Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1826.1

Experiment: MOKA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1824.1 and Xcc-8004.1825.1 are separated by 161 nucleotidesXcc-8004.1825.1 and Xcc-8004.1826.1 are separated by 108 nucleotidesXcc-8004.1826.1 and Xcc-8004.1827.1 are separated by 175 nucleotides Xcc-8004.1824.1: Xcc-8004.1824.1 - Zinc-regulated outer membrane receptor, at 1,759,165 to 1,761,231 Xcc-8004.1824.1 Xcc-8004.1825.1: Xcc-8004.1825.1 - FIG01210006: hypothetical protein, at 1,761,393 to 1,761,809 Xcc-8004.1825.1 Xcc-8004.1826.1: Xcc-8004.1826.1 - FIG01217340: hypothetical protein, at 1,761,918 to 1,762,100 Xcc-8004.1826.1 Xcc-8004.1827.1: Xcc-8004.1827.1 - chloride channel, at 1,762,276 to 1,763,640 Xcc-8004.1827.1 Position (kb) 1761 1762 1763Strain fitness (log2 ratio) -2 -1 0 1at 1761.060 kb on + strandat 1761.247 kb on - strandat 1761.594 kb on + strand, within Xcc-8004.1825.1at 1761.669 kb on + strand, within Xcc-8004.1825.1at 1761.669 kb on + strand, within Xcc-8004.1825.1at 1761.669 kb on + strand, within Xcc-8004.1825.1at 1761.669 kb on + strand, within Xcc-8004.1825.1at 1761.669 kb on + strand, within Xcc-8004.1825.1at 1761.670 kb on - strand, within Xcc-8004.1825.1at 1761.670 kb on - strand, within Xcc-8004.1825.1at 1761.670 kb on - strand, within Xcc-8004.1825.1at 1761.670 kb on - strand, within Xcc-8004.1825.1at 1761.695 kb on - strand, within Xcc-8004.1825.1at 1761.821 kb on + strandat 1761.821 kb on + strandat 1761.821 kb on + strandat 1761.821 kb on + strandat 1761.821 kb on + strandat 1761.821 kb on + strandat 1761.822 kb on - strandat 1761.822 kb on - strandat 1761.822 kb on - strandat 1761.857 kb on + strandat 1761.858 kb on - strandat 1761.894 kb on + strandat 1761.894 kb on + strandat 1761.895 kb on - strandat 1761.895 kb on - strandat 1761.895 kb on - strandat 1761.895 kb on - strandat 1761.895 kb on - strandat 1761.895 kb on - strandat 1761.923 kb on + strandat 1761.924 kb on - strandat 1761.958 kb on - strand, within Xcc-8004.1826.1at 1761.970 kb on - strand, within Xcc-8004.1826.1at 1762.042 kb on + strand, within Xcc-8004.1826.1at 1762.042 kb on + strand, within Xcc-8004.1826.1at 1762.043 kb on - strand, within Xcc-8004.1826.1at 1762.150 kb on + strandat 1762.151 kb on - strandat 1762.151 kb on - strandat 1762.244 kb on + strandat 1762.244 kb on + strandat 1762.311 kb on + strandat 1762.376 kb on + strandat 1762.376 kb on + strandat 1762.376 kb on + strandat 1762.480 kb on + strand, within Xcc-8004.1827.1at 1762.481 kb on - strand, within Xcc-8004.1827.1at 1762.520 kb on + strand, within Xcc-8004.1827.1at 1762.520 kb on + strand, within Xcc-8004.1827.1at 1762.521 kb on - strand, within Xcc-8004.1827.1at 1762.649 kb on + strand, within Xcc-8004.1827.1at 1762.649 kb on + strand, within Xcc-8004.1827.1at 1762.649 kb on + strand, within Xcc-8004.1827.1at 1762.649 kb on + strand, within Xcc-8004.1827.1at 1762.649 kb on + strand, within