Experiment: MOKA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.2104.1 and Xcc-8004.2105.1 are separated by 37 nucleotides Xcc-8004.2105.1 and Xcc-8004.2106.1 are separated by 76 nucleotides
Xcc-8004.2104.1: Xcc-8004.2104.1 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 2,019,371 to 2,021,164
Xcc-8004.2104.1
Xcc-8004.2105.1: Xcc-8004.2105.1 - FIG01210123: hypothetical protein, at 2,021,202 to 2,021,681
Xcc-8004.2105.1
Xcc-8004.2106.1: Xcc-8004.2106.1 - Outer membrane lipoprotein Blc, at 2,021,758 to 2,022,294
Xcc-8004.2106.1
Position (kb) 2021
2022 Strain fitness (log2 ratio) -2
-1
0
1
2 at 2020.212 kb on + strand, within Xcc-8004.2104.1 at 2020.212 kb on + strand, within Xcc-8004.2104.1 at 2020.213 kb on - strand, within Xcc-8004.2104.1 at 2020.213 kb on - strand, within Xcc-8004.2104.1 at 2020.213 kb on - strand, within Xcc-8004.2104.1 at 2020.230 kb on + strand, within Xcc-8004.2104.1 at 2020.282 kb on + strand, within Xcc-8004.2104.1 at 2020.283 kb on - strand, within Xcc-8004.2104.1 at 2020.294 kb on + strand, within Xcc-8004.2104.1 at 2020.294 kb on + strand, within Xcc-8004.2104.1 at 2020.294 kb on + strand, within Xcc-8004.2104.1 at 2020.294 kb on + strand, within Xcc-8004.2104.1 at 2020.295 kb on - strand, within Xcc-8004.2104.1 at 2020.335 kb on + strand, within Xcc-8004.2104.1 at 2020.335 kb on + strand, within Xcc-8004.2104.1 at 2020.335 kb on + strand, within Xcc-8004.2104.1 at 2020.335 kb on + strand, within Xcc-8004.2104.1 at 2020.336 kb on - strand, within Xcc-8004.2104.1 at 2020.336 kb on - strand, within Xcc-8004.2104.1 at 2020.336 kb on - strand, within Xcc-8004.2104.1 at 2020.596 kb on + strand, within Xcc-8004.2104.1 at 2020.596 kb on + strand, within Xcc-8004.2104.1 at 2020.596 kb on + strand, within Xcc-8004.2104.1 at 2020.596 kb on + strand, within Xcc-8004.2104.1 at 2020.596 kb on + strand, within Xcc-8004.2104.1 at 2020.596 kb on + strand, within Xcc-8004.2104.1 at 2020.596 kb on + strand, within Xcc-8004.2104.1 at 2020.596 kb on + strand, within Xcc-8004.2104.1 at 2020.596 kb on + strand, within Xcc-8004.2104.1 at 2020.596 kb on + strand, within Xcc-8004.2104.1 at 2020.597 kb on - strand, within Xcc-8004.2104.1 at 2020.597 kb on - strand, within Xcc-8004.2104.1 at 2020.597 kb on - strand, within Xcc-8004.2104.1 at 2020.597 kb on - strand, within Xcc-8004.2104.1 at 2020.597 kb on - strand, within Xcc-8004.2104.1 at 2020.597 kb on - strand, within Xcc-8004.2104.1 at 2020.597 kb on - strand, within Xcc-8004.2104.1 at 2020.597 kb on - strand, within Xcc-8004.2104.1 at 2020.914 kb on + strand, within Xcc-8004.2104.1 at 2020.914 kb on + strand, within Xcc-8004.2104.1 at 2020.914 kb on + strand, within Xcc-8004.2104.1 at 2020.914 kb on + strand, within Xcc-8004.2104.1 at 2020.915 kb on - strand, within Xcc-8004.2104.1 at 2020.915 kb on - strand, within Xcc-8004.2104.1 at 2020.915 kb on - strand, within Xcc-8004.2104.1 at 2020.915 kb on - strand, within Xcc-8004.2104.1 at 2020.915 kb on - strand, within Xcc-8004.2104.1 at 2021.074 kb on + strand at 2021.074 kb on + strand at 2021.075 kb on - strand at 2021.075 kb on - strand at 2021.075 kb on - strand at 2021.077 kb on - strand at 2021.118 kb on + strand at 2021.119 kb on - strand at 2021.119 kb on - strand at 2021.119 kb on - strand at 2021.154 kb on + strand at 2021.154 kb on + strand at 2021.154 kb on + strand at 2021.154 kb on + strand at 2021.154 kb on + strand at 2021.154 kb on + strand at 2021.154 kb on + strand at 2021.154 kb on + strand at 2021.155 kb on - strand at 2021.155 kb on - strand at 2021.155 kb on - strand at 2021.155 kb on - strand at 2021.155 kb on - strand at 2021.318 kb on - strand, within Xcc-8004.2105.1 at 2021.318 kb on - strand, within Xcc-8004.2105.1 at 2021.515 kb on + strand, within Xcc-8004.2105.1 at 2021.515 kb on + strand, within Xcc-8004.2105.1 at 2021.515 kb on + strand, within Xcc-8004.2105.1 at 2021.515 kb on + strand, within Xcc-8004.2105.1 at 2021.516 kb on - strand, within Xcc-8004.2105.1 at 2021.516 kb on - strand, within Xcc-8004.2105.1 at 2021.516 kb on - strand, within Xcc-8004.2105.1 at 2021.516 kb on - strand, within Xcc-8004.2105.1 at 2021.516 kb on - strand, within Xcc-8004.2105.1 at 2021.516 kb on - strand, within Xcc-8004.2105.1 at 2021.516 kb on - strand, within Xcc-8004.2105.1 at 2021.516 kb on - strand, within Xcc-8004.2105.1 at 2021.516 kb on - strand, within Xcc-8004.2105.1 at 2021.516 kb on - strand, within Xcc-8004.2105.1 at 2021.516 kb on - strand, within Xcc-8004.2105.1 at 2021.516 kb on - strand, within Xcc-8004.2105.1 at 2021.516 kb on - strand, within Xcc-8004.2105.1 at 2021.720 kb on + strand at 2021.720 kb on + strand at 2021.720 kb on + strand at 2021.720 kb on + strand at 2021.721 kb on - strand at 2021.721 kb on - strand at 2021.721 kb on - strand at 2021.721 kb on - strand at 2021.723 kb on + strand at 2021.723 kb on + strand at 2021.723 kb on + strand at 2021.723 kb on + strand at 2021.724 kb on - strand at 2021.724 kb on - strand at 2021.724 kb on - strand at 2021.724 kb on - strand at 2021.724 kb