Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.178.1

Experiment: MOKA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.176.1 and Xcc-8004.177.1 overlap by 4 nucleotidesXcc-8004.177.1 and Xcc-8004.178.1 are separated by 252 nucleotidesXcc-8004.178.1 and Xcc-8004.179.1 overlap by 49 nucleotides Xcc-8004.176.1: Xcc-8004.176.1 - Mobile element protein, at 169,557 to 170,981 Xcc-8004.176.1 Xcc-8004.177.1: Xcc-8004.177.1 - RhsD protein, at 170,978 to 171,280 Xcc-8004.177.1 Xcc-8004.178.1: Xcc-8004.178.1 - hypothetical protein, at 171,533 to 171,634 Xcc-8004.178.1 Xcc-8004.179.1: Xcc-8004.179.1 - RhsD protein, at 171,586 to 172,836 Xcc-8004.179.1 Position (kb) 171 172Strain fitness (log2 ratio) -2 -1 0 1 2at 171.011 kb on - strand, within Xcc-8004.177.1at 171.086 kb on - strand, within Xcc-8004.177.1at 171.087 kb on + strand, within Xcc-8004.177.1at 171.088 kb on - strand, within Xcc-8004.177.1at 171.092 kb on - strand, within Xcc-8004.177.1at 171.092 kb on - strand, within Xcc-8004.177.1at 171.130 kb on + strand, within Xcc-8004.177.1at 171.131 kb on - strand, within Xcc-8004.177.1at 171.143 kb on - strand, within Xcc-8004.177.1at 171.151 kb on + strand, within Xcc-8004.177.1at 171.152 kb on - strand, within Xcc-8004.177.1at 171.152 kb on - strand, within Xcc-8004.177.1at 171.159 kb on + strand, within Xcc-8004.177.1at 171.159 kb on + strand, within Xcc-8004.177.1at 171.228 kb on - strand, within Xcc-8004.177.1at 171.275 kb on + strandat 171.276 kb on - strandat 171.304 kb on + strandat 171.305 kb on - strandat 171.305 kb on - strandat 171.305 kb on - strandat 171.392 kb on - strandat 171.406 kb on + strandat 171.406 kb on + strandat 171.407 kb on - strandat 171.410 kb on + strandat 171.410 kb on + strandat 171.422 kb on + strandat 171.422 kb on + strandat 171.423 kb on - strandat 171.441 kb on - strandat 171.465 kb on + strandat 171.506 kb on + strandat 171.507 kb on - strandat 171.507 kb on - strandat 171.532 kb on + strandat 171.532 kb on + strandat 171.532 kb on + strandat 171.533 kb on - strandat 171.533 kb on - strandat 171.533 kb on - strandat 171.536 kb on + strandat 171.536 kb on + strandat 171.536 kb on + strandat 171.536 kb on + strandat 171.536 kb on + strandat 171.537 kb on - strandat 171.537 kb on - strandat 171.537 kb on - strandat 171.537 kb on - strandat 171.548 kb on + strand, within Xcc-8004.178.1at 171.548 kb on + strand, within Xcc-8004.178.1at 171.549 kb on - strand, within Xcc-8004.178.1at 171.673 kb on + strandat 171.674 kb on - strandat 171.736 kb on + strand, within Xcc-8004.179.1at 171.742 kb on + strand, within Xcc-8004.179.1at 171.742 kb on + strand, within Xcc-8004.179.1at 171.742 kb on + strand, within Xcc-8004.179.1at 171.742 kb on + strand, within Xcc-8004.179.1at 171.742 kb on + strand, within Xcc-8004.179.1at 171.742 kb on + strand, within Xcc-8004.179.1at 171.742 kb on + strand, within Xcc-8004.179.1at 171.743 kb on - strand, within Xcc-8004.179.1at 171.743 kb on - strand, within Xcc-8004.179.1at 171.743 kb on - strand, within Xcc-8004.179.1at 171.796 kb on + strand, within Xcc-8004.179.1at 171.796 kb on + strand, within Xcc-8004.179.1at 171.796 kb on + strand, within Xcc-8004.179.1at 171.797 kb on - strand, within Xcc-8004.179.1at 171.797 kb on - strand, within Xcc-8004.179.1at 171.797 kb on - strand, within Xcc-8004.179.1at 171.797 kb on - strand, within Xcc-8004.179.1at 171.797 kb on - strand, within Xcc-8004.179.1at 171.797 kb on - strand, within Xcc-8004.179.1at 171.797 kb on - strand, within Xcc-8004.179.1at 171.797 kb on - strand, within Xcc-8004.179.1at 171.797 kb on - strand, within Xcc-8004.179.1at 171.802 kb on + strand, within Xcc-8004.179.1at 171.802 kb on + strand, within Xcc-8004.179.1at 171.803 kb on - strand, within Xcc-8004.179.1at 171.803 kb on - strand, within Xcc-8004.179.1at 171.803 kb on - strand, within Xcc-8004.179.1at 171.803 kb on - strand, within Xcc-8004.179.1at 171.803 kb on - strand, within Xcc-8004.179.1at 171.803 kb on - strand, within Xcc-8004.179.1at 171.803 kb on - strand, within Xcc-8004.179.1at 171.854 kb on - strand, within Xcc-8004.179.1at 171.854 kb on - strand, within Xcc-8004.179.1at 171.854 kb on - strand, within Xcc-8004.179.1at 171.854 kb on - strand, within Xcc-8004.179.1at 172.060 kb on + strand, within Xcc-8004.179.1at 172.060 kb on + strand, within Xcc-8004.179.1at 172.148 kb on - strand, within Xcc-8004.179.1at 172.148 kb on - strand, within Xcc-8004.179.1at 172.351 kb on + strand, within Xcc-8004.179.1at 172.351 kb on + strand, within Xcc-8004.179.1at 172.352 kb on - strand, within Xcc-8004.179.1at 172.352 kb on - strand, within Xcc-8004.179.1at 172.352 kb on - strand, within Xcc-8004.179.1at 172.352 kb on - strand, within Xcc-8004.179.1at 172.352 kb on - strand, within Xcc-8004.179.1at 172.352 kb on - strand, within Xcc-8004.179.1at 172.364 kb on - strand, within Xcc-8004.179.1at 172.364 kb on - strand, within Xcc-8004.179.1at 172.409 kb on + strand, within Xcc-8004.179.1at 172.410 kb on - strand, within Xcc-8004.179.1at 172.410 kb on - strand, within Xcc-8004.179.1at 172.425 kb on + strand, within Xcc-8004.179.1at 172.426 kb on - strand, within Xcc-8004.179.1at 172.429 kb on + strand, within Xcc-8004.179.1at 172.429 kb on + strand, within Xcc-8004.179.1at 172.429 kb on + strand, within Xcc-8004.179.1at 172.429 kb on + strand, within Xcc-8004.179.1at 172.429 kb on + strand, within Xcc-8004.179.1at 172.429 kb on + strand, within Xcc-8004.179.1at 172.429 kb on + strand, within Xcc-8004.179.1at 172.429 kb on + strand, within Xcc-8004.179.1at 172.429 kb on + strand, within Xcc-8004.179.1at 172.430 kb on - strand, within Xcc-8004.179.1at 172.430 kb on - strand, within Xcc-8004.179.1at 172.430 kb on - strand, within Xcc-8004.179.1at 172.430 kb on - strand, within Xcc-8004.179.1at 172.430 kb on - strand, within Xcc-8004.179.1at 172.430 kb on - strand, within Xcc-8004.179.1at 172.430 kb on - strand, within Xcc-8004.179.1at 172.430 kb on - strand, within Xcc-8004.179.1at 172.430 kb on - strand, within Xcc-8004.179.1at 172.435 kb on + strand, within Xcc-8004.179.1at 172.435 kb on + strand, within Xcc-8004.179.1at 