Xcc-8004.1827.1at 1762.649 kb on + strand, within Xcc-8004.1827.1at 1762.650 kb on - strand, within Xcc-8004.1827.1at 1762.650 kb on - strand, within Xcc-8004.1827.1at 1762.650 kb on - strand, within Xcc-8004.1827.1at 1762.921 kb on + strand, within Xcc-8004.1827.1at 1762.921 kb on + strand, within Xcc-8004.1827.1at 1762.922 kb on - strand, within Xcc-8004.1827.1at 1762.979 kb on + strand, within Xcc-8004.1827.1at 1762.979 kb on + strand, within Xcc-8004.1827.1at 1762.979 kb on + strand, within Xcc-8004.1827.1at 1762.979 kb on + strand, within Xcc-8004.1827.1at 1762.979 kb on + strand, within Xcc-8004.1827.1at 1762.980 kb on - strand, within Xcc-8004.1827.1at 1762.980 kb on - strand, within Xcc-8004.1827.1at 1762.980 kb on - strand, within Xcc-8004.1827.1at 1762.980 kb on - strand, within Xcc-8004.1827.1at 1762.980 kb on - strand, within Xcc-8004.1827.1at 1762.980 kb on - strand, within Xcc-8004.1827.1at 1762.985 kb on + strand, within Xcc-8004.1827.1at 1762.985 kb on + strand, within Xcc-8004.1827.1at 1762.985 kb on + strand, within Xcc-8004.1827.1at 1762.985 kb on + strand, within Xcc-8004.1827.1at 1762.985 kb on + strand, within Xcc-8004.1827.1at 1762.985 kb on + strand, within Xcc-8004.1827.1at 1762.985 kb on + strand, within Xcc-8004.1827.1at 1762.985 kb on + strand, within Xcc-8004.1827.1at 1762.985 kb on + strand, within Xcc-8004.1827.1at 1762.985 kb on + strand, within Xcc-8004.1827.1at 1762.985 kb on + strand, within Xcc-8004.1827.1at 1762.985 kb on + strand, within Xcc-8004.1827.1at 1762.985 kb on + strand, within Xcc-8004.1827.1at 1762.985 kb on + strand, within Xcc-8004.1827.1at 1762.985 kb on + strand, within Xcc-8004.1827.1at 1762.985 kb on + strand, within Xcc-8004.1827.1at 1762.985 kb on + strand, within Xcc-8004.1827.1at 1762.985 kb on + strand, within Xcc-8004.1827.1at 1762.986 kb on - strand, within Xcc-8004.1827.1at 1762.986 kb on - strand, within Xcc-8004.1827.1at 1762.986 kb on - strand, within Xcc-8004.1827.1at 1762.986 kb on - strand, within Xcc-8004.1827.1at 1762.986 kb on - strand, within Xcc-8004.1827.1at 1762.986 kb on - strand, within Xcc-8004.1827.1at 1762.986 kb on - strand, within Xcc-8004.1827.1at 1762.986 kb on - strand, within Xcc-8004.1827.1at 1762.986 kb on - strand, within Xcc-8004.1827.1at 1762.986 kb on - strand, within Xcc-8004.1827.1at 1762.986 kb on - strand, within Xcc-8004.1827.1

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Per-strain Table

Position Strand Gene LocusTag Fraction MOKA
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1,761,060 + -0.3
1,761,247 - -0.2
1,761,594 + Xcc-8004.1825.1 0.48 -0.8
1,761,669 + Xcc-8004.1825.1 0.66 +0.7
1,761,669 + Xcc-8004.1825.1 0.66 -0.5
1,761,669 + Xcc-8004.1825.1 0.66 -0.9
1,761,669 + Xcc-8004.1825.1 0.66 +0.9
1,761,669 + Xcc-8004.1825.1 0.66 +0.2
1,761,670 - Xcc-8004.1825.1 0.66 +0.2
1,761,670 - Xcc-8004.1825.1 0.66 +0.5
1,761,670 - Xcc-8004.1825.1 0.66 -0.8
1,761,670 - Xcc-8004.1825.1 0.66 -0.7
