Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1705.1

Experiment: MOKA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1703.1 and Xcc-8004.1704.1 are separated by 100 nucleotidesXcc-8004.1704.1 and Xcc-8004.1705.1 are separated by 210 nucleotidesXcc-8004.1705.1 and Xcc-8004.1706.1 are separated by 53 nucleotidesXcc-8004.1706.1 and Xcc-8004.1707.1 are separated by 20 nucleotides Xcc-8004.1703.1: Xcc-8004.1703.1 - ThiJ/PfpI family protein, at 1,636,446 to 1,636,988 Xcc-8004.1703.1 Xcc-8004.1704.1: Xcc-8004.1704.1 - FIG01209781: hypothetical protein, at 1,637,089 to 1,637,685 Xcc-8004.1704.1 Xcc-8004.1705.1: Xcc-8004.1705.1 - FIG01209877: hypothetical protein, at 1,637,896 to 1,638,435 Xcc-8004.1705.1 Xcc-8004.1706.1: Xcc-8004.1706.1 - FIG01212263: hypothetical protein, at 1,638,489 to 1,638,869 Xcc-8004.1706.1 Xcc-8004.1707.1: Xcc-8004.1707.1 - peptidase, M23/M37 family, at 1,638,890 to 1,639,480 Xcc-8004.1707.1 Position (kb) 1637 1638 1639Strain fitness (log2 ratio) -2 -1 0 1 2at 1636.903 kb on + strand, within Xcc-8004.1703.1at 1636.944 kb on - strandat 1636.944 kb on - strandat 1637.004 kb on - strandat 1637.004 kb on - strandat 1637.004 kb on - strandat 1637.004 kb on - strandat 1637.004 kb on - strandat 1637.005 kb on + strandat 1637.006 kb on - strandat 1637.006 kb on - strandat 1637.043 kb on + strandat 1637.091 kb on - strandat 1637.228 kb on + strand, within Xcc-8004.1704.1at 1637.250 kb on - strand, within Xcc-8004.1704.1at 1637.250 kb on - strand, within Xcc-8004.1704.1at 1637.250 kb on - strand, within Xcc-8004.1704.1at 1637.250 kb on - strand, within Xcc-8004.1704.1at 1637.348 kb on + strand, within Xcc-8004.1704.1at 1637.349 kb on - strand, within Xcc-8004.1704.1at 1637.372 kb on + strand, within Xcc-8004.1704.1at 1637.558 kb on + strand, within Xcc-8004.1704.1at 1637.558 kb on + strand, within Xcc-8004.1704.1at 1637.558 kb on + strand, within Xcc-8004.1704.1at 1637.671 kb on + strandat 1637.671 kb on + strandat 1637.671 kb on + strandat 1637.672 kb on - strandat 1637.717 kb on + strandat 1637.743 kb on - strandat 1637.769 kb on + strandat 1637.769 kb on + strandat 1637.770 kb on - strandat 1637.770 kb on - strandat 1637.770 kb on - strandat 1637.770 kb on - strandat 1637.866 kb on + strandat 1637.927 kb on + strandat 1637.970 kb on - strand, within Xcc-8004.1705.1at 1638.237 kb on - strand, within Xcc-8004.1705.1at 1638.387 kb on + strandat 1638.388 kb on - strandat 1638.388 kb on - strandat 1638.388 kb on - strandat 1638.460 kb on + strandat 1638.460 kb on + strandat 1638.461 kb on - strandat 1638.461 kb on - strandat 1638.461 kb on - strandat 1638.461 kb on - strandat 1638.465 