172.436 kb on - strand, within Xcc-8004.179.1at 172.436 kb on - strand, within Xcc-8004.179.1at 172.456 kb on - strand, within Xcc-8004.179.1at 172.463 kb on + strand, within Xcc-8004.179.1at 172.463 kb on + strand, within Xcc-8004.179.1at 172.463 kb on + strand, within Xcc-8004.179.1at 172.464 kb on - strand, within Xcc-8004.179.1at 172.464 kb on - strand, within Xcc-8004.179.1at 172.464 kb on - strand, within Xcc-8004.179.1at 172.464 kb on - strand, within Xcc-8004.179.1at 172.464 kb on - strand, within Xcc-8004.179.1at 172.464 kb on - strand, within Xcc-8004.179.1at 172.464 kb on - strand, within Xcc-8004.179.1at 172.478 kb on + strand, within Xcc-8004.179.1at 172.478 kb on + strand, within Xcc-8004.179.1at 172.478 kb on + strand, within Xcc-8004.179.1at 172.520 kb on + strand, within Xcc-8004.179.1at 172.520 kb on + strand, within Xcc-8004.179.1at 172.520 kb on + strand, within Xcc-8004.179.1at 172.520 kb on + strand, within Xcc-8004.179.1at 172.520 kb on + strand, within Xcc-8004.179.1at 172.520 kb on + strand, within Xcc-8004.179.1at 172.521 kb on - strand, within Xcc-8004.179.1at 172.521 kb on - strand, within Xcc-8004.179.1at 172.521 kb on - strand, within Xcc-8004.179.1at 172.521 kb on - strand, within Xcc-8004.179.1at 172.524 kb on + strand, within Xcc-8004.179.1at 172.524 kb on + strand, within Xcc-8004.179.1at 172.525 kb on - strand, within Xcc-8004.179.1at 172.525 kb on - strand, within Xcc-8004.179.1at 172.525 kb on - strand, within Xcc-8004.179.1at 172.528 kb on + strand, within Xcc-8004.179.1at 172.528 kb on + strand, within Xcc-8004.179.1at 172.528 kb on + strand, within Xcc-8004.179.1at 172.528 kb on + strand, within Xcc-8004.179.1at 172.528 kb on + strand, within Xcc-8004.179.1at 172.528 kb on + strand, within Xcc-8004.179.1at 172.528 kb on + strand, within Xcc-8004.179.1at 172.528 kb on + strand, within Xcc-8004.179.1at 172.528 kb on + strand, within Xcc-8004.179.1at 172.529 kb on - strand, within Xcc-8004.179.1at 172.529 kb on - strand, within Xcc-8004.179.1at 172.529 kb on - strand, within Xcc-8004.179.1at 172.529 kb on - strand, within Xcc-8004.179.1at 172.529 kb on - strand, within Xcc-8004.179.1at 172.529 kb on - strand, within Xcc-8004.179.1at 172.529 kb on - strand, within Xcc-8004.179.1at 172.529 kb on - strand, within Xcc-8004.179.1at 172.529 kb on - strand, within Xcc-8004.179.1at 172.533 kb on + strand, within Xcc-8004.179.1at 172.533 kb on + strand, within Xcc-8004.179.1at 172.534 kb on - strand, within Xcc-8004.179.1at 172.534 kb on - strand, within Xcc-8004.179.1at 172.534 kb on - strand, within Xcc-8004.179.1at 172.534 kb on - strand, within Xcc-8004.179.1at 172.549 kb on - strand, within Xcc-8004.179.1at 172.605 kb on - strand, within Xcc-8004.179.1at 172.605 kb on - strand, within Xcc-8004.179.1at 172.612 kb on - strand, within Xcc-8004.179.1at 172.623 kb on + strand, within Xcc-8004.179.1at 172.624 kb on - strand, within Xcc-8004.179.1at 172.624 kb on - strand, within Xcc-8004.179.1

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Per-strain Table

