Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1802.1

Experiment: MOKA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1800.1 and Xcc-8004.1801.1 are separated by 221 nucleotidesXcc-8004.1801.1 and Xcc-8004.1802.1 are separated by 153 nucleotidesXcc-8004.1802.1 and Xcc-8004.1803.1 are separated by 1 nucleotides Xcc-8004.1800.1: Xcc-8004.1800.1 - hypothetical protein, at 1,737,096 to 1,738,007 Xcc-8004.1800.1 Xcc-8004.1801.1: Xcc-8004.1801.1 - FIG01210636: hypothetical protein, at 1,738,229 to 1,738,438 Xcc-8004.1801.1 Xcc-8004.1802.1: Xcc-8004.1802.1 - FIG01210984: hypothetical protein, at 1,738,592 to 1,739,182 Xcc-8004.1802.1 Xcc-8004.1803.1: Xcc-8004.1803.1 - extracellular serine protease, at 1,739,184 to 1,740,887 Xcc-8004.1803.1 Position (kb) 1738 1739 1740Strain fitness (log2 ratio) -2 -1 0 1at 1737.724 kb on + strand, within Xcc-8004.1800.1at 1737.724 kb on + strand, within Xcc-8004.1800.1at 1737.724 kb on + strand, within Xcc-8004.1800.1at 1737.725 kb on - strand, within Xcc-8004.1800.1at 1737.790 kb on + strand, within Xcc-8004.1800.1at 1737.791 kb on - strand, within Xcc-8004.1800.1at 1737.791 kb on - strand, within Xcc-8004.1800.1at 1737.791 kb on - strand, within Xcc-8004.1800.1at 1737.791 kb on - strand, within Xcc-8004.1800.1at 1737.791 kb on - strand, within Xcc-8004.1800.1at 1737.791 kb on - strand, within Xcc-8004.1800.1at 1737.805 kb on + strand, within Xcc-8004.1800.1at 1737.805 kb on + strand, within Xcc-8004.1800.1at 1737.805 kb on + strand, within Xcc-8004.1800.1at 1737.806 kb on - strand, within Xcc-8004.1800.1at 1737.806 kb on - strand, within Xcc-8004.1800.1at 1737.811 kb on + strand, within Xcc-8004.1800.1at 1737.811 kb on + strand, within Xcc-8004.1800.1at 1737.874 kb on + strand, within Xcc-8004.1800.1at 1737.875 kb on - strand, within Xcc-8004.1800.1at 1737.892 kb on + strand, within Xcc-8004.1800.1at 1737.892 kb on + strand, within Xcc-8004.1800.1at 1737.892 kb on + strand, within Xcc-8004.1800.1at 1737.893 kb on - strand, within Xcc-8004.1800.1at 1737.893 kb on - strand, within Xcc-8004.1800.1at 1737.893 kb on - strand, within Xcc-8004.1800.1at 1737.998 kb on - strandat 1738.059 kb on - strandat 1738.059 kb on - strandat 1738.074 kb on - strandat 1738.094 kb on + strandat 1738.094 kb on + strandat 1738.100 kb on + strandat 1738.109 kb on + strandat 1738.109 kb on + strandat 1738.110 kb on - strandat 1738.110 kb on - strandat 1738.162 kb on + strandat 1738.163 kb on - strandat 1738.196 kb on - strandat 1738.427 kb on - strandat 1738.427 kb on - strandat 1738.432 kb on + strandat 1738.543 kb on - strandat 1738.593 kb on + strandat 1738.668 kb on - strand, within Xcc-8004.1802.1at 1738.791 kb on + strand, within Xcc-8004.1802.1at 1738.791 kb on + strand, within Xcc-8004.1802.1at 1738.791 kb on + strand, within Xcc-8004.1802.1at 1738.791 kb on + strand, within Xcc-8004.1802.1at 1738.792 kb on - strand, within Xcc-8004.1802.1at 1738.792 kb on - strand, within Xcc-8004.1802.1at 1738.888 kb on + strand, within Xcc-8004.1802.1at 1738.927 kb on - strand, within Xcc-8004.1802.1at 1739.014 kb on + strand, within Xcc-8004.1802.1at 1739.014 kb on + strand, within Xcc-8004.1802.1at 1739.014 kb on + strand, within Xcc-8004.1802.1at 1739.015 kb on - strand, within Xcc-8004.1802.1at 1739.015 kb on - strand, within Xcc-8004.1802.1at 1739.015 kb on - strand, within Xcc-8004.1802.1at 1739.022 kb on - strand, within Xcc-8004.1802.1at 1739.345 kb on + strandat 1739.346 kb on - strandat 1739.599 kb on + strand, within Xcc-8004.1803.1at 1739.599 kb on + strand, within Xcc-8004.1803.1at 1739.600 kb on - strand, within Xcc-8004.1803.1at 1739.755 kb on + strand, within Xcc-8004.1803.1at 1739.755 kb on + strand, within Xcc-8004.1803.1at 1739.755 kb on + strand, within Xcc-8004.1803.1at 1739.755 kb on + strand, within Xcc-8004.1803.1at 1739.755 kb on + strand, within Xcc-8004.1803.1at 1739.756 kb on - strand, within Xcc-8004.1803.1at 1739.759 kb on + strand, within Xcc-8004.1803.1at 1739.760 kb on - strand, within Xcc-8004.1803.1at 1739.760 kb on - strand, within Xcc-8004.1803.1at 1739.861 kb on - strand, within Xcc-8004.1803.1at 1740.141 kb on - strand, within Xcc-8004.1803.1