kb on + strandat 1638.465 kb on + strandat 1638.466 kb on - strandat 1638.466 kb on - strandat 1638.466 kb on - strandat 1638.466 kb on - strandat 1638.466 kb on - strandat 1638.534 kb on + strand, within Xcc-8004.1706.1at 1638.534 kb on + strand, within Xcc-8004.1706.1at 1638.534 kb on + strand, within Xcc-8004.1706.1at 1638.534 kb on + strand, within Xcc-8004.1706.1at 1638.534 kb on + strand, within Xcc-8004.1706.1at 1638.535 kb on - strand, within Xcc-8004.1706.1at 1638.535 kb on - strand, within Xcc-8004.1706.1at 1638.535 kb on - strand, within Xcc-8004.1706.1at 1638.535 kb on - strand, within Xcc-8004.1706.1at 1638.773 kb on + strand, within Xcc-8004.1706.1at 1638.774 kb on - strand, within Xcc-8004.1706.1at 1638.832 kb on + strandat 1638.833 kb on - strandat 1638.939 kb on + strandat 1638.940 kb on - strandat 1638.940 kb on - strandat 1638.957 kb on + strand, within Xcc-8004.1707.1at 1638.957 kb on + strand, within Xcc-8004.1707.1at 1638.957 kb on + strand, within Xcc-8004.1707.1at 1638.957 kb on + strand, within Xcc-8004.1707.1at 1638.958 kb on - strand, within Xcc-8004.1707.1at 1638.958 kb on - strand, within Xcc-8004.1707.1at 1638.958 kb on - strand, within Xcc-8004.1707.1at 1638.958 kb on - strand, within Xcc-8004.1707.1at 1638.958 kb on - strand, within Xcc-8004.1707.1at 1638.958 kb on - strand, within Xcc-8004.1707.1at 1638.985 kb on + strand, within Xcc-8004.1707.1at 1639.086 kb on + strand, within Xcc-8004.1707.1at 1639.086 kb on + strand, within Xcc-8004.1707.1at 1639.087 kb on - strand, within Xcc-8004.1707.1at 1639.087 kb on - strand, within Xcc-8004.1707.1at 1639.087 kb on - strand, within Xcc-8004.1707.1at 1639.087 kb on - strand, within Xcc-8004.1707.1at 1639.087 kb on - strand, within Xcc-8004.1707.1at 1639.089 kb on + strand, within Xcc-8004.1707.1at 1639.089 kb on + strand, within Xcc-8004.1707.1at 1639.089 kb on + strand, within Xcc-8004.1707.1at 1639.090 kb on - strand, within Xcc-8004.1707.1at 1639.090 kb on - strand, within Xcc-8004.1707.1at 1639.090 kb on - strand, within Xcc-8004.1707.1at 1639.090 kb on - strand, within Xcc-8004.1707.1at 1639.090 kb on - strand, within Xcc-8004.1707.1at 1639.164 kb on - strand, within Xcc-8004.1707.1at 1639.164 kb on - strand, within Xcc-8004.1707.1

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Per-strain Table

Position Strand Gene LocusTag Fraction MOKA
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1,636,903 + Xcc-8004.1703.1 0.84 +0.5
1,636,944 - +0.2
1,636,944 - +0.3
1,637,004 - -0.3
1,637,004 - +0.7
1,637,004 - +1.2
1,637,004 - +0.7
1,637,004 - -0.0
1,637,005 + -0.7
1,637,006 - +0.6
1,637,006 - +0.5
1,637,043 + -0.8
