Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2160.1

Experiment: MOKA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOKA
2,087,633	+		Xcc-8004.2159.1	0.64	-1.5
2,087,633	+		Xcc-8004.2159.1	0.64	+0.9
2,087,633	+		Xcc-8004.2159.1	0.64	-0.6
2,087,633	+		Xcc-8004.2159.1	0.64	+0.5
2,087,633	+		Xcc-8004.2159.1	0.64	-0.3
2,087,634	-		Xcc-8004.2159.1	0.64	+0.2
2,087,634	-		Xcc-8004.2159.1	0.64	-1.1
2,087,634	-		Xcc-8004.2159.1	0.64	-0.1
2,087,634	-		Xcc-8004.2159.1	0.64	-0.6
2,087,634	-		Xcc-8004.2159.1	0.64	+1.0
2,087,661	-		Xcc-8004.2159.1	0.66	-0.1
2,087,685	+		Xcc-8004.2159.1	0.67	-0.7
2,087,685	+		Xcc-8004.2159.1	0.67	-1.0
2,087,685	+		Xcc-8004.2159.1	0.67	-0.2
2,087,685	+		Xcc-8004.2159.1	0.67	-0.2
2,087,685	+		Xcc-8004.2159.1	0.67	+0.6
2,087,685	+		Xcc-8004.2159.1	0.67	+0.3
2,087,685	+		Xcc-8004.2159.1	0.67	+0.5
2,087,686	-		Xcc-8004.2159.1	0.67	-0.3
2,087,686	-		Xcc-8004.2159.1	0.67	-0.6
2,087,686	-		Xcc-8004.2159.1	0.67	+0.0
2,087,686	-		Xcc-8004.2159.1	0.67	+1.5
2,087,686	-		Xcc-8004.2159.1	0.67	+0.8
2,087,686	-		Xcc-8004.2159.1	0.67	-0.4
2,087,686	-		Xcc-8004.2159.1	0.67	-0.8
2,087,686	-		Xcc-8004.2159.1	0.67	+0.9
2,087,686	-		Xcc-8004.2159.1	0.67	+0.4
2,087,785	+		Xcc-8004.2159.1	0.72	+0.5
2,087,785	+		Xcc-8004.2159.1	0.72	-0.6
2,087,785	+		Xcc-8004.2159.1	0.72	-1.0
2,087,786	-		Xcc-8004.2159.1	0.73	+0.3
2,087,898	+		Xcc-8004.2159.1	0.79	+0.4
2,087,955	-		Xcc-8004.2159.1	0.82	+0.2
2,087,984	+		Xcc-8004.2159.1	0.83	-0.5
2,087,984	+		Xcc-8004.2159.1	0.83	-1.5
2,087,984	+		Xcc-8004.2159.1	0.83	-1.3
2,087,985	-		Xcc-8004.2159.1	0.83	-0.1
2,087,985	-		Xcc-8004.2159.1	0.83	+1.0
2,088,188	+				-0.9
2,088,188	+				+1.5
2,088,189	-				+0.2
2,088,189	-				-0.3
2,088,189	-				+0.8
2,088,209	+				+0.4
2,088,209	+				+0.2
2,088,210	-				-0.5
2,088,225	+				+0.4
2,088,254	+				-0.0
2,088,254	+				-0.3
2,088,254	+				+0.3
2,088,254	+				-0.1
2,088,254	+				+0.0
2,088,255	-				-0.6
2,088,255	-				-0.3
2,088,255	-				+0.5
2,088,255	-				+1.2
2,088,255	-				-1.2
2,088,255	-				-0.4
2,088,255	-				-0.1
2,088,255	-				+0.7
2,088,255	-				+0.0
2,088,255	-				+1.0
2,088,255	-				+0.1
2,088,255	-				-1.2
2,088,258	+				+0.2
2,088,258	+				+0.8
2,088,258	+				+0.1
2,088,258	+				-1.5
2,088,258	+				+0.0
2,088,258	+				-1.3
2,088,258	+				-0.0
2,088,258	+				+0.1
2,088,258	+				+0.2
2,088,259	-				-0.9
2,088,259	-				-0.8
2,088,259	-				+0.3
2,088,259	-				+0.5
2,088,259	-				+0.1
2,088,259	-				+2.0
2,088,259	-				+1.2
2,088,259	-				+0.0
2,088,259	-				-0.4
2,088,259	-				+0.6
2,088,259	-				-0.5
2,088,259	-				+0.5
2,088,259	-				+1.1
2,088,349	-				-1.3
2,088,349	-				-0.5