on - strand at 2021.724 kb on - strand at 2021.724 kb on - strand at 2021.724 kb on - strand at 2021.730 kb on + strand at 2021.730 kb on + strand at 2021.731 kb on - strand at 2021.798 kb on + strand at 2021.799 kb on - strand at 2021.879 kb on + strand, within Xcc-8004.2106.1 at 2021.879 kb on + strand, within Xcc-8004.2106.1 at 2021.879 kb on + strand, within Xcc-8004.2106.1 at 2021.879 kb on + strand, within Xcc-8004.2106.1 at 2021.879 kb on + strand, within Xcc-8004.2106.1 at 2021.880 kb on - strand, within Xcc-8004.2106.1 at 2021.880 kb on - strand, within Xcc-8004.2106.1 at 2021.880 kb on - strand, within Xcc-8004.2106.1 at 2021.880 kb on - strand, within Xcc-8004.2106.1 at 2021.880 kb on - strand, within Xcc-8004.2106.1 at 2021.880 kb on - strand, within Xcc-8004.2106.1 at 2021.916 kb on - strand, within Xcc-8004.2106.1 at 2021.916 kb on - strand, within Xcc-8004.2106.1 at 2021.942 kb on + strand, within Xcc-8004.2106.1 at 2021.942 kb on + strand, within Xcc-8004.2106.1 at 2021.942 kb on + strand, within Xcc-8004.2106.1 at 2021.942 kb on + strand, within Xcc-8004.2106.1 at 2021.942 kb on + strand, within Xcc-8004.2106.1 at 2021.942 kb on + strand, within Xcc-8004.2106.1 at 2021.942 kb on + strand, within Xcc-8004.2106.1 at 2021.943 kb on - strand, within Xcc-8004.2106.1 at 2021.943 kb on - strand, within Xcc-8004.2106.1 at 2021.943 kb on - strand, within Xcc-8004.2106.1 at 2022.113 kb on + strand, within Xcc-8004.2106.1 at 2022.113 kb on + strand, within Xcc-8004.2106.1 at 2022.113 kb on + strand, within Xcc-8004.2106.1 at 2022.113 kb on + strand, within Xcc-8004.2106.1 at 2022.113 kb on + strand, within Xcc-8004.2106.1 at 2022.113 kb on + strand, within Xcc-8004.2106.1 at 2022.113 kb on + strand, within Xcc-8004.2106.1 at 2022.113 kb on + strand, within Xcc-8004.2106.1 at 2022.113 kb on + strand, within Xcc-8004.2106.1 at 2022.113 kb on + strand, within Xcc-8004.2106.1 at 2022.113 kb on + strand, within Xcc-8004.2106.1 at 2022.114 kb on - strand, within Xcc-8004.2106.1 at 2022.114 kb on - strand, within Xcc-8004.2106.1 at 2022.114 kb on - strand, within Xcc-8004.2106.1 at 2022.114 kb on - strand, within Xcc-8004.2106.1 at 2022.114 kb on - strand, within Xcc-8004.2106.1 at 2022.114 kb on - strand, within Xcc-8004.2106.1 at 2022.114 kb on - strand, within Xcc-8004.2106.1 at 2022.114 kb on - strand, within Xcc-8004.2106.1 at 2022.114 kb on - strand, within Xcc-8004.2106.1 at 2022.126 kb on + strand, within Xcc-8004.2106.1 at 2022.126 kb on + strand, within Xcc-8004.2106.1 