Position Strand Gene LocusTag Fraction MOKA
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171,011 - Xcc-8004.177.1 0.11 +0.7
171,086 - Xcc-8004.177.1 0.36 -0.3
171,087 + Xcc-8004.177.1 0.36 +0.1
171,088 - Xcc-8004.177.1 0.36 +0.8
171,092 - Xcc-8004.177.1 0.38 -0.6
171,092 - Xcc-8004.177.1 0.38 -1.1
171,130 + Xcc-8004.177.1 0.50 -0.1
171,131 - Xcc-8004.177.1 0.50 -0.7
171,143 - Xcc-8004.177.1 0.54 -1.1
171,151 + Xcc-8004.177.1 0.57 +0.2
171,152 - Xcc-8004.177.1 0.57 +0.2
171,152 - Xcc-8004.177.1 0.57 -0.0
171,159 + Xcc-8004.177.1 0.60 +0.2
171,159 + Xcc-8004.177.1 0.60 -2.3
171,228 - Xcc-8004.177.1 0.83 -0.3
171,275 + +1.5
171,276 - +0.7
171,304 + -0.3
171,305 - -0.8
171,305 - +0.6
171,305 - -0.8
171,392 - +1.3
171,406 + +0.1
171,406 + -1.6
171,407 - +0.6
171,410 + +0.9
171,410 + -0.1
171,422 + -0.7
171,422 + -0.8
171,423 - -0.5
171,441 - -0.9
171,465 + -0.3
171,506 + -0.6
171,507 - -0.1
171,507 - -0.5
171,532 + +0.2
171,532 + +0.5
171,532 + -0.3
171,533 - +0.9
171,533 - -0.5
171,533 - -0.2
171,536 + +0.9
171,536 + +0.2
171,536 + -0.9
171,536 + +0.3
171,536 + +0.2
171,537 - +2.1
171,537 - -0.6
171,537 - -0.4
171,537 - +1.3
171,548 + Xcc-8004.178.1 0.15 +0.3
171,548 + Xcc-8004.178.1 0.15 -0.3
171,549 - Xcc-8004.178.1 0.16 -1.9
171,673 + +0.7
171,674 - -0.7
171,736 + Xcc-8004.179.1 0.12 -0.7
171,742 + Xcc-8004.179.1 0.12 +0.6
171,742 + Xcc-8004.179.1 0.12 -0.2
171,742 + Xcc-8004.179.1 0.12 +0.1
171,742 + Xcc-8004.179.1 0.12 -0.4
171,742 + Xcc-8004.179.1 0.12 -0.2
171,742 + Xcc-8004.179.1 0.12 +0.4
171,742 + Xcc-8004.179.1 0.12 +0.3
171,743 - Xcc-8004.179.1 0.13 -0.8
171,743 - Xcc-8004.179.1 0.13 -0.2
171,743 - Xcc-8004.179.1 0.13 +0.3
171,796 + Xcc-8004.179.1 0.17 +1.4
171,796 + Xcc-8004.179.1 0.17 +1.1
171,796 + Xcc-8004.179.1 0.17 +0.8
171,797 - Xcc-8004.179.1 0.17 -1.4
171,797 - Xcc-8004.179.1 0.17 -0.4
171,797 - Xcc-8004.179.1 0.17 -0.1
171,797 - Xcc-8004.179.1 0.17 +0.0
171,797 - Xcc-8004.179.1 0.17 -0.7
171,797 - Xcc-8004.179.1 0.17 -0.2
171,797 - Xcc-8004.179.1 0.17 -0.5
171,797 - Xcc-8004.179.1 0.17 -0.4
171,797 - Xcc-8004.179.1 0.17 +0.3
171,802 + Xcc-8004.179.1 0.17 -0.3
171,802 + Xcc-8004.179.1 0.17 +0.6
171,803 - Xcc-8004.179.1 0.17 -0.5
171,803 - Xcc-8004.179.1 0.17 +1.1
171,803 - Xcc-8004.179.1 0.17 +0.9
171,803 - Xcc-8004.179.1 0.17 -0.4
171,803 - Xcc-8004.179.1 0.17 -0.3
171,803 - Xcc-8004.179.1 0.17 +1.6
171,803 - Xcc-8004.179.1 0.17 +0.7
171,854 - Xcc-8004.179.1 0.21 +1.1
171,854 - Xcc-8004.179.1 0.21 -0.5
171,854 - Xcc-8004.179.1 0.21 +0.0
171,854 - Xcc-8004.179.1 0.21 -0.8
172,060 + Xcc-8004.179.1 0.38 +0.6
172,060 + Xcc-8004.179.1 0.38 -0.6
172,148 - Xcc-8004.179.1 0.45 +0.7
172,148 - Xcc-8004.179.1 0.45 -0.0
172,351 + Xcc-8004.179.1 0.61 +0.7
172,351 + Xcc-8004.179.1 0.61 +0.0
172,352 - Xcc-8004.179.1 0.61 +0.7
172,352 - Xcc-8004.179.1 0.61 +0.2
172,352 - Xcc-8004.179.1 0.61 +0.2
172,352 - Xcc-8004.179.1 0.61 -0.5
172,352 - Xcc-8004.179.1 0.61 +0.4
172,352 - Xcc-8004.179.1 0.61 -1.6
172,364 - Xcc-8004.179.1 0.62 +0.4
172,364 - Xcc-8004.179.1 0.62 +0.2
172,409 + Xcc-8004.179.1 0.66 +0.7