1,761,695 - Xcc-8004.1825.1 0.72 -1.8
1,761,821 + +0.1
1,761,821 + +0.4
1,761,821 + +1.4
1,761,821 + -1.4
1,761,821 + +1.1
1,761,821 + -0.5
1,761,822 - -1.0
1,761,822 - -0.6
1,761,822 - +0.7
1,761,857 + +0.5
1,761,858 - +0.7
1,761,894 + +0.6
1,761,894 + -0.7
1,761,895 - +0.1
1,761,895 - -0.0
1,761,895 - -0.2
1,761,895 - +0.0
1,761,895 - +0.2
1,761,895 - -0.0
1,761,923 + -0.9
1,761,924 - +0.7
1,761,958 - Xcc-8004.1826.1 0.22 -0.5
1,761,970 - Xcc-8004.1826.1 0.28 -0.0
1,762,042 + Xcc-8004.1826.1 0.68 +1.1
1,762,042 + Xcc-8004.1826.1 0.68 +0.2
1,762,043 - Xcc-8004.1826.1 0.68 +0.5
1,762,150 + -0.2
1,762,151 - +0.1
1,762,151 - -0.5
1,762,244 + -0.1
1,762,244 + -0.5
1,762,311 + -0.0
1,762,376 + +0.6
1,762,376 + -0.2
1,762,376 + +0.1
1,762,480 + Xcc-8004.1827.1 0.15 -0.5
1,762,481 - Xcc-8004.1827.1 0.15 +0.7
1,762,520 + Xcc-8004.1827.1 0.18 +0.4
1,762,520 + Xcc-8004.1827.1 0.18 +0.4
1,762,521 - Xcc-8004.1827.1 0.18 -0.1
1,762,649 + Xcc-8004.1827.1 0.27 -0.2
1,762,649 + Xcc-8004.1827.1 0.27 -1.0
1,762,649 + Xcc-8004.1827.1 0.27 +0.4
1,762,649 + Xcc-8004.1827.1 0.27 -0.6
1,762,649 + Xcc-8004.1827.1 0.27 -0.2
1,762,649 + Xcc-8004.1827.1 0.27 -0.4
1,762,650 - Xcc-8004.1827.1 0.27 -0.3
1,762,650 - Xcc-8004.1827.1 0.27 -0.5
1,762,650 - Xcc-8004.1827.1 0.27 -0.1
1,762,921 + Xcc-8004.1827.1 0.47 +0.7
1,762,921 + Xcc-8004.1827.1 0.47 -0.0
1,762,922 - Xcc-8004.1827.1 0.47 +0.4
1,762,979 + Xcc-8004.1827.1 0.52 +0.6
1,762,979 + Xcc-8004.1827.1 0.52 +0.2
1,762,979 + Xcc-8004.1827.1 0.52 -0.8
1,762,979 + Xcc-8004.1827.1 0.52 +0.0
1,762,979 + Xcc-8004.1827.1 0.52 +0.5
1,762,980 - Xcc-8004.1827.1 0.52 -0.8
1,762,980 - Xcc-8004.1827.1 0.52 -0.3
1,762,980 - Xcc-8004.1827.1 0.52 +0.2
1,762,980 - Xcc-8004.1827.1 0.52 -0.9
1,762,980 - Xcc-8004.1827.1 0.52 -2.0
1,762,980 - Xcc-8004.1827.1 0.52 +1.1
1,762,985 + Xcc-8004.1827.1 0.52 +0.1
1,762,985 + Xcc-8004.1827.1 0.52 -0.4
1,762,985 + Xcc-8004.1827.1 0.52 -1.6
1,762,985 + Xcc-8004.1827.1 0.52 +0.5
1,762,985 + Xcc-8004.1827.1 0.52 -0.2
1,762,985 + Xcc-8004.1827.1 0.52 -0.1
1,762,985 + Xcc-8004.1827.1 0.52 -0.7
1,762,985 + Xcc-8004.1827.1 0.52 +0.6
1,762,985 + Xcc-8004.1827.1 0.52 -0.3
1,762,985 + Xcc-8004.1827.1 0.52 +0.8
1,762,985 + Xcc-8004.1827.1 0.52 +0.7
1,762,985 + Xcc-8004.1827.1 0.52 +0.3
1,762,985 + Xcc-8004.1827.1 0.52 +0.2
1,762,985 + Xcc-8004.1827.1 0.52 -0.3
1,762,985 + Xcc-8004.1827.1 0.52 +0.6
1,762,985 + Xcc-8004.1827.1 0.52 -1.6
1,762,985 + Xcc-8004.1827.1 0.52 -0.6
1,762,985 + Xcc-8004.1827.1 0.52 +1.3
1,762,986 - Xcc-8004.1827.1 0.52 -0.1
1,762,986 - Xcc-8004.1827.1 0.52 +0.2
1,762,986 - Xcc-8004.1827.1 0.52 -0.1
1,762,986 - Xcc-8004.1827.1 0.52 +0.4
1,762,986 - Xcc-8004.1827.1 0.52 +0.5
1,762,986 - Xcc-8004.1827.1 0.52 -0.1
1,762,986 - Xcc-8004.1827.1 0.52 -0.1
1,762,986 - Xcc-8004.1827.1 0.52 +0.8
1,762,986 - Xcc-8004.1827.1 0.52 +0.8
1,762,986 - Xcc-8004.1827.1 0.52 -0.4
1,762,986 - Xcc-8004.1827.1 0.52 +0.0

Or see this region's nucleotide sequence