at 2022.127 kb on - strand, within Xcc-8004.2106.1 at 2022.160 kb on + strand, within Xcc-8004.2106.1 at 2022.160 kb on + strand, within Xcc-8004.2106.1 at 2022.160 kb on + strand, within Xcc-8004.2106.1 at 2022.160 kb on + strand, within Xcc-8004.2106.1 at 2022.160 kb on + strand, within Xcc-8004.2106.1 at 2022.161 kb on - strand, within Xcc-8004.2106.1 at 2022.161 kb on - strand, within Xcc-8004.2106.1 at 2022.161 kb on - strand, within Xcc-8004.2106.1 at 2022.161 kb on - strand, within Xcc-8004.2106.1 at 2022.161 kb on - strand, within Xcc-8004.2106.1 at 2022.161 kb on - strand, within Xcc-8004.2106.1 at 2022.192 kb on - strand, within Xcc-8004.2106.1 at 2022.192 kb on - strand, within Xcc-8004.2106.1 at 2022.201 kb on + strand, within Xcc-8004.2106.1 at 2022.201 kb on + strand, within Xcc-8004.2106.1 at 2022.201 kb on + strand, within Xcc-8004.2106.1 at 2022.202 kb on - strand, within Xcc-8004.2106.1 at 2022.202 kb on - strand, within Xcc-8004.2106.1 at 2022.202 kb on - strand, within Xcc-8004.2106.1 at 2022.322 kb on + strand at 2022.322 kb on + strand at 2022.323 kb on - strand at 2022.323 kb on - strand at 2022.554 kb on + strand at 2022.555 kb on - strand at 2022.555 kb on - strand at 2022.586 kb on + strand at 2022.587 kb on - strand at 2022.587 kb on - strand at 2022.618 kb on + strand at 2022.619 kb on - strand at 2022.619 kb on - strand at 2022.619 kb on - strand at 2022.619 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MOKA remove 2,020,212 + Xcc-8004.2104.1 0.47 -2.2 2,020,212 + Xcc-8004.2104.1 0.47 -0.7 2,020,213 - Xcc-8004.2104.1 0.47 +0.3 2,020,213 - Xcc-8004.2104.1 0.47 +0.1 2,020,213 - Xcc-8004.2104.1 0.47 +0.5 2,020,230 + Xcc-8004.2104.1 0.48 +1.2 2,020,282 + Xcc-8004.2104.1 0.51 +0.3 2,020,283 - Xcc-8004.2104.1 0.51 +0.3 2,020,294 + Xcc-8004.2104.1 0.51 -0.3 2,020,294 + Xcc-8004.2104.1 0.51 +0.4 2,020,294 + Xcc-8004.2104.1 0.51 -1.1 2,020,294 + Xcc-8004.2104.1 0.51 -1.3 2,020,295 - Xcc-8004.2104.1 0.52 +0.4 2,020,335 + Xcc-8004.2104.1 0.54 -0.4 2,020,335 + Xcc-8004.2104.1 0.54 +0.5 2,020,335 + Xcc-8004.2104.1 0.54 +0.7 2,020,335 + Xcc-8004.2104.1 0.54 -0.4 2,020,336 - Xcc-8004.2104.1 0.54 -0.8 2,020,336 - Xcc-8004.2104.1 0.54 -0.7 2,020,336 - Xcc-8004.2104.1 0.54 +0.2 2,020,596 + Xcc-8004.2104.1 0.68 -0.3 2,020,596 + Xcc-8004.2104.1 0.68 -0.2 2,020,596 + Xcc-8004.2104.1 0.68 -1.2 2,020,596 + Xcc-8004.2104.1 0.68 -0.5 2,020,596 + Xcc-8004.2104.1 0.68 +0.5 2,020,596 + Xcc-8004.2104.1 0.68 +0.6 2,020,596 + Xcc-8004.2104.1 0.68 +1.4 2,020,596 + Xcc-8004.2104.1 