172,410 - Xcc-8004.179.1 0.66 -1.3
172,410 - Xcc-8004.179.1 0.66 +0.2
172,425 + Xcc-8004.179.1 0.67 -1.2
172,426 - Xcc-8004.179.1 0.67 -1.5
172,429 + Xcc-8004.179.1 0.67 -1.4
172,429 + Xcc-8004.179.1 0.67 +0.2
172,429 + Xcc-8004.179.1 0.67 +0.3
172,429 + Xcc-8004.179.1 0.67 -1.0
172,429 + Xcc-8004.179.1 0.67 +0.2
172,429 + Xcc-8004.179.1 0.67 -0.7
172,429 + Xcc-8004.179.1 0.67 -0.9
172,429 + Xcc-8004.179.1 0.67 -0.7
172,429 + Xcc-8004.179.1 0.67 -1.0
172,430 - Xcc-8004.179.1 0.67 +0.6
172,430 - Xcc-8004.179.1 0.67 -0.3
172,430 - Xcc-8004.179.1 0.67 +0.1
172,430 - Xcc-8004.179.1 0.67 +0.1
172,430 - Xcc-8004.179.1 0.67 -0.0
172,430 - Xcc-8004.179.1 0.67 -0.7
172,430 - Xcc-8004.179.1 0.67 -0.5
172,430 - Xcc-8004.179.1 0.67 -0.9
172,430 - Xcc-8004.179.1 0.67 +1.7
172,435 + Xcc-8004.179.1 0.68 +0.3
172,435 + Xcc-8004.179.1 0.68 -0.5
172,436 - Xcc-8004.179.1 0.68 -1.7
172,436 - Xcc-8004.179.1 0.68 +0.4
172,456 - Xcc-8004.179.1 0.70 +0.7
172,463 + Xcc-8004.179.1 0.70 +0.3
172,463 + Xcc-8004.179.1 0.70 -0.1
172,463 + Xcc-8004.179.1 0.70 -0.4
172,464 - Xcc-8004.179.1 0.70 -0.7
172,464 - Xcc-8004.179.1 0.70 -0.9
172,464 - Xcc-8004.179.1 0.70 -0.7
172,464 - Xcc-8004.179.1 0.70 -0.1
172,464 - Xcc-8004.179.1 0.70 -1.0
172,464 - Xcc-8004.179.1 0.70 -0.0
172,464 - Xcc-8004.179.1 0.70 -0.6
172,478 + Xcc-8004.179.1 0.71 -1.0
172,478 + Xcc-8004.179.1 0.71 -0.5
172,478 + Xcc-8004.179.1 0.71 -0.7
172,520 + Xcc-8004.179.1 0.75 +0.5
172,520 + Xcc-8004.179.1 0.75 -0.5
172,520 + Xcc-8004.179.1 0.75 -0.3
172,520 + Xcc-8004.179.1 0.75 +0.3
172,520 + Xcc-8004.179.1 0.75 -0.9
172,520 + Xcc-8004.179.1 0.75 +0.8
172,521 - Xcc-8004.179.1 0.75 -0.0
172,521 - Xcc-8004.179.1 0.75 -0.7
172,521 - Xcc-8004.179.1 0.75 +0.7
172,521 - Xcc-8004.179.1 0.75 +0.5
172,524 + Xcc-8004.179.1 0.75 -1.3
172,524 + Xcc-8004.179.1 0.75 -0.0
172,525 - Xcc-8004.179.1 0.75 +0.5
172,525 - Xcc-8004.179.1 0.75 +0.4
172,525 - Xcc-8004.179.1 0.75 +2.7
172,528 + Xcc-8004.179.1 0.75 +0.7
172,528 + Xcc-8004.179.1 0.75 -0.7
172,528 + Xcc-8004.179.1 0.75 +0.6
172,528 + Xcc-8004.179.1 0.75 +0.3
172,528 + Xcc-8004.179.1 0.75 -0.2
172,528 + Xcc-8004.179.1 0.75 -0.5
172,528 + Xcc-8004.179.1 0.75 -0.3
172,528 + Xcc-8004.179.1 0.75 -1.0
172,528 + Xcc-8004.179.1 0.75 +1.1
172,529 - Xcc-8004.179.1 0.75 -0.0
172,529 - Xcc-8004.179.1 0.75 -2.2
172,529 - Xcc-8004.179.1 0.75 +1.7
172,529 - Xcc-8004.179.1 0.75 +0.2
172,529 - Xcc-8004.179.1 0.75 +0.4
172,529 - Xcc-8004.179.1 0.75 +0.7
172,529 - Xcc-8004.179.1 0.75 -0.1
172,529 - Xcc-8004.179.1 0.75 -0.9
172,529 - Xcc-8004.179.1 0.75 -0.2
172,533 + Xcc-8004.179.1 0.76 -0.3
172,533 + Xcc-8004.179.1 0.76 +0.5
172,534 - Xcc-8004.179.1 0.76 +0.3
172,534 - Xcc-8004.179.1 0.76 -0.9
172,534 - Xcc-8004.179.1 0.76 -0.5
172,534 - Xcc-8004.179.1 0.76 +0.4
172,549 - Xcc-8004.179.1 0.77 +0.1
172,605 - Xcc-8004.179.1 0.81 -0.4
172,605 - Xcc-8004.179.1 0.81 +0.9
172,612 - Xcc-8004.179.1 0.82 +0.7
172,623 + Xcc-8004.179.1 0.83 -0.1
172,624 - Xcc-8004.179.1 0.83 -0.9
172,624 - Xcc-8004.179.1 0.83 -0.3

Or see this region's nucleotide sequence