Experiment: MOKA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1803.1 and Xcc-8004.1804.1 overlap by 25 nucleotides Xcc-8004.1804.1 and Xcc-8004.1805.1 are separated by 172 nucleotides
Xcc-8004.1803.1: Xcc-8004.1803.1 - extracellular serine protease, at 1,739,184 to 1,740,887
Xcc-8004.1803.1
Xcc-8004.1804.1: Xcc-8004.1804.1 - hypothetical protein, at 1,740,863 to 1,741,468
Xcc-8004.1804.1
Xcc-8004.1805.1: Xcc-8004.1805.1 - Transcriptional regulator, LysR family, at 1,741,641 to 1,742,573
Xcc-8004.1805.1
Position (kb) 1740
1741
1742 Strain fitness (log2 ratio) -2
-1
0
1 at 1740.141 kb on - strand, within Xcc-8004.1803.1 at 1740.245 kb on + strand, within Xcc-8004.1803.1 at 1740.246 kb on - strand, within Xcc-8004.1803.1 at 1740.274 kb on + strand, within Xcc-8004.1803.1 at 1740.274 kb on + strand, within Xcc-8004.1803.1 at 1740.274 kb on + strand, within Xcc-8004.1803.1 at 1740.274 kb on + strand, within Xcc-8004.1803.1 at 1740.275 kb on - strand, within Xcc-8004.1803.1 at 1740.275 kb on - strand, within Xcc-8004.1803.1 at 1740.275 kb on - strand, within Xcc-8004.1803.1 at 1740.275 kb on - strand, within Xcc-8004.1803.1 at 1740.275 kb on - strand, within Xcc-8004.1803.1 at 1740.275 kb on - strand, within Xcc-8004.1803.1 at 1740.353 kb on - strand, within Xcc-8004.1803.1 at 1740.353 kb on - strand, within Xcc-8004.1803.1 at 1740.356 kb on - strand, within Xcc-8004.1803.1 at 1740.381 kb on - strand, within Xcc-8004.1803.1 at 1740.388 kb on - strand, within Xcc-8004.1803.1 at 1740.388 kb on - strand, within Xcc-8004.1803.1 at 1740.667 kb on - strand, within Xcc-8004.1803.1 at 1740.699 kb on + strand, within Xcc-8004.1803.1 at 1740.909 kb on + strand at 1740.909 kb on + strand at 1741.060 kb on + strand, within Xcc-8004.1804.1 at 1741.060 kb on + strand, within Xcc-8004.1804.1 at 1741.125 kb on + strand, within Xcc-8004.1804.1 at 1741.206 kb on - strand, within Xcc-8004.1804.1 at 1741.234 kb on + strand, within Xcc-8004.1804.1 at 1741.235 kb on - strand, within Xcc-8004.1804.1 at 1741.279 kb on + strand, within Xcc-8004.1804.1 at 1741.284 kb on - strand, within Xcc-8004.1804.1 at 1741.395 kb on + strand, within Xcc-8004.1804.1 at 1741.395 kb on + strand, within Xcc-8004.1804.1 at 1741.395 kb on + strand, within Xcc-8004.1804.1 at 1741.473 kb on + strand at 1741.473 kb on + strand at 1741.473 kb on + strand at 1741.473 kb on + strand at 1741.474 kb on - strand at 1741.474 kb on - strand at 1741.474 kb on - strand at 1741.474 kb on - strand at 1741.479 kb on + strand at 1741.480 kb on - strand at 1741.589 kb on + strand