0.3
2,110,862 + Xcc-8004.2176.1 0.30 +0.4
2,110,862 + Xcc-8004.2176.1 0.30 +0.8
2,110,862 + Xcc-8004.2176.1 0.30 -0.3
2,110,862 + Xcc-8004.2176.1 0.30 +0.5
2,110,862 + Xcc-8004.2176.1 0.30 +0.4
2,110,862 + Xcc-8004.2176.1 0.30 -2.7
2,110,862 + Xcc-8004.2176.1 0.30 -0.6
2,110,863 - Xcc-8004.2176.1 0.30 +0.9
2,110,863 - Xcc-8004.2176.1 0.30 +0.5
2,110,863 - Xcc-8004.2176.1 0.30 -0.3
2,110,863 - Xcc-8004.2176.1 0.30 +0.5
2,110,863 - Xcc-8004.2176.1 0.30 -0.8
2,110,863 - Xcc-8004.2176.1 0.30 -0.1
2,110,863 - Xcc-8004.2176.1 0.30 +0.0
2,110,863 - Xcc-8004.2176.1 0.30 -0.3
2,110,863 - Xcc-8004.2176.1 0.30 +0.2
2,110,863 - Xcc-8004.2176.1 0.30 -0.5
2,110,863 - Xcc-8004.2176.1 0.30 +0.4
2,110,863 - Xcc-8004.2176.1 0.30 -0.8
2,110,863 - Xcc-8004.2176.1 0.30 -0.2
2,110,863 - Xcc-8004.2176.1 0.30 +0.9
2,110,863 - Xcc-8004.2176.1 0.30 -0.3
2,110,863 - Xcc-8004.2176.1 0.30 -0.6
2,110,871 + Xcc-8004.2176.1 0.30 +0.2
2,110,871 + Xcc-8004.2176.1 0.30 +0.4
2,111,085 + Xcc-8004.2176.1 0.39 -0.6

Or see this region's nucleotide sequence