2,088,409	-				-0.9
2,088,488	+				-0.3
2,088,488	+				-0.5
2,088,489	-				-0.5
2,088,535	-				+0.1
2,088,535	-				+1.4
2,088,671	+				+0.4
2,088,671	+				+1.1
2,088,671	+				-0.1
2,088,672	-				-0.5
2,088,672	-				+0.2
2,088,708	+		Xcc-8004.2160.1	0.15	-0.0
2,088,708	+		Xcc-8004.2160.1	0.15	-0.3
2,088,710	+		Xcc-8004.2160.1	0.15	-0.9
2,088,710	+		Xcc-8004.2160.1	0.15	-1.0
2,088,710	+		Xcc-8004.2160.1	0.15	-0.5
2,088,711	-		Xcc-8004.2160.1	0.15	-0.2
2,088,711	-		Xcc-8004.2160.1	0.15	-0.4
2,088,711	-		Xcc-8004.2160.1	0.15	-1.3
2,088,711	-		Xcc-8004.2160.1	0.15	-1.2
2,088,711	-		Xcc-8004.2160.1	0.15	+0.9
2,088,711	-		Xcc-8004.2160.1	0.15	+1.0
2,088,711	-		Xcc-8004.2160.1	0.15	-1.0
2,089,124	+		Xcc-8004.2160.1	0.79	+0.1
2,089,328	+				-0.3
2,089,328	+				-0.0
2,089,328	+				+0.1
2,089,328	+				+1.1
2,089,328	+				+1.5
2,089,328	+				-1.3
2,089,328	+				-1.6
2,089,328	+				-0.7
2,089,328	+				+1.3
2,089,328	+				-1.3
2,089,329	-				+0.5
2,089,329	-				+0.9
2,089,329	-				-0.7
2,089,329	-				-0.7
2,089,329	-				-0.7
2,089,329	-				+0.5
2,089,329	-				-0.6
2,089,329	-				-0.2
2,089,329	-				+0.5
2,089,357	+				+0.2
2,089,357	+				+0.4
2,089,357	+				-0.0
2,089,357	+				-0.4
2,089,357	+				-1.2
2,089,357	+				-0.0
2,089,357	+				-0.5
2,089,357	+				-0.0
2,089,357	+				+0.1
2,089,357	+				+0.1
2,089,357	+				+1.3
2,089,357	+				+0.6
2,089,357	+				-0.8
2,089,358	-				+0.8
2,089,358	-				-0.8
2,089,358	-				-0.0
2,089,358	-				-0.5
2,089,358	-				-0.3
2,089,358	-				-1.4
2,089,796	-		Xcc-8004.2161.1	0.16	+0.5
2,089,796	-		Xcc-8004.2161.1	0.16	+0.1
2,089,796	-		Xcc-8004.2161.1	0.16	-0.1
2,090,016	-		Xcc-8004.2161.1	0.24	-0.3
2,090,016	-		Xcc-8004.2161.1	0.24	+0.1
2,090,027	+		Xcc-8004.2161.1	0.25	-1.1
2,090,027	+		Xcc-8004.2161.1	0.25	-0.2
2,090,027	+		Xcc-8004.2161.1	0.25	-0.6
2,090,027	+		Xcc-8004.2161.1	0.25	+0.2
2,090,027	+		Xcc-8004.2161.1	0.25	+0.0
2,090,028	-		Xcc-8004.2161.1	0.25	-1.8
2,090,028	-		Xcc-8004.2161.1	0.25	-0.9
2,090,028	-		Xcc-8004.2161.1	0.25	-1.3
2,090,028	-		Xcc-8004.2161.1	0.25	+0.2
2,090,063	+		Xcc-8004.2161.1	0.26	+0.1
2,090,063	+		Xcc-8004.2161.1	0.26	-0.6
2,090,064	-		Xcc-8004.2161.1	0.26	-0.3
2,090,105	+		Xcc-8004.2161.1	0.28	-1.4
2,090,168	+		Xcc-8004.2161.1	0.30	+0.8
2,090,168	+		Xcc-8004.2161.1	0.30	-1.2
2,090,169	-		Xcc-8004.2161.1	0.30	-1.6
2,090,169	-		Xcc-8004.2161.1	0.30	+0.9
2,090,240	+		Xcc-8004.2161.1	0.33	-0.7
2,090,240	+		Xcc-8004.2161.1	0.33	-0.0
2,090,240	+		Xcc-8004.2161.1	0.33	-0.7
2,090,240	+		Xcc-8004.2161.1	0.33	-1.2
2,090,240	+		Xcc-8004.2161.1	0.33	+0.2
2,090,255	+		Xcc-8004.2161.1	0.33	-0.0
2,090,256	-		Xcc-8004.2161.1	0.34	-0.5