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Per-strain Table

Position Strand Gene LocusTag Fraction MOKA
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1,737,724 + Xcc-8004.1800.1 0.69 -1.6
1,737,724 + Xcc-8004.1800.1 0.69 -0.6
1,737,724 + Xcc-8004.1800.1 0.69 +1.2
1,737,725 - Xcc-8004.1800.1 0.69 +0.9
1,737,790 + Xcc-8004.1800.1 0.76 +0.4
1,737,791 - Xcc-8004.1800.1 0.76 -1.4
1,737,791 - Xcc-8004.1800.1 0.76 -0.3
1,737,791 - Xcc-8004.1800.1 0.76 -2.0
1,737,791 - Xcc-8004.1800.1 0.76 -0.7
1,737,791 - Xcc-8004.1800.1 0.76 -0.2
1,737,791 - Xcc-8004.1800.1 0.76 +0.8
1,737,805 + Xcc-8004.1800.1 0.78 -0.5
1,737,805 + Xcc-8004.1800.1 0.78 -0.1
1,737,805 + Xcc-8004.1800.1 0.78 -0.3
1,737,806 - Xcc-8004.1800.1 0.78 +0.1
1,737,806 - Xcc-8004.1800.1 0.78 -0.3
1,737,811 + Xcc-8004.1800.1 0.78 -1.2
1,737,811 + Xcc-8004.1800.1 0.78 -1.2
1,737,874 + Xcc-8004.1800.1 0.85 +1.1
1,737,875 - Xcc-8004.1800.1 0.85 +0.5
1,737,892 + Xcc-8004.1800.1 0.87 -1.5
1,737,892 + Xcc-8004.1800.1 0.87 -0.3
1,737,892 + Xcc-8004.1800.1 0.87 -0.7
1,737,893 - Xcc-8004.1800.1 0.87 +1.0
1,737,893 - Xcc-8004.1800.1 0.87 +0.4
1,737,893 - Xcc-8004.1800.1 0.87 +0.4
1,737,998 - -0.6
1,738,059 - +1.3
1,738,059 - -1.7
1,738,074 - +0.8
1,738,094 + -0.7
1,738,094 + -0.1
1,738,100 + -0.9
1,738,109 + -0.1
1,738,109 + -1.5
1,738,110 - +0.5
1,738,110 - +0.3
1,738,162 + -0.2
1,738,163 - -0.3
1,738,196 - +0.5
1,738,427 - +0.6
1,738,427 - -1.3
1,738,432 + -0.3
1,738,543 - -1.6
1,738,593 + -0.9
1,738,668 - Xcc-8004.1802.1 0.13 +1.2
1,738,791 + Xcc-8004.1802.1 0.34 -0.1
1,738,791 + Xcc-8004.1802.1 0.34 +0.1
1,738,791 + Xcc-8004.1802.1 0.34 +0.2
1,738,791 + Xcc-8004.1802.1 0.34 +0.5
1,738,792 - Xcc-8004.1802.1 0.34 +0.4
1,738,792 - Xcc-8004.1802.1 0.34 -0.1
1,738,888 + Xcc-8004.1802.1 0.50 +1.0
1,738,927 - Xcc-8004.1802.1 0.57 +0.8
1,739,014 + Xcc-8004.1802.1 0.71 -0.5
1,739,014 + Xcc-8004.1802.1 0.71 -0.7
1,739,014 + Xcc-8004.1802.1 0.71 -0.8
1,739,015 - Xcc-8004.1802.1 0.72 +0.1
1,739,015 - Xcc-8004.1802.1 0.72 +1.4
1,739,015 - Xcc-8004.1802.1 0.72 -0.4
1,739,022 - Xcc-8004.1802.1 0.73 -0.6
1,739,345 + +0.7
1,739,346 - -1.6
1,739,599 + Xcc-8004.1803.1 0.24 +0.4
1,739,599 + Xcc-8004.1803.1 0.24 +0.4
1,739,600 - Xcc-8004.1803.1 0.24 -0.6
1,739,755 + Xcc-8004.1803.1 0.34 +0.3
1,739,755 + Xcc-8004.1803.1 0.34 +0.8
1,739,755 + Xcc-8004.1803.1 0.34 +0.5
1,739,755 + Xcc-8004.1803.1 0.34 -0.4
1,739,755 + Xcc-8004.1803.1 0.34 -0.5
1,739,756 - Xcc-8004.1803.1 0.34 -0.2
1,739,759 + Xcc-8004.1803.1 0.34 -0.2
1,739,760 - Xcc-8004.1803.1 0.34 +0.8
1,739,760 - Xcc-8004.1803.1 0.34 -1.4
1,739,861 - Xcc-8004.1803.1 0.40 +0.3
1,740,141 - Xcc-8004.1803.1 0.56 -0.7

Or see this region's nucleotide sequence