at 1741.589 kb on + strand at 1741.589 kb on + strand at 1741.590 kb on - strand at 1741.617 kb on + strand at 1741.618 kb on - strand at 1741.618 kb on - strand at 1741.664 kb on + strand at 1741.938 kb on + strand, within Xcc-8004.1805.1 at 1741.938 kb on + strand, within Xcc-8004.1805.1 at 1741.939 kb on - strand, within Xcc-8004.1805.1 at 1742.257 kb on + strand, within Xcc-8004.1805.1 at 1742.257 kb on + strand, within Xcc-8004.1805.1 at 1742.258 kb on - strand, within Xcc-8004.1805.1 at 1742.258 kb on - strand, within Xcc-8004.1805.1 at 1742.258 kb on - strand, within Xcc-8004.1805.1
Per-strain Table
Position Strand Gene LocusTag Fraction MOKA remove 1,740,141 - Xcc-8004.1803.1 0.56 -0.7 1,740,245 + Xcc-8004.1803.1 0.62 -1.2 1,740,246 - Xcc-8004.1803.1 0.62 -0.9 1,740,274 + Xcc-8004.1803.1 0.64 +0.4 1,740,274 + Xcc-8004.1803.1 0.64 -0.3 1,740,274 + Xcc-8004.1803.1 0.64 +1.1 1,740,274 + Xcc-8004.1803.1 0.64 -0.1 1,740,275 - Xcc-8004.1803.1 0.64 -0.3 1,740,275 - Xcc-8004.1803.1 0.64 -0.0 1,740,275 - Xcc-8004.1803.1 0.64 -0.9 1,740,275 - Xcc-8004.1803.1 0.64 -0.5 1,740,275 - Xcc-8004.1803.1 0.64 +0.6 1,740,275 - Xcc-8004.1803.1 0.64 +0.4 1,740,353 - Xcc-8004.1803.1 0.69 -0.2 1,740,353 - Xcc-8004.1803.1 0.69 -0.1 1,740,356 - Xcc-8004.1803.1 0.69 -0.0 1,740,381 - Xcc-8004.1803.1 0.70 +0.3 1,740,388 - Xcc-8004.1803.1 0.71 +0.6 1,740,388 - Xcc-8004.1803.1 0.71 -0.5 1,740,667 - Xcc-8004.1803.1 0.87 -0.6 1,740,699 + Xcc-8004.1803.1 0.89 -0.1 1,740,909 + +0.2 1,740,909 + +0.7 1,741,060 + Xcc-8004.1804.1 0.33 -1.2 1,741,060 + Xcc-8004.1804.1 0.33 -1.5 1,741,125 + Xcc-8004.1804.1 0.43 +0.6 1,741,206 - Xcc-8004.1804.1 0.57 +1.5 1,741,234 + Xcc-8004.1804.1 0.61 +1.5 1,741,235 - Xcc-8004.1804.1 0.61 +0.1 1,741,279 + Xcc-8004.1804.1 0.69 +0.2 1,741,284 - Xcc-8004.1804.1 0.69 +0.3 1,741,395 + Xcc-8004.1804.1 0.88 +0.4 1,741,395 + Xcc-8004.1804.1 0.88 +0.5 1,741,395 + Xcc-8004.1804.1 0.88 +0.6 1,741,473 + -0.3 1,741,473 + -1.9 1,741,473 + -0.1 1,741,473 + +0.1 1,741,474 - -1.1 1,741,474 - +0.5 1,741,474 - +0.2 1,741,474 - +0.4 1,741,479 + -0.3 1,741,480 - +0.0 1,741,589 + -0.6 1,741,589 + +0.4 1,741,589 + -0.2 1,741,590 - +0.2 1,741,617 + +1.2 1,741,618 - -0.6 1,741,618 - -0.8 1,741,664 + -1.3 1,741,938 + Xcc-8004.1805.1 0.32 +0.3 1,741,938 + Xcc-8004.1805.1 0.32 -0.8 1,741,939 - Xcc-8004.1805.1 0.32 -0.3 1,742,257 + Xcc-8004.1805.1 0.66 -1.5 1,742,257 + Xcc-8004.1805.1 0.66 +0.0 1,742,258 - Xcc-8004.1805.1 0.66 -1.5 1,742,258 - Xcc-8004.1805.1 0.66 -0.0 1,742,258 - Xcc-8004.1805.1 0.66 +1.4
Or see this region's nucleotide sequence