0.68 +1.5 2,020,596 + Xcc-8004.2104.1 0.68 +1.2 2,020,596 + Xcc-8004.2104.1 0.68 +0.1 2,020,597 - Xcc-8004.2104.1 0.68 -0.3 2,020,597 - Xcc-8004.2104.1 0.68 -0.2 2,020,597 - Xcc-8004.2104.1 0.68 -0.4 2,020,597 - Xcc-8004.2104.1 0.68 +1.2 2,020,597 - Xcc-8004.2104.1 0.68 +0.0 2,020,597 - Xcc-8004.2104.1 0.68 -1.8 2,020,597 - Xcc-8004.2104.1 0.68 -1.1 2,020,597 - Xcc-8004.2104.1 0.68 -0.1 2,020,914 + Xcc-8004.2104.1 0.86 -1.9 2,020,914 + Xcc-8004.2104.1 0.86 +1.3 2,020,914 + Xcc-8004.2104.1 0.86 +0.5 2,020,914 + Xcc-8004.2104.1 0.86 -1.1 2,020,915 - Xcc-8004.2104.1 0.86 -1.6 2,020,915 - Xcc-8004.2104.1 0.86 -0.9 2,020,915 - Xcc-8004.2104.1 0.86 +0.1 2,020,915 - Xcc-8004.2104.1 0.86 -2.3 2,020,915 - Xcc-8004.2104.1 0.86 +0.6 2,021,074 + -0.2 2,021,074 + -0.3 2,021,075 - -0.1 2,021,075 - +0.1 2,021,075 - +0.9 2,021,077 - -0.7 2,021,118 + -0.6 2,021,119 - -0.1 2,021,119 - -0.4 2,021,119 - -2.1 2,021,154 + +0.4 2,021,154 + -0.2 2,021,154 + -1.3 2,021,154 + +1.3 2,021,154 + +0.1 2,021,154 + -0.6 2,021,154 + +0.9 2,021,154 + -0.8 2,021,155 - +1.1 2,021,155 - +0.2 2,021,155 - +0.6 2,021,155 - +1.5 2,021,155 - +0.1 2,021,318 - Xcc-8004.2105.1 0.24 +0.0 2,021,318 - Xcc-8004.2105.1 0.24 -0.8 2,021,515 + Xcc-8004.2105.1 0.65 +0.1 2,021,515 + Xcc-8004.2105.1 0.65 -1.1 2,021,515 + Xcc-8004.2105.1 0.65 +0.4 2,021,515 + Xcc-8004.2105.1 0.65 -1.1 2,021,516 - Xcc-8004.2105.1 0.65 -0.5 2,021,516 - Xcc-8004.2105.1 0.65 -1.2 2,021,516 - Xcc-8004.2105.1 0.65 -1.2 2,021,516 - Xcc-8004.2105.1 0.65 -0.1 2,021,516 - Xcc-8004.2105.1 0.65 -0.9 2,021,516 - Xcc-8004.2105.1 0.65 -1.1 2,021,516 - Xcc-8004.2105.1 0.65 -0.2 2,021,516 - Xcc-8004.2105.1 0.65 -1.2 2,021,516 - Xcc-8004.2105.1 0.65 -0.4 2,021,516 - Xcc-8004.2105.1 0.65 +0.5 2,021,516 - Xcc-8004.2105.1 0.65 -1.5 2,021,516 - Xcc-8004.2105.1 0.65 -0.3 2,021,516 - Xcc-8004.2105.1 0.65 -0.2 2,021,720 + +0.0 2,021,720 + +2.1 2,021,720 + -1.1 2,021,720 + +0.6 2,021,721 - -0.4 2,021,721 - -1.9 2,021,721 - -0.4 2,021,721 - -0.6 2,021,723 + -0.8 2,021,723 + -0.9 2,021,723 + +0.6 2,021,723 + +0.5 2,021,724 - +0.2 2,021,724 - -1.9 2,021,724 - -0.8 2,021,724 - +0.0 2,021,724 - +0.7 2,021,724 - +0.6 2,021,724 - -0.1 2,021,724 - -0.1 2,021,730 + +0.9 2,021,730 + +0.4 2,021,731 - -1.2 2,021,798 + -0.7 2,021,799 - +1.3 2,021,879 + Xcc-8004.2106.1 0.23 +0.4 2,021,879 + Xcc-8004.2106.1 0.23 -0.5 2,021,879 + Xcc-8004.2106.1 0.23 -0.9 2,021,879 + Xcc-8004.2106.1 0.23 -1.4 2,021,879 + Xcc-8004.2106.1 0.23 +0.6 2,021,880 - Xcc-8004.2106.1 0.23 -1.5 2,021,880 - Xcc-8004.2106.1 0.23 -0.8 2,021,880 - Xcc-8004.2106.1 0.23 -0.2 2,021,880 - Xcc-8004.2106.1 0.23 -0.7 2,021,880 - Xcc-8004.2106.1 0.23 -1.8 2,021,880 - Xcc-8004.2106.1 0.23 +0.3 2,021,916 - Xcc-8004.2106.1 0.29 -0.7 2,021,916 - Xcc-8004.2106.1 0.29 -0.6 2,021,942 + Xcc-8004.2106.1 0.34 -0.1 2,021,942 + Xcc-8004.2106.1 0.34 -0.4 2,021,942 + Xcc-8004.2106.1 0.34 -0.2 2,021,942 + Xcc-8004.2106.1 0.34 +1.5 2,021,942 + Xcc-8004.2106.1 0.34 -0.3 2,021,942 + Xcc-8004.2106.1 0.34 -1.0 2,021,942 + Xcc-8004.2106.1 0.34 +0.2 2,021,943 - Xcc-8004.2106.1 0.34 -0.2 2,021,943 - Xcc-8004.2106.1 0.34 +0.3 2,021,943 - Xcc-8004.2106.1 0.34 -1.3 2,022,113 + Xcc-8004.2106.1 0.66 +1.0 2,022,113 + Xcc-8004.2106.1 0.66 +0.7 2,022,113 + Xcc-8004.2106.1 0.66 +0.4 2,022,113 + Xcc-8004.2106.1 0.66 +0.6 2,022,113 + Xcc-8004.2106.1 0.66 -0.2 2,022,113 + Xcc-8004.2106.1 0.66 +0.8 2,022,113 + Xcc-8004.2106.1 0.66 -0.4 2,022,113 + Xcc-8004.2106.1 0.66 -0.4 2,022,113 + Xcc-8004.2106.1 0.66 +0.1 2,022,113 + Xcc-8004.2106.1 0.66 +0.4 2,022,113 + Xcc-8004.2106.1 0.66 +1.2 2,022,114 - Xcc-8004.2106.1 0.66 -0.5 2,022,114 - Xcc-8004.2106.1 0.66 -0.6 2,022,114 - Xcc-8004.2106.1 0.66 +0.1 2,022,114 - Xcc-8004.2106.1 0.66 -0.8 2,022,114 - Xcc-8004.2106.1 0.66 -0.3 2,022,114 - Xcc-8004.2106.1 0.66 +0.0 2,022,114 - Xcc-8004.2106.1 0.66 +0.2 2,022,114 - Xcc-8004.2106.1 0.66 -0.7 2,022,114 - Xcc-8004.2106.1 0.66 +0.3 2,022,126 + Xcc-8004.2106.1 0.69 -0.5 2,022,126 + Xcc-8004.2106.1 0.69 +0.2 2,022,127 - Xcc-8004.2106.1 0.69 +0.3 2,022,160 + Xcc-8004.2106.1 0.75 -0.0 2,022,160 + Xcc-8004.2106.1 0.75 +0.2 2,022,160 + Xcc-8004.2106.1 0.75 -0.3 2,022,160 + Xcc-8004.2106.1 0.75 -0.1 2,022,160 + Xcc-8004.2106.1 0.75 +0.1 2,022,161 - Xcc-8004.2106.1 0.75 +0.0 2,022,161 - Xcc-8004.2106.1 0.75 +0.2 2,022,161 - Xcc-8004.2106.1 0.75 -1.1 2,022,161 - Xcc-8004.2106.1 0.75 -1.9 2,022,161 - Xcc-8004.2106.1 0.75 -0.7 2,022,161 - Xcc-8004.2106.1 0.75 +0.6 2,022,192 - Xcc-8004.2106.1 0.81 +0.5 2,022,192 - Xcc-8004.2106.1 0.81 -0.6 2,022,201 + Xcc-8004.2106.1 0.82 +0.7 2,022,201 + Xcc-8004.2106.1 0.82 -0.2 2,022,201 + Xcc-8004.2106.1 0.82 +0.7 2,022,202 - Xcc-8004.2106.1 0.83 -0.6 2,022,202 - Xcc-8004.2106.1 0.83 -0.1 2,022,202 - Xcc-8004.2106.1 0.83 -0.6 2,022,322 + -0.0 2,022,322 + +0.9 2,022,323 - +0.9 2,022,323 - -0.5 2,022,554 + +0.4 2,022,555 - -0.4 2,022,555 - -0.7 2,022,586 + +0.3 2,022,587 - -0.9 2,022,587 - +0.7 2,022,618 + -0.1 2,022,619 - -0.7 2,022,619 - +0.3 2,022,619 - -0.2 2,022,619 - -0.9
Or see this region's nucleotide sequence