1,637,091 - +0.9
1,637,228 + Xcc-8004.1704.1 0.23 -0.4
1,637,250 - Xcc-8004.1704.1 0.27 -1.4
1,637,250 - Xcc-8004.1704.1 0.27 +0.6
1,637,250 - Xcc-8004.1704.1 0.27 -0.0
1,637,250 - Xcc-8004.1704.1 0.27 +0.3
1,637,348 + Xcc-8004.1704.1 0.43 +0.4
1,637,349 - Xcc-8004.1704.1 0.44 -0.4
1,637,372 + Xcc-8004.1704.1 0.47 -1.8
1,637,558 + Xcc-8004.1704.1 0.79 +0.3
1,637,558 + Xcc-8004.1704.1 0.79 +0.2
1,637,558 + Xcc-8004.1704.1 0.79 +0.5
1,637,671 + -0.2
1,637,671 + -0.6
1,637,671 + +0.6
1,637,672 - +0.4
1,637,717 + -1.6
1,637,743 - +0.8
1,637,769 + -0.3
1,637,769 + +2.0
1,637,770 - +0.1
1,637,770 - +0.3
1,637,770 - -0.1
1,637,770 - -0.8
1,637,866 + -0.6
1,637,927 + +0.5
1,637,970 - Xcc-8004.1705.1 0.14 +0.8
1,638,237 - Xcc-8004.1705.1 0.63 +0.5
1,638,387 + -0.7
1,638,388 - -2.3
1,638,388 - +0.2
1,638,388 - +0.3
1,638,460 + -0.1
1,638,460 + +0.5
1,638,461 - +0.2
1,638,461 - +0.2
1,638,461 - -1.4
1,638,461 - -0.7
1,638,465 + -0.5
1,638,465 + +0.8
1,638,466 - +0.1
1,638,466 - +0.3
1,638,466 - +0.4
1,638,466 - -0.9
1,638,466 - -0.5
1,638,534 + Xcc-8004.1706.1 0.12 -0.2
1,638,534 + Xcc-8004.1706.1 0.12 -0.0
1,638,534 + Xcc-8004.1706.1 0.12 -0.4
1,638,534 + Xcc-8004.1706.1 0.12 -1.5
1,638,534 + Xcc-8004.1706.1 0.12 -0.3
1,638,535 - Xcc-8004.1706.1 0.12 +0.2
1,638,535 - Xcc-8004.1706.1 0.12 -0.5
1,638,535 - Xcc-8004.1706.1 0.12 -0.5
1,638,535 - Xcc-8004.1706.1 0.12 +0.9
1,638,773 + Xcc-8004.1706.1 0.75 +0.7
1,638,774 - Xcc-8004.1706.1 0.75 +0.4
1,638,832 + +0.5
1,638,833 - +0.4
1,638,939 + -0.1
1,638,940 - -0.7
1,638,940 - -0.1
1,638,957 + Xcc-8004.1707.1 0.11 -0.7
1,638,957 + Xcc-8004.1707.1 0.11 -0.3
1,638,957 + Xcc-8004.1707.1 0.11 -1.1
1,638,957 + Xcc-8004.1707.1 0.11 +1.1
1,638,958 - Xcc-8004.1707.1 0.12 +0.6
1,638,958 - Xcc-8004.1707.1 0.12 -0.9
1,638,958 - Xcc-8004.1707.1 0.12 +1.3
1,638,958 - Xcc-8004.1707.1 0.12 -0.4
1,638,958 - Xcc-8004.1707.1 0.12 +0.5
1,638,958 - Xcc-8004.1707.1 0.12 +0.6
1,638,985 + Xcc-8004.1707.1 0.16 -0.1
1,639,086 + Xcc-8004.1707.1 0.33 +2.0
1,639,086 + Xcc-8004.1707.1 0.33 -0.4
1,639,087 - Xcc-8004.1707.1 0.33 +0.3
1,639,087 - Xcc-8004.1707.1 0.33 +0.0
1,639,087 - Xcc-8004.1707.1 0.33 +0.0
1,639,087 - Xcc-8004.1707.1 0.33 +0.3
1,639,087 - Xcc-8004.1707.1 0.33 +0.6
1,639,089 + Xcc-8004.1707.1 0.34 -0.0
1,639,089 + Xcc-8004.1707.1 0.34 -0.7
1,639,089 + Xcc-8004.1707.1 0.34 +0.3
1,639,090 - Xcc-8004.1707.1 0.34 -1.2
1,639,090 - Xcc-8004.1707.1 0.34 -0.1
1,639,090 - Xcc-8004.1707.1 0.34 +0.4
1,639,090 - Xcc-8004.1707.1 0.34 -0.1
1,639,090 - Xcc-8004.1707.1 0.34 +1.0
1,639,164 - Xcc-8004.1707.1 0.46 +0.9
1,639,164 - Xcc-8004.1707.1 0.46 -0.5

Or see this